Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0003910

Physical Location & Seq

Genomic Coordinates Reverse (-)

20753440 .. 20754208

Gene Structure 769 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G241500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGCGAATGAGGATCTGGTTTCATGGAATGCAATACTATCAGGTTACTCTCAAGAGGGAAATCATGGGCTTGAGGCGATTTTTGTCTTTATTGAGATGGTGGGAGAAGGGATGGGGTTAGATCATGTCCCATTTACTAGTGCAGTTTCAGCTTGCGGCCATGAAATGAATTTAGAACTTGGCTTGACAATTAAATCAGGATATGGAAGTCATGTTTCAGTTTGTAATGTATTGATCTCGACATATTCAAAATGTGAGGTTACTGAAGATGCAAAATTAGTCTTGCAGTGCATGAATGATCGCAACACAGGCTTTTTATCAATGCATAATGTTTGCAACAGCTTGATCACCATGTATGCTAAGTTTGATTCCATTCATGACTCCATCAAAGTTTTTGAGGAGTTAAACTGCAGAGAAATCATATCGTGGAATGCTTTGATTTCAGGGTATGCTCGGAACGGGCTGTGTCAAGATGCACTAAAAACATTCTTGGAAGCAACTATGAAGTCGAAGCCAAACAATTGCACATTTGGTAGTGTCTTGAGTGCAATTGGTGATGCTCAGGATATTTCTCTGAAATATGGCCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000960 GO:0000962 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010468 GO:0010604 GO:0016070 GO:0016787 GO:0016788 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061013 GO:0061014 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1903311 GO:1903313 GO:1905637 GO:1905639

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

197

Amino Acids

21.41

Weight (kDa)

4.91

Isoelectric Point (pI)

