Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0009241

Physical Location & Seq

Genomic Coordinates Reverse (-)

5342625 .. 5347222

Gene Structure 4598 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G049000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1617 bp

ATGTCGATGCTCGATTCGTTCTTCAACAAGGGCTTCAAAGCGGCCAAATGCAAAACCCTGCTGAAATTGACTATTCCGCGGATAAAGTTGTTGAGGAACAGGAGAGAAATTCAGATTAAACAGATGCGCCGTGACATTGCCAAGCTTCTTGAGACTGGCCAAGAGGCTACTGCTAGGATTCGGGTAGAGCATATTATTAGAGAAGAGAATATGATGGCAGCTCACGAGATTCTTGAGCTATTTTGTGAGCTTATTGCTGTCCGCCTTCCAATTATTGAATCACAAAGGGAATGTCCTCTAGACTTAAAAGAAGCAATATCCAGTGTGTGTTTTGCTGCGCCAAGATGTGCTGATCTGTCAGAGTTGCTACAAGTTCAAATGCTATTTGCTTCAAAATATGGGAAAGAATTTGTATCAGCTGCAACAGAACTCATTCCAGATTGTGGTGTCAATCGCCAGTTGATAGAACTGCTATCTGTTCGTGCTCCTTCGCCTGAGAAAAAACTGAAGCTACTGAAAGAAATTGCCGAAGAGCATGAGCTGGATTGGGATCCTGCTGCATCTGAAGCTGAAATTTTCAAACCACATGAAGATTTATTGAATGGTCCAACACAGTTTGTCAGTGGGTCTAAACTGCCCCTCCCCAAAGAAAAACATGACGAACCATCGTACTGCGCCCCAGATCAATCTCAGAAAGAACAGTCTGATTCTGATGATGGTTTGGAATCATTAGACTTTCCTGAAGTGCCTACGGTATCACTACGACCAATTGCGAATCCAGCCTCAGCACCTGCGATGCCTCCACCTTTACCAACTCCGCCACACCCTGAAGTTGATCATGGATTGTCAAAAGATTCTGGGGCCATTGAAAATTCGTCCGAAGAGCCATCCTTTGAGTCTGAAGAAGTGATGCAAGCAAGATCAGTGGCTAACAAACACGAACAGTCTCATGTTTCAGTTGATGGTATGGAAGATAAACAGTTCTTGCCATTTATTTCTCCCCCATCACTTTCGTCTGCATCATTTTCTACAAGACGAAGCAATCCACCACCTTCTCTTTCAAGAACAAGAAGTGACGCCAATGTGGATTTTCAGGATGTGTTAGCTGCTGCTCAGGCTGCTGCAGACTCTGCAGAACGTGCAGCAGCAGCAGCACGCTCAGCAGCTAGTCTTGCACAAGTTAGAATTAACGAGCTTACCAAGAAAAACACTGAAGAAGTCCCTGAAAATAGCTGTGAAAACCCATTTCATGTAGACATTCCTAGTGAGTCAGATACTAGAGAAAAACCAGATTTTGATCATCCTATCCGCAATGGTGATTCCGATGGTGCTATACATTCTCCGGGACCGCATCAAGTCAATGAATATGGCCATGGAGCTAAGGTATCAGATCTTAATTCTGTCACTATGGAGCCACTTAATGCAGATTTGGATTCCTCACTTCCCAATGATCATGCTTTTGAACATGAGCCTCTTCGACATCAGCCTCAGAGATTGAGTTCAATGGAAGATGATCCGTACTTCTCATACCCAAACTTATTTACATCACAAAACTCAAATGTCGGATCCGGTGCTCAGTCTTCTACAGATGACTCTTTTCCTTCGCATGGACGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Ist1

Protein Analysis

539

Amino Acids

59.34

Weight (kDa)

4.97

Isoelectric Point (pI)

