Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0009241

Physical Location & Seq

Genomic Coordinates Forward (+)

9471077 .. 9472842

Gene Structure 1766 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0071200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGTACAGACCGGTGATGCTCATGGCCTCAGATTACCAGAGCACAACCCAAGATTCTACCCGTTTTGGGTGCGAAGAATCCAAAAAACCCGAACCCACCACCAAAACCAGTACTAGCAGCAAAGGAAAATCAAAGAAGTCAGCTAAACCTAAAAGGCCAAAGCCCCAGAGAGGTGTTGGTGTGGCTCAGCTGGAGCGCCTCCGTCTCCAACAGAGAGGTGTGGGTGTGACCAAATTAACCCAAATGCCCCTCCCCCATATCCTACCCCAACCTCAACCTCAGACCCAAGTTGTCCAAAATGTTGGTTTTCCAGATCACCAGCAGCGCCAGTTTCAATACTACCCAAACCCAGAAACCCGCGCCGACCCGCTTCTCAGCATTCCGGTACTCTACGGTGCGTCCAACTACGATGGAGCCATGAGTACTGGCTCTGGTTTGGTGGGCTTGGACCGGACCGGTTTGTTGGTTCAGACAGTTAATGGGAATGCTGGTTCAGCTGGGTTTGGTTATGGGTACAATGTTCGTCTTCATAATGATGTTGGTGGGTTGGTTATGGATCCGAACCAGTACGGTGTCGTTGGGGTTGGGGCTCCTAATCGTGGGGATGTGTATGAGGTCTCGAACGAACTCTCTTCAATACCAAAGATGAAGCAGCAACCCTCCTCTTCTTCTTCATCTGAATATTGCTGCTGTTGCAAGCAGAAGAAGAGATTCAATTGTGGAAACAACATGGGTTTTGGGGAATCTCCGGCTGTCTTTCCTATGGTCAACAGTTCCGATCTTCCCGGATTCGACCCACAAAACATCCCAAATGTCCGGCTAGCTGGTGAAACCGGCGGTGGTTTCAATGGTGGTACTTACTTGGGCCGCCGCTCCAGTCTTGTTGATGAGAGTGTGGAGGTTAGGGCAGTTCACAGGAAGGGGAGACAAGCAGGTGGTGATATTATGAAGGAGTATGAATTCTTTCCTGATCACAACAACAACAATTCTTCTTCAGTAGTCTCATCAGGCACATATCCCATGGAGCATGACATAGTTGCTTCATCAACTAATTCTTCTTCAGTTGGTAGATCATCAGAAGCTTCTGATCAACATCTTGGTGCTGCTTGTATTGAGGGGGCTGACATGATGATGATGATGATGAGCAGTGGCTATAGTCCTGTTGATTTGTCACTCAAACTGTCTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Ist1

Protein Analysis

396

Amino Acids

42.71

Weight (kDa)

8.56

Isoelectric Point (pI)