36.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003910)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32430 AT4G32430
fragaria_vesca	FvH4_1g03430
malus_domestica	MD15G1174400.v1.1
prunus_persica	Prupe.5G003100_v2.0.a1 Prupe.7G240400_v2.0.a1 Prupe.7G241500_v2.0.a1 Prupe.7G241700_v2.0.a1 Prupe.8G249000_v2.0.a1
pyrus_communis	pycom15g15600
rosa_chinensis	RchiOBHm_Chr2g0088661 RchiOBHm_Chr5g0002171
rosa_laevigata	RLG00000015973 RLG00000015974 RLG00000031004
rosa_multiflora	Rmu_sc0006835.1_g000012 Rmu_sc0006835.1_g000013 Rmu_sc0013155.1_g000001 Rmu_sc0015442.1_g000012 Rmu_sc0015442.1_g000013 Rmu_sc0024326.1_g000001 Rmu_sc0041985.1_g000001
rosa_roxburghii	Rroxscaffold_2G00152420
rosa_rugosa	Rorug01G0485700
rosa_samantha	Rh2AG041200 Rh2BG039900 Rh2CG040700 Rh2DG040300 Rh5AG016800 Rh5AG016900 Rh5CG018300 Rh5CG018400 Rh5CG018500
rosa_wichuraiana	Rw2G003320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	156
AclWI	GGATC	1 cut(s)	21
AcoI	YGGCCR	2 cut(s)	157, 583
AcsI	RAATTY	1 cut(s)	169
AcuI	CTGAAG	1 cut(s)	285
AgsI	TTSAA	1 cut(s)	249
AhlI	ACTAGT	1 cut(s)	137
AluBI	AGCT	2 cut(s)	152, 342
AluI	AGCT	2 cut(s)	152, 342
AlwI	GGATC	1 cut(s)	21
AoxI	GGCC	2 cut(s)	157, 583
ApoI	RAATTY	1 cut(s)	169
AsuHPI	GGTGA	2 cut(s)	340, 566
BalI	TGGCCA	1 cut(s)	585
BccI	CCATC	3 cut(s)	91, 106, 392
BclI	TGATCA	1 cut(s)	345
BcuI	ACTAGT	1 cut(s)	137
BfaI	CTAG	1 cut(s)	138
BfmI	CTRYAG	1 cut(s)	409
BisI	GCNGC	1 cut(s)	157
BlsI	GCNGC	1 cut(s)	158
BmsI	GCATC	3 cut(s)	259, 463, 547
Bpu10I	CCTNAGC	1 cut(s)	561
BpuEI	CTTGAG	3 cut(s)	36, 92, 562
BseGI	GGATG	1 cut(s)	117
BseMII	CTCAG	1 cut(s)	575
BseRI	GAGGAG	1 cut(s)	413
BsgI	GTGCAG	1 cut(s)	162
BshFI	GGCC	2 cut(s)	159, 585
BslFI	GGGAC	1 cut(s)	113
BsmFI	GGGAC	1 cut(s)	113
BsmI	GAATGC	2 cut(s)	34, 436
BsnI	GGCC	2 cut(s)	159, 585
Bsp143I	GATC	5 cut(s)	13, 121, 234, 298, 345
BspACI	CCGC	1 cut(s)	156
BspANI	GGCC	2 cut(s)	159, 585
BspCNI	CTCAG	1 cut(s)	574
BspHI	TCATGA	1 cut(s)	376
BspMAI	CTGCAG	1 cut(s)	413
BspPI	GGATC	1 cut(s)	21
BssMI	GATC	5 cut(s)	13, 121, 234, 298, 345
BstC8I	GCNNGC	1 cut(s)	154
BstDEI	CTNAG	2 cut(s)	360, 561
BstF5I	GGATG	1 cut(s)	117
BstKTI	GATC	5 cut(s)	16, 124, 237, 301, 348
BstMBI	GATC	5 cut(s)	13, 121, 234, 298, 345
BstMWI	GCNNNNNNNGC	2 cut(s)	149, 309
BstSFI	CTRYAG	1 cut(s)	409
BstX2I	RGATCY	1 cut(s)	13
BstYI	RGATCY	1 cut(s)	13
BsuRI	GGCC	2 cut(s)	159, 585
BtsCI	GGATG	1 cut(s)	117
BtsI	GCAGTG	1 cut(s)	293
BtsIMutI	CAGTG	1 cut(s)	293
Cac8I	GCNNGC	1 cut(s)	154
CciI	TCATGA	1 cut(s)	376
CviAII	CATG	8 cut(s)	24, 65, 125, 161, 212, 292, 352, 377
CviJI	RGCY	9 cut(s)	70, 152, 159, 183, 312, 342, 463, 514, 585
CviKI_1	RGCY	9 cut(s)	70, 152, 159, 183, 312, 342, 463, 514, 585
DdeI	CTNAG	2 cut(s)	360, 561