55.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009241)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34220 AT1G34220
fragaria_vesca	FvH4_2g12480 FvH4_2g12480
malus_domestica	MD00G1078400.v1.1 MD10G1043300.v1.1
prunus_persica	Prupe.8G049000_v2.0.a1
pyrus_communis	pycom05g03090 pycom10g03030
rosa_chinensis	RchiOBHm_Chr6g0272921
rosa_laevigata	RLG00000013655
rosa_multiflora	Rmu_sc0008713.1_g000021
rosa_roxburghii	Rroxscaffold_7G00195920
rosa_rugosa	Rorug06G0071200 Rorug06G0071300 Rorug06G0071400.1 Rorug06G0071500
rosa_samantha	Rh6AG187100 Rh6BG190500 Rh6CG189800 Rh6DG181200
rosa_wichuraiana	Rw6G016210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	799
Acc36I	ACCTGC	1 cut(s)	799
AccB7I	CCANNNNNTGG	1 cut(s)	443
AccI	GTMKAC	1 cut(s)	1254
AccII	CGCG	1 cut(s)	79
AciI	CCGC	7 cut(s)	41, 77, 79, 262, 818, 1309, 1349
AclWI	GGATC	5 cut(s)	545, 558, 1508, 1560, 1573
AcoI	YGGCCR	3 cut(s)	42, 157, 1369
AcsI	RAATTY	4 cut(s)	108, 407, 573, 871
AcuI	CTGAAG	6 cut(s)	527, 585, 762, 849, 921, 1233
AcyI	GRCGYC	1 cut(s)	1077
AfaI	GTAC	2 cut(s)	671, 1520
AfiI	CCNNNNNNNGG	2 cut(s)	443, 1607
Alw21I	GWGCWC	2 cut(s)	487, 1576
Alw26I	GTCTC	2 cut(s)	146, 951
AlwI	GGATC	5 cut(s)	545, 558, 1508, 1560, 1573
AlwNI	CAGNNNCTG	2 cut(s)	791, 1130
AoxI	GGCC	4 cut(s)	42, 157, 861, 1369
ApoI	RAATTY	4 cut(s)	108, 407, 573, 871
ArsI	GACNNNNNNTTYG	2 cut(s)	277, 309
Asp700I	GAANNNNTTC	1 cut(s)	432
AspLEI	GCGC	3 cut(s)	129, 340, 677
AspS9I	GGNCC	3 cut(s)	605, 861, 1346
AsuC2I	CCSGG	1 cut(s)	1344
AsuHPI	GGTGA	1 cut(s)	1328
AvaII	GGWCC	2 cut(s)	605, 1346
BalI	TGGCCA	2 cut(s)	159, 1371
BamHI	GGATCC	2 cut(s)	550, 1565
BauI	CACGAG	1 cut(s)	224
BbsI	GAAGAC	1 cut(s)	1572
Bbv12I	GWGCWC	2 cut(s)	487, 1576
BbvCI	CCTCAGC	1 cut(s)	784
BccI	CCATC	7 cut(s)	208, 673, 710, 895, 956, 1012, 1319
BceAI	ACGGC	1 cut(s)	114
BclI	TGATCA	3 cut(s)	835, 1297, 1450
BcnI	CCSGG	1 cut(s)	1344
BcoDI	GTCTC	2 cut(s)	146, 951
BfaI	CTAG	5 cut(s)	174, 299, 1167, 1263, 1278
BfmI	CTRYAG	3 cut(s)	1122, 1131, 1584
BfuAI	ACCTGC	1 cut(s)	799
BglII	AGATCT	1 cut(s)	1390
BlpI	GCTNAGC	1 cut(s)	1159
Bme1390I	CCNGG	1 cut(s)	1344
Bme18I	GGWCC	2 cut(s)	605, 1346
BmgT120I	GGNCC	3 cut(s)	605, 861, 1346
BmiI	GGNNCC	5 cut(s)	552, 862, 1347, 1413, 1567
BmrFI	CCNGG	1 cut(s)	1344
BmsI	GCATC	6 cut(s)	114, 569, 786, 900, 1028, 1360
BpiI	GAAGAC	1 cut(s)	1572