47.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009241)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34220 AT1G34220
fragaria_vesca	FvH4_2g12480 FvH4_2g12480
malus_domestica	MD00G1078400.v1.1 MD10G1043300.v1.1
prunus_persica	Prupe.8G049000_v2.0.a1
pyrus_communis	pycom05g03090 pycom10g03030
rosa_chinensis	RchiOBHm_Chr6g0272921
rosa_laevigata	RLG00000013655
rosa_multiflora	Rmu_sc0008713.1_g000021
rosa_roxburghii	Rroxscaffold_7G00195920
rosa_rugosa	Rorug06G0071200 Rorug06G0071300 Rorug06G0071400.1 Rorug06G0071500
rosa_samantha	Rh6AG187100 Rh6BG190500 Rh6CG189800 Rh6DG181200
rosa_wichuraiana	Rw6G016210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	923
Acc36I	ACCTGC	1 cut(s)	923
AccBSI	CCGCTC	1 cut(s)	873
AccII	CGCG	1 cut(s)	360
AciI	CCGC	5 cut(s)	358, 368, 837, 868, 871
AclWI	GGATC	2 cut(s)	551, 564
AcsI	RAATTY	1 cut(s)	959
AcuI	CTGAAG	2 cut(s)	978, 1044
AfaI	GTAC	7 cut(s)	5, 112, 387, 424, 515, 569, 856
AfiI	CCNNNNNNNGG	3 cut(s)	66, 170, 599
AgeI	ACCGGT	2 cut(s)	10, 455
AgsI	TTSAA	4 cut(s)	335, 636, 715, 847
AloI	GAACNNNNNNTCC	2 cut(s)	475, 507
AluBI	AGCT	5 cut(s)	143, 190, 497, 824, 1082
AluI	AGCT	5 cut(s)	143, 190, 497, 824, 1082
Alw21I	GWGCWC	1 cut(s)	44
Alw26I	GTCTC	4 cut(s)	209, 622, 919, 1006
AlwI	GGATC	2 cut(s)	551, 564
AoxI	GGCC	3 cut(s)	24, 155, 865
ApeKI	GCWGC	5 cut(s)	117, 322, 652, 687, 1103
ApoI	RAATTY	1 cut(s)	959
AsiGI	ACCGGT	2 cut(s)	10, 455
Asp700I	GAANNNNTTC	2 cut(s)	710, 963
AspLEI	GCGC	3 cut(s)	198, 327, 362
AspS9I	GGNCC	3 cut(s)	448, 453, 865
AsuC2I	CCSGG	1 cut(s)	786
AsuHPI	GGTGA	4 cut(s)	25, 308, 839, 950
AsuNHI	GCTAGC	1 cut(s)	820
AvaII	GGWCC	2 cut(s)	448, 453
BamHI	GGATCC	1 cut(s)	556
BanII	GRGCYC	1 cut(s)	592
BbsI	GAAGAC	1 cut(s)	518
Bbv12I	GWGCWC	1 cut(s)	44
BbvI	GCAGC	5 cut(s)	129, 334, 664, 674, 1090
BccI	CCATC	1 cut(s)	404
BclI	TGATCA	2 cut(s)	970, 1087
BcnI	CCSGG	1 cut(s)	786
BcoDI	GTCTC	4 cut(s)	209, 622, 919, 1006
BfaI	CTAG	3 cut(s)	114, 821, 1189
BfmI	CTRYAG	1 cut(s)	1153
BfoI	RGCGCY	2 cut(s)	199, 328
BfuAI	ACCTGC	1 cut(s)	923
BisI	GCNGC	7 cut(s)	118, 323, 653, 688, 868, 871, 1104
BlpI	GCTNAGC	1 cut(s)	186