DpnI	GATC	5 cut(s)	15, 123, 236, 300, 347
DpnII	GATC	5 cut(s)	13, 121, 234, 298, 345
EaeI	YGGCCR	2 cut(s)	157, 583
Eco57I	CTGAAG	1 cut(s)	285
EcoT22I	ATGCAT	1 cut(s)	327
FaeI	CATG	8 cut(s)	27, 68, 128, 164, 215, 295, 355, 380
FaqI	GGGAC	1 cut(s)	113
FatI	CATG	8 cut(s)	23, 64, 124, 160, 211, 291, 351, 376
FbaI	TGATCA	1 cut(s)	345
Fnu4HI	GCNGC	1 cut(s)	157
FokI	GGATG	1 cut(s)	124
Fsp4HI	GCNGC	1 cut(s)	157
FspBI	CTAG	1 cut(s)	138
GluI	GCNGC	1 cut(s)	157
HaeIII	GGCC	2 cut(s)	159, 585
Hin1II	CATG	8 cut(s)	27, 68, 128, 164, 215, 295, 355, 380
HinfI	GANTC	2 cut(s)	368, 380
HphI	GGTGA	2 cut(s)	340, 566
Hpy188I	TCNGA	2 cut(s)	456, 576
Hpy188III	TCNNGA	7 cut(s)	53, 198, 238, 377, 470, 541, 563
HpyAV	CCTTC	1 cut(s)	101
HpyF10VI	GCNNNNNNNGC	2 cut(s)	149, 309
HpyF3I	CTNAG	2 cut(s)	360, 561
Hsp92II	CATG	8 cut(s)	27, 68, 128, 164, 215, 295, 355, 380
Ksp22I	TGATCA	1 cut(s)	345
Kzo9I	GATC	5 cut(s)	13, 121, 234, 298, 345
LpnPI	CCDG	6 cut(s)	2, 27, 183, 294, 429, 548
LweI	GCATC	3 cut(s)	259, 463, 547
MaeI	CTAG	1 cut(s)	138
MaeIII	GTNAC	2 cut(s)	44, 259
MalI	GATC	5 cut(s)	15, 123, 236, 300, 347
MboI	GATC	5 cut(s)	13, 121, 234, 298, 345
MboII	GAAGA	1 cut(s)	278
MfeI	CAATTG	2 cut(s)	520, 549
MflI	RGATCY	1 cut(s)	13
MlsI	TGGCCA	1 cut(s)	585
MluCI	AATT	5 cut(s)	169, 189, 275, 520, 549
MluNI	TGGCCA	1 cut(s)	585
MlyI	GAGTC	1 cut(s)	374
MnlI	CCTC	5 cut(s)	4, 49, 67, 250, 391
Mox20I	TGGCCA	1 cut(s)	585
Mph1103I	ATGCAT	1 cut(s)	327
MscI	TGGCCA	1 cut(s)	585
MseI	TTAA	2 cut(s)	192, 404
Msp20I	TGGCCA	1 cut(s)	585
MunI	CAATTG	2 cut(s)	520, 549
Mva1269I	GAATGC	2 cut(s)	34, 436
MwoI	GCNNNNNNNGC	2 cut(s)	149, 309
NdeII	GATC	5 cut(s)	13, 121, 234, 298, 345
NlaIII	CATG	8 cut(s)	27, 68, 128, 164, 215, 295, 355, 380
NsiI	ATGCAT	1 cut(s)	327
PagI	TCATGA	1 cut(s)	376
PctI	GAATGC	2 cut(s)	34, 436
PfeI	GAWTC	1 cut(s)	368
PkrI	GCNGC	1 cut(s)	158
PleI	GAGTC	1 cut(s)	374
PpsI	GAGTC	1 cut(s)	374
PstI	CTGCAG	1 cut(s)	413
PsuI	RGATCY	1 cut(s)	13
SaqAI	TTAA	2 cut(s)	192, 404
SatI	GCNGC	1 cut(s)	157
Sau3AI	GATC	5 cut(s)	13, 121, 234, 298, 345
SchI	GAGTC	1 cut(s)	374
SetI	ASST	4 cut(s)	46, 154, 261, 344
SfaNI	GCATC	3 cut(s)	259, 463, 547
SfcI	CTRYAG	1 cut(s)	409
SmlI	CTYRAG	3 cut(s)	51, 71, 541
SmoI	CTYRAG	3 cut(s)	51, 71, 541
SpeI	ACTAGT	1 cut(s)	137
Sse9I	AATT	5 cut(s)	169, 189, 275, 520, 549
SsiI	CCGC	1 cut(s)	156
SspMI	CTAG	1 cut(s)	138
TaqI	TCGA	2 cut(s)	239, 509
TasI	AATT	5 cut(s)	169, 189, 275, 520, 549
TauI	GCSGC	1 cut(s)	159
TfiI	GAWTC	1 cut(s)	368
Tru1I	TTAA	2 cut(s)	192, 404
Tru9I	TTAA	2 cut(s)	192, 404
TscAI	CASTG	1 cut(s)	293
TspDTI	ATGAA	6 cut(s)	12, 177, 182, 308, 365, 518
TspRI	CASTG	1 cut(s)	293
XapI	RAATTY	1 cut(s)	169
XspI	CTAG	1 cut(s)	138
Zsp2I	ATGCAT	1 cut(s)	327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.