Bpu10I	CCTNAGC	3 cut(s)	784, 1113, 1380
Bpu1102I	GCTNAGC	1 cut(s)	1159
BpuEI	CTTGAG	2 cut(s)	170, 254
BpuMI	CCSGG	1 cut(s)	1344
BsaBI	GATNNNNATC	2 cut(s)	549, 1296
BsaHI	GRCGYC	1 cut(s)	1077
BsaJI	CCNNGG	2 cut(s)	77, 1372
BsaWI	WCCGGW	1 cut(s)	1568
BsaXI	ACNNNNNCTCC	4 cut(s)	624, 654, 1368, 1398
Bsc4I	CCNNNNNNNGG	2 cut(s)	443, 1607
Bse1I	ACTGG	3 cut(s)	160, 321, 457
Bse3DI	GCAATG	2 cut(s)	135, 1318
Bse8I	GATNNNNATC	2 cut(s)	549, 1296
BseDI	CCNNGG	2 cut(s)	77, 1372
BseGI	GGATG	3 cut(s)	887, 1102, 1300
BseJI	GATNNNNATC	2 cut(s)	549, 1296
BseLI	CCNNNNNNNGG	2 cut(s)	443, 1607
BseMI	GCAATG	2 cut(s)	135, 1318
BseMII	CTCAG	7 cut(s)	486, 704, 798, 1127, 1173, 1502, 1589
BseNI	ACTGG	3 cut(s)	160, 321, 457
BsgI	GTGCAG	1 cut(s)	1161
Bsh1236I	CGCG	1 cut(s)	79
BshFI	GGCC	4 cut(s)	44, 159, 863, 1371
BsiHKAI	GWGCWC	2 cut(s)	487, 1576
BsiSI	CCGG	2 cut(s)	1343, 1569
BslFI	GGGAC	2 cut(s)	1205, 1359
BslI	CCNNNNNNNGG	2 cut(s)	443, 1607
BsmAI	GTCTC	2 cut(s)	146, 951
BsmFI	GGGAC	2 cut(s)	1205, 1359
BsnI	GGCC	4 cut(s)	44, 159, 863, 1371
Bsp1286I	GDGCHC	2 cut(s)	487, 1576
Bsp1720I	GCTNAGC	1 cut(s)	1159
Bsp19I	CCATGG	1 cut(s)	1372
BspACI	CCGC	7 cut(s)	41, 77, 79, 262, 818, 1309, 1349
BspANI	GGCC	4 cut(s)	44, 159, 863, 1371
BspCNI	CTCAG	7 cut(s)	487, 703, 797, 1126, 1172, 1501, 1588
BspFNI	CGCG	1 cut(s)	79
BspLI	GGNNCC	5 cut(s)	552, 862, 1347, 1413, 1567
BspMAI	CTGCAG	2 cut(s)	1126, 1135
BspMI	ACCTGC	1 cut(s)	799
BspPI	GGATC	5 cut(s)	545, 558, 1508, 1560, 1573
BspQI	GCTCTTC	2 cut(s)	525, 876
BsrDI	GCAATG	2 cut(s)	135, 1318
BsrI	ACTGG	3 cut(s)	160, 321, 457
BssECI	CCNNGG	2 cut(s)	77, 1372
BssNI	GRCGYC	1 cut(s)	1077
BssSI	CACGAG	1 cut(s)	224
BssT1I	CCWWGG	1 cut(s)	1372
Bst2BI	CACGAG	1 cut(s)	224
Bst4CI	ACNGT	5 cut(s)	615, 702, 754, 945, 981
Bst6I	CTCTTC	4 cut(s)	198, 525, 876, 1479
BstACI	GRCGYC	1 cut(s)	1077
BstAPI	GCANNNNNTGC	2 cut(s)	1130, 1139
BstC8I	GCNNGC	2 cut(s)	915, 1156
BstDEI	CTNAG	8 cut(s)	495, 690, 784, 1113, 1159, 1380, 1488, 1575
BstDSI	CCRYGG	2 cut(s)	77, 1372
BstF5I	GGATG	3 cut(s)	887, 1102, 1300
BstFNI	CGCG	1 cut(s)	79
BstHHI	GCGC	3 cut(s)	129, 340, 677
BstMAI	GTCTC	2 cut(s)	146, 951
BstSCI	CCNGG	1 cut(s)	1342
BstSFI	CTRYAG	3 cut(s)	1122, 1131, 1584
BstUI	CGCG	1 cut(s)	79
BstV2I	GAAGAC	1 cut(s)	1572
BstX2I	RGATCY	3 cut(s)	550, 1390, 1565
BstYI	RGATCY	3 cut(s)	550, 1390, 1565
BsuRI	GGCC	4 cut(s)	44, 159, 863, 1371