BlsI	GCNGC	7 cut(s)	119, 324, 654, 689, 869, 872, 1105
BmcAI	AGTACT	2 cut(s)	112, 424
Bme1390I	CCNGG	1 cut(s)	786
Bme18I	GGWCC	2 cut(s)	448, 453
BmgT120I	GGNCC	3 cut(s)	448, 453, 865
BmiI	GGNNCC	3 cut(s)	415, 558, 591
BmrFI	CCNGG	1 cut(s)	786
BmsI	GCATC	1 cut(s)	6
BmtI	GCTAGC	1 cut(s)	824
BpiI	GAAGAC	1 cut(s)	518
BpmI	CTGGAG	2 cut(s)	212, 859
Bpu1102I	GCTNAGC	1 cut(s)	186
BpuMI	CCSGG	1 cut(s)	786
BsaBI	GATNNNNATC	1 cut(s)	1092
BsaI	GGTCTC	1 cut(s)	622
BsaJI	CCNNGG	1 cut(s)	1020
BsaWI	WCCGGW	4 cut(s)	10, 382, 450, 455
Bsc4I	CCNNNNNNNGG	3 cut(s)	66, 170, 599
Bse118I	RCCGGY	3 cut(s)	10, 455, 833
Bse1I	ACTGG	5 cut(s)	108, 328, 430, 565, 876
Bse8I	GATNNNNATC	1 cut(s)	1092
BseDI	CCNNGG	1 cut(s)	1020
BseGI	GGATG	2 cut(s)	610, 804
BseJI	GATNNNNATC	1 cut(s)	1092
BseLI	CCNNNNNNNGG	3 cut(s)	66, 170, 599
BseMII	CTCAG	4 cut(s)	42, 200, 293, 388
BseNI	ACTGG	5 cut(s)	108, 328, 430, 565, 876
BseRI	GAGGAG	1 cut(s)	652
BseXI	GCAGC	5 cut(s)	129, 334, 664, 674, 1090
BseYI	CCCAGC	1 cut(s)	497
Bsh1236I	CGCG	1 cut(s)	360
BshFI	GGCC	3 cut(s)	26, 157, 867
BshTI	ACCGGT	2 cut(s)	10, 455
BsiHKAI	GWGCWC	1 cut(s)	44
BsiSI	CCGG	8 cut(s)	11, 383, 451, 456, 749, 786, 817, 834
BslI	CCNNNNNNNGG	3 cut(s)	66, 170, 599
BsmAI	GTCTC	4 cut(s)	209, 622, 919, 1006
BsmBI	CGTCTC	1 cut(s)	209
BsmI	GAATGC	2 cut(s)	378, 490
BsnI	GGCC	3 cut(s)	26, 157, 867
Bso31I	GGTCTC	1 cut(s)	622
Bsp1286I	GDGCHC	2 cut(s)	44, 592
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	6 cut(s)	313, 556, 778, 970, 1070, 1087
Bsp1720I	GCTNAGC	1 cut(s)	186
Bsp19I	CCATGG	1 cut(s)	1020
BspACI	CCGC	5 cut(s)	358, 368, 837, 868, 871
BspANI	GGCC	3 cut(s)	26, 157, 867
BspCNI	CTCAG	4 cut(s)	41, 199, 292, 387
BspFNI	CGCG	1 cut(s)	360
BspLI	GGNNCC	3 cut(s)	415, 558, 591
BspMI	ACCTGC	1 cut(s)	923
BspOI	GCTAGC	1 cut(s)	824
BspPI	GGATC	2 cut(s)	551, 564
BspTNI	GGTCTC	1 cut(s)	622
BsrBI	CCGCTC	1 cut(s)	873
BsrFI	RCCGGY	3 cut(s)	10, 455, 833
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	5 cut(s)	108, 328, 430, 565, 876
BssAI	RCCGGY	3 cut(s)	10, 455, 833
BssECI	CCNNGG	1 cut(s)	1020
BssMI	GATC	6 cut(s)	313, 556, 778, 970, 1070, 1087
BssT1I	CCWWGG	1 cut(s)	1020
