Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008713.1

Orthogroup ID

OG0009241

Physical Location & Seq

Genomic Coordinates Reverse (-)

47427 .. 52419

Gene Structure 4993 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008713.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1716 bp

atgtcgatgctcgattccttcttcaacaagggcttcaaagctgccaaatgcaaaactctgctgaaattgacgattccgcggataaagttgttgaggaacaggagagaaattcagcttagacagatgcgccgtgacattgccaagcttcttgagactggccaggaagctacagctcggattcgggtggagcatattattagagaagagaatatgatggcagctcaggagatcatcgagctatatgctgagcttatttctgtccgccttccaatagttgaatcacaaagggagtgccctctagacttgaaagaagcaatatccagtgtgtgttttgctgcaccaagatgcgctgatctgccggagttgcttcaagttcaaatgctatttttatcaaaatatgggaaagaatttgtatcagctgcaacagagctaatgccagattgtggtgtcagtcgccagttgatagaactgctatctgttcgggctccttcagctgagaaaaagctgaagcttttgaaagaaattgctgaagagcatgaactggattgggatcctgctgcatctgaagctgaaattttcaaaccgcatgaggatttgctgaatggtccgacacagtttgtcagcgggtctaagttgccgcttcccgaagaaaaacatgatgagacgttgtaccgtgcacctgatcaagctcagaaagaacagtctgattctgatgatggtttggacgttttagactttccggaagttccgaaggtatcatcaagaccaactgagagtataccctcagcaccaacaatggctccaccttttccacccccaccacaccctgattttgatcacgagttatcaaaaaattctgaggcgattggacatccatccaaagagccgtcctttgagtctggagaagaaagagcaatggcagacaagcatgaatctcatgcttcagttggtcatggggatgatgtacagtttttgccatttatatctcctccatctctttcatctgcatcgtttcctgtgagacaaacgaatccaccaccaccctctctttcaagaagaaaaagtgaggtcaatgtagatatgcaagatgtgtcagctgctgctcaggctgctgcagattctgcagcgtttcctgtgagacaaacgaatccaccaccaccctctctttcaagaagaaaaagtgaggtcaatgtagatatgcaagatgtgttagctgctgctcaggctgctgcagattcggcagaacgtgcggcagcagcagctcgctcagcagctagtcttgcacaggtaagaataaatgagctgaccaagaaaaacaatgaagaagtatctgaaagtagctgtgaaaacccatttcatgaagacgttcctaatcagtcagctactaaagaaaagtcggattttgatcatcatatccccgatggtgattctagtggtgttataaattctccagaaccccatcaaggccatgaatatggccggggatcagagacatcaaatctttcgtttaaggactcggctaaagtggattttgattccccgcttgccagcgataatgtttttgaacatgagccagctcatcaccagcctcagagattgacttcaatggatgatgacccatacttctcgtacccaaacttattcacatcagaaaacaatgttggatctggtgctcagtcttctacagataattctcgcttctcgcatgaacactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Ist1

Protein Analysis

571

Amino Acids

63.01

Weight (kDa)

5.03

Isoelectric Point (pI)

54.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009241)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34220 AT1G34220
fragaria_vesca	FvH4_2g12480 FvH4_2g12480
malus_domestica	MD00G1078400.v1.1 MD10G1043300.v1.1
prunus_persica	Prupe.8G049000_v2.0.a1
pyrus_communis	pycom05g03090 pycom10g03030
rosa_chinensis	RchiOBHm_Chr6g0272921
rosa_laevigata	RLG00000013655
rosa_multiflora	Rmu_sc0008713.1_g000021
rosa_roxburghii	Rroxscaffold_7G00195920
rosa_rugosa	Rorug06G0071200 Rorug06G0071300 Rorug06G0071400.1 Rorug06G0071500
rosa_samantha	Rh6AG187100 Rh6BG190500 Rh6CG189800 Rh6DG181200
rosa_wichuraiana	Rw6G016210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1442
AccB7I	CCANNNNNTGG	1 cut(s)	443
AccI	GTMKAC	1 cut(s)	778
AccII	CGCG	1 cut(s)	79
AccIII	TCCGGA	1 cut(s)	739
AciI	CCGC	8 cut(s)	77, 79, 262, 584, 624, 638, 1250, 1541
AclWI	GGATC	4 cut(s)	545, 558, 1492, 1672
AcoI	YGGCCR	2 cut(s)	157, 1477
AcsI	RAATTY	5 cut(s)	108, 407, 573, 853, 1444
AcuI	CTGAAG	5 cut(s)	474, 527, 549, 585, 927
AfaI	GTAC	3 cut(s)	671, 966, 1631
AfiI	CCNNNNNNNGG	2 cut(s)	443, 1463
AjnI	CCWGG	1 cut(s)	159
AjuI	GAANNNNNNNTTGG	2 cut(s)	1644, 1676
Alw21I	GWGCWC	2 cut(s)	679, 1675
Alw26I	GTCTC	5 cut(s)	146, 656, 1015, 1132, 1484
Alw44I	GTGCAC	1 cut(s)	675
AlwI	GGATC	4 cut(s)	545, 558, 1492, 1672
AlwNI	CAGNNNCTG	2 cut(s)	1100, 1121
Aor13HI	TCCGGA	1 cut(s)	739
AoxI	GGCC	3 cut(s)	157, 1465, 1477
ApaLI	GTGCAC	1 cut(s)	675
ApoI	RAATTY	5 cut(s)	108, 407, 573, 853, 1444
Asp700I	GAANNNNTTC	1 cut(s)	1365
AspLEI	GCGC	2 cut(s)	129, 350
AspS9I	GGNCC	1 cut(s)	605
AsuC2I	CCSGG	1 cut(s)	1481
AsuHPI	GGTGA	2 cut(s)	1436, 1574
AvaII	GGWCC	1 cut(s)	605
BaeGI	