BtgI	CCRYGG	2 cut(s)	77, 1372
BtgZI	GCGATG	1 cut(s)	809
BtsCI	GGATG	3 cut(s)	887, 1102, 1300
BtsIMutI	CAGTG	4 cut(s)	328, 628, 930, 1209
BveI	ACCTGC	1 cut(s)	799
Cac8I	GCNNGC	2 cut(s)	915, 1156
CaiI	CAGNNNCTG	2 cut(s)	791, 1130
CfoI	GCGC	3 cut(s)	129, 340, 677
Cfr13I	GGNCC	3 cut(s)	605, 861, 1346
Cfr42I	CCGCGG	1 cut(s)	80
CseI	GACGC	1 cut(s)	1085
Csp6I	GTAC	2 cut(s)	670, 1519
CspCI	CAANNNNNGTGG	2 cut(s)	906, 941
CviQI	GTAC	2 cut(s)	670, 1519
DdeI	CTNAG	8 cut(s)	495, 690, 784, 1113, 1159, 1380, 1488, 1575
EaeI	YGGCCR	3 cut(s)	42, 157, 1369
Eam1104I	CTCTTC	4 cut(s)	198, 525, 876, 1479
EarI	CTCTTC	4 cut(s)	198, 525, 876, 1479
EciI	GGCGGA	2 cut(s)	251, 807
Eco130I	CCWWGG	1 cut(s)	1372
Eco47I	GGWCC	2 cut(s)	605, 1346
Eco57I	CTGAAG	6 cut(s)	527, 585, 762, 849, 921, 1233
EcoT14I	CCWWGG	1 cut(s)	1372
ErhI	CCWWGG	1 cut(s)	1372
FaqI	GGGAC	2 cut(s)	1205, 1359
FbaI	TGATCA	3 cut(s)	835, 1297, 1450
FblI	GTMKAC	1 cut(s)	1254
FokI	GGATG	3 cut(s)	874, 1109, 1287
FspBI	CTAG	5 cut(s)	174, 299, 1167, 1263, 1278
GlaI	GCGC	3 cut(s)	128, 339, 676
HaeIII	GGCC	4 cut(s)	44, 159, 863, 1371
HapII	CCGG	2 cut(s)	1343, 1569
HgaI	GACGC	1 cut(s)	1085
HhaI	GCGC	3 cut(s)	129, 340, 677
Hin1I	GRCGYC	1 cut(s)	1077
Hin6I	GCGC	3 cut(s)	127, 338, 675
HinP1I	GCGC	3 cut(s)	127, 338, 675
HindIII	AAGCTT	1 cut(s)	143
HpaII	CCGG	2 cut(s)	1343, 1569
HphI	GGTGA	1 cut(s)	1328
Hpy166II	GTNNAC	1 cut(s)	1255
Hpy188III	TCNNGA	8 cut(s)	149, 224, 233, 299, 437, 740, 1062, 1094
Hpy8I	GTNNAC	1 cut(s)	1255
HpyAV	CCTTC	4 cut(s)	275, 498, 1062, 1611
HpyCH4III	ACNGT	5 cut(s)	615, 702, 754, 945, 981
HpyCH4IV	ACGT	1 cut(s)	1138
HpyF3I	CTNAG	8 cut(s)	495, 690, 784, 1113, 1159, 1380, 1488, 1575
HpySE526I	ACGT	1 cut(s)	1138
Hsp92I	GRCGYC	1 cut(s)	1077
HspAI	GCGC	3 cut(s)	127, 338, 675
Ksp22I	TGATCA	3 cut(s)	835, 1297, 1450
KspI	CCGCGG	1 cut(s)	80
LguI	GCTCTTC	2 cut(s)	525, 876
LmnI	GCTCC	3 cut(s)	490, 1376, 1411
LweI	GCATC	6 cut(s)	114, 569, 786, 900, 1028, 1360
MaeI	CTAG	5 cut(s)	174, 299, 1167, 1263, 1278
MaeII	ACGT	1 cut(s)	1138
MaeIII	GTNAC	3 cut(s)	131, 1073, 1402
MfeI	CAATTG	1 cut(s)	768
MflI	RGATCY	3 cut(s)	550, 1390, 1565
MhlI	GDGCHC	2 cut(s)	487, 1576
MlsI	TGGCCA	2 cut(s)	159, 1371
MluNI	TGGCCA	2 cut(s)	159, 1371
MlyI	GAGTC	4 cut(s)	905, 1121, 1277, 1586
MmeI	TCCRAC	2 cut(s)	632, 1543
MnlI	CCTC	9 cut(s)	87, 157, 306, 650, 793, 810, 1447, 1482, 1497