Bst4CI	ACNGT	5 cut(s)	395, 475, 572, 773, 1182
Bst6I	CTCTTC	3 cut(s)	637, 670, 701
BstAUI	TGTACA	1 cut(s)	3
BstC8I	GCNNGC	2 cut(s)	698, 822
BstDEI	CTNAG	4 cut(s)	28, 186, 279, 374
BstDSI	CCRYGG	1 cut(s)	1020
BstF5I	GGATG	2 cut(s)	610, 804
BstFNI	CGCG	1 cut(s)	360
BstH2I	RGCGCY	2 cut(s)	199, 328
BstHHI	GCGC	3 cut(s)	198, 327, 362
BstKTI	GATC	6 cut(s)	316, 559, 781, 973, 1073, 1090
BstMAI	GTCTC	4 cut(s)	209, 622, 919, 1006
BstMBI	GATC	6 cut(s)	313, 556, 778, 970, 1070, 1087
BstMWI	GCNNNNNNNGC	2 cut(s)	494, 693
BstSCI	CCNGG	1 cut(s)	784
BstSFI	CTRYAG	1 cut(s)	1153
BstUI	CGCG	1 cut(s)	360
BstV1I	GCAGC	5 cut(s)	129, 334, 664, 674, 1090
BstV2I	GAAGAC	1 cut(s)	518
BstX2I	RGATCY	1 cut(s)	556
BstXI	CCANNNNNNTGG	1 cut(s)	302
BstYI	RGATCY	1 cut(s)	556
BsuRI	GGCC	3 cut(s)	26, 157, 867
BtgI	CCRYGG	1 cut(s)	1020
BtsCI	GGATG	2 cut(s)	610, 804
BtsI	GCAGTG	1 cut(s)	1153
BtsIMutI	CAGTG	1 cut(s)	1153
BveI	ACCTGC	1 cut(s)	923
Cac8I	GCNNGC	2 cut(s)	698, 822
CfoI	GCGC	3 cut(s)	198, 327, 362
Cfr10I	RCCGGY	3 cut(s)	10, 455, 833
Cfr13I	GGNCC	3 cut(s)	448, 453, 865
CpoI	CGGWCCG	1 cut(s)	453
CseI	GACGC	1 cut(s)	387
Csp6I	GTAC	7 cut(s)	4, 111, 386, 423, 514, 568, 855
CspAI	ACCGGT	2 cut(s)	10, 455
CspI	CGGWCCG	1 cut(s)	453
CviAII	CATG	6 cut(s)	22, 418, 730, 1021, 1028, 1126
CviQI	GTAC	7 cut(s)	4, 111, 386, 423, 514, 568, 855
DdeI	CTNAG	4 cut(s)	28, 186, 279, 374
DpnI	GATC	6 cut(s)	315, 558, 780, 972, 1072, 1089
DpnII	GATC	6 cut(s)	313, 556, 778, 970, 1070, 1087
Eam1104I	CTCTTC	3 cut(s)	637, 670, 701
EarI	CTCTTC	3 cut(s)	637, 670, 701
Eco130I	CCWWGG	1 cut(s)	1020
Eco24I	GRGCYC	1 cut(s)	592
Eco31I	GGTCTC	1 cut(s)	622
Eco47I	GGWCC	2 cut(s)	448, 453
Eco57I	CTGAAG	2 cut(s)	978, 1044
EcoRI	GAATTC	1 cut(s)	959
EcoT14I	CCWWGG	1 cut(s)	1020
EcoT38I	GRGCYC	1 cut(s)	592
ErhI	CCWWGG	1 cut(s)	1020
Esp3I	CGTCTC	1 cut(s)	209
FaeI	CATG	6 cut(s)	25, 421, 733, 1024, 1031, 1129
FatI	CATG	6 cut(s)	21, 417, 729, 1020, 1027, 1125
FauI	CCCGC	2 cut(s)	365, 375
FbaI	TGATCA	2 cut(s)	970, 1087
Fnu4HI	GCNGC	7 cut(s)	118, 323, 653, 688, 868, 871, 1104
FokI	GGATG	2 cut(s)	617, 791
FriOI	GRGCYC	1 cut(s)	592
Fsp4HI	GCNGC	7 cut(s)	118, 323, 653, 688, 868, 871, 1104
FspBI	CTAG	3 cut(s)	114, 821, 1189
GlaI	GCGC	3 cut(s)	197, 326, 361
GluI	GCNGC	7 cut(s)	118, 323, 653, 688, 868, 871, 1104
GsaI	CCCAGC	1 cut(s)	501
GsuI	CTGGAG	2 cut(s)	212, 859
HaeII	RGCGCY	2 cut(s)	199, 328
HaeIII	GGCC	3 cut(s)	26, 157, 867
HapII	CCGG	8 cut(s)	11, 383, 451, 456, 749, 786, 817, 834
HgaI	GACGC	1 cut(s)	387
HhaI	GCGC	3 cut(s)	198, 327, 362
Hin1II	CATG	6 cut(s)	25, 421, 733, 1024, 1031, 1129
Hin6I	GCGC	3 cut(s)	196, 325, 360
HinP1I	GCGC	3 cut(s)	196, 325, 360
HincII	GTYRAC	1 cut(s)	769
HindII	GTYRAC	1 cut(s)	769
HindIII	AAGCTT	1 cut(s)	1080
HinfI	GANTC	5 cut(s)	53, 77, 711, 743, 789
HpaII	CCGG	8 cut(s)	11, 383, 451, 456, 749, 786, 817, 834
HphI	GGTGA	4 cut(s)	25, 308, 839, 950
Hpy166II	GTNNAC	2 cut(s)	769, 913
Hpy188I	TCNGA	8 cut(s)	31, 282, 471, 561, 679, 778, 1078, 1087
Hpy188III	TCNNGA	3 cut(s)	311, 619, 968
Hpy8I	GTNNAC	2 cut(s)	769, 913
HpyAV	CCTTC	2 cut(s)	913, 943
HpyCH4III	ACNGT	5 cut(s)	395, 475, 572, 773, 1182
HpyCH4V	TGCA	1 cut(s)	696
HpyF10VI	GCNNNNNNNGC	2 cut(s)	494, 693
HpyF3I	CTNAG	4 cut(s)	28, 186, 279, 374
Hsp92II	CATG	6 cut(s)	25, 421, 733, 1024, 1031, 1129
HspAI	GCGC	3 cut(s)	196, 325, 360
Ksp22I	TGATCA	2 cut(s)	970, 1087
Kzo9I	GATC	6 cut(s)	313, 556, 778, 970, 1070, 1087
LmnI	GCTCC	5 cut(s)	193, 413, 595, 878, 1024
Lsp1109I	GCAGC	5 cut(s)	129, 334, 664, 674, 1090
LweI	GCATC	1 cut(s)	6
MaeI	CTAG	3 cut(s)	114, 821, 1189
MaeIII	GTNAC	2 cut(s)	226, 1170
MalI	GATC	6 cut(s)	315, 558, 780, 972, 1072, 1089
MbiI	CCGCTC	1 cut(s)	873
MboI	GATC	6 cut(s)	313, 556, 778, 970, 1070, 1087
MfeI	CAATTG	1 cut(s)	715
MflI	RGATCY	1 cut(s)	556
MhlI	GDGCHC	2 cut(s)	44, 592
MluCI	AATT	5 cut(s)	233, 715, 959, 985, 1051
MmeI	TCCRAC	2 cut(s)	232, 426
MroXI	GAANNNNTTC	2 cut(s)	710, 963
MseI	TTAA	2 cut(s)	236, 477
MslI	CAYNNNNRTG	3 cut(s)	534, 1098, 1130
MspA1I	CMGCKG	2 cut(s)	190, 497
MspI	CCGG	8 cut(s)	11, 383, 451, 456, 749, 786, 817, 834
MspR9I	CCNGG	1 cut(s)	786
MunI	CAATTG	1 cut(s)	715
Mva1269I	GAATGC	2 cut(s)	378, 490
MvnI	CGCG	1 cut(s)	360
MwoI	GCNNNNNNNGC	2 cut(s)	494, 693
NciI	CCSGG	1 cut(s)	786
NcoI	CCATGG	1 cut(s)	1020