Mox20I	TGGCCA	2 cut(s)	159, 1371
MroXI	GAANNNNTTC	1 cut(s)	432
MscI	TGGCCA	2 cut(s)	159, 1371
MseI	TTAA	5 cut(s)	117, 305, 1188, 1395, 1419
Msp20I	TGGCCA	2 cut(s)	159, 1371
MspA1I	CMGCKG	2 cut(s)	79, 419
MspI	CCGG	2 cut(s)	1343, 1569
MspR9I	CCNGG	1 cut(s)	1344
MunI	CAATTG	1 cut(s)	768
MvnI	CGCG	1 cut(s)	79
NciI	CCSGG	1 cut(s)	1344
NcoI	CCATGG	1 cut(s)	1372
NlaIV	GGNNCC	5 cut(s)	552, 862, 1347, 1413, 1567
NmuCI	GTSAC	3 cut(s)	131, 1073, 1402
PaqCI	CACCTGC	1 cut(s)	799
PciSI	GCTCTTC	2 cut(s)	525, 876
PdmI	GAANNNNTTC	1 cut(s)	432
PflMI	CCANNNNNTGG	1 cut(s)	443
PfoI	TCCNGGA	1 cut(s)	1342
PleI	GAGTC	4 cut(s)	904, 1121, 1276, 1586
PpsI	GAGTC	4 cut(s)	904, 1121, 1276, 1586
PspN4I	GGNNCC	5 cut(s)	552, 862, 1347, 1413, 1567
PspPI	GGNCC	3 cut(s)	605, 861, 1346
PstI	CTGCAG	2 cut(s)	1126, 1135
PstNI	CAGNNNCTG	2 cut(s)	791, 1130
PsuI	RGATCY	3 cut(s)	550, 1390, 1565
PvuII	CAGCTG	1 cut(s)	419
RsaI	GTAC	2 cut(s)	671, 1520
RsaNI	GTAC	2 cut(s)	670, 1519
SacII	CCGCGG	1 cut(s)	80
SapI	GCTCTTC	2 cut(s)	525, 876
SaqAI	TTAA	5 cut(s)	117, 305, 1188, 1395, 1419
Sau96I	GGNCC	3 cut(s)	605, 861, 1346
SchI	GAGTC	4 cut(s)	905, 1121, 1277, 1586
ScrFI	CCNGG	1 cut(s)	1344
SduI	GDGCHC	2 cut(s)	487, 1576
SfaNI	GCATC	6 cut(s)	114, 569, 786, 900, 1028, 1360
SfcI	CTRYAG	3 cut(s)	1122, 1131, 1584
Sfr303I	CCGCGG	1 cut(s)	80
SgrBI	CCGCGG	1 cut(s)	80
SinI	GGWCC	2 cut(s)	605, 1346
SmlI	CTYRAG	2 cut(s)	149, 233
SmoI	CTYRAG	2 cut(s)	149, 233
SsiI	CCGC	7 cut(s)	41, 77, 79, 262, 818, 1309, 1349
SspMI	CTAG	5 cut(s)	174, 299, 1167, 1263, 1278
StyD4I	CCNGG	1 cut(s)	1342
StyI	CCWWGG	1 cut(s)	1372
TaaI	ACNGT	5 cut(s)	615, 702, 754, 945, 981
TaiI	ACGT	1 cut(s)	1141
TaqI	TCGA	3 cut(s)	5, 12, 1477
TauI	GCSGC	1 cut(s)	44
Tru1I	TTAA	5 cut(s)	117, 305, 1188, 1395, 1419
Tru9I	TTAA	5 cut(s)	117, 305, 1188, 1395, 1419
TscAI	CASTG	4 cut(s)	328, 628, 930, 1216
TseFI	GTSAC	3 cut(s)	131, 1073, 1402
Tsp45I	GTSAC	3 cut(s)	131, 1073, 1402
TspDTI	ATGAA	3 cut(s)	603, 1238, 1377
TspGWI	ACGGA	1 cut(s)	1506
TspRI	CASTG	4 cut(s)	328, 628, 930, 1216
Van91I	CCANNNNNTGG	1 cut(s)	443
VpaK11BI	GGWCC	2 cut(s)	605, 1346
XapI	RAATTY	4 cut(s)	108, 407, 573, 871
XbaI	TCTAGA	1 cut(s)	298
XmiI	GTMKAC	1 cut(s)	1254
XmnI	GAANNNNTTC	1 cut(s)	432
XspI	CTAG	5 cut(s)	174, 299, 1167, 1263, 1278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.