NdeII	GATC	6 cut(s)	313, 556, 778, 970, 1070, 1087
NheI	GCTAGC	1 cut(s)	820
NlaIII	CATG	6 cut(s)	25, 421, 733, 1024, 1031, 1129
NlaIV	GGNNCC	3 cut(s)	415, 558, 591
NmuCI	GTSAC	2 cut(s)	226, 1170
PaqCI	CACCTGC	1 cut(s)	923
PctI	GAATGC	2 cut(s)	378, 490
PdmI	GAANNNNTTC	2 cut(s)	710, 963
PfeI	GAWTC	5 cut(s)	53, 77, 711, 743, 789
PfoI	TCCNGGA	1 cut(s)	784
PinAI	ACCGGT	2 cut(s)	10, 455
PkrI	GCNGC	7 cut(s)	119, 324, 654, 689, 869, 872, 1105
PspFI	CCCAGC	1 cut(s)	497
PspN4I	GGNNCC	3 cut(s)	415, 558, 591
PspPI	GGNCC	3 cut(s)	448, 453, 865
PsuI	RGATCY	1 cut(s)	556
PvuII	CAGCTG	2 cut(s)	190, 497
RsaI	GTAC	7 cut(s)	5, 112, 387, 424, 515, 569, 856
RsaNI	GTAC	7 cut(s)	4, 111, 386, 423, 514, 568, 855
RseI	CAYNNNNRTG	3 cut(s)	534, 1098, 1130
Rsr2I	CGGWCCG	1 cut(s)	453
RsrII	CGGWCCG	1 cut(s)	453
SaqAI	TTAA	2 cut(s)	236, 477
SatI	GCNGC	7 cut(s)	118, 323, 653, 688, 868, 871, 1104
Sau3AI	GATC	6 cut(s)	313, 556, 778, 970, 1070, 1087
Sau96I	GGNCC	3 cut(s)	448, 453, 865
ScaI	AGTACT	2 cut(s)	112, 424
ScrFI	CCNGG	1 cut(s)	786
SduI	GDGCHC	2 cut(s)	44, 592
SfaNI	GCATC	1 cut(s)	6
SfcI	CTRYAG	1 cut(s)	1153
SinI	GGWCC	2 cut(s)	448, 453
SmiMI	CAYNNNNRTG	3 cut(s)	534, 1098, 1130
Sse9I	AATT	5 cut(s)	233, 715, 959, 985, 1051
SsiI	CCGC	5 cut(s)	358, 368, 837, 868, 871
SspI	AATATT	1 cut(s)	683
SspMI	CTAG	3 cut(s)	114, 821, 1189
StyD4I	CCNGG	1 cut(s)	784
StyI	CCWWGG	1 cut(s)	1020
TaaI	ACNGT	5 cut(s)	395, 475, 572, 773, 1182
TaqI	TCGA	2 cut(s)	620, 792
TasI	AATT	5 cut(s)	233, 715, 959, 985, 1051
TatI	WGTACW	3 cut(s)	3, 110, 422
TauI	GCSGC	2 cut(s)	870, 873
TfiI	GAWTC	5 cut(s)	53, 77, 711, 743, 789
Tru1I	TTAA	2 cut(s)	236, 477
Tru9I	TTAA	2 cut(s)	236, 477
TscAI	CASTG	1 cut(s)	1153
TseFI	GTSAC	2 cut(s)	226, 1170
TseI	GCWGC	5 cut(s)	117, 322, 652, 687, 1103
Tsp45I	GTSAC	2 cut(s)	226, 1170
TspDTI	ATGAA	6 cut(s)	518, 662, 663, 962, 972, 1032
TspGWI	ACGGA	1 cut(s)	191
TspRI	CASTG	1 cut(s)	1153
VpaK11BI	GGWCC	2 cut(s)	448, 453
XapI	RAATTY	1 cut(s)	959
XcmI	CCANNNNNNNNNTGG	1 cut(s)	173
XmnI	GAANNNNTTC	2 cut(s)	710, 963
XspI	CTAG	3 cut(s)	114, 821, 1189
ZrmI	AGTACT	2 cut(s)	112, 424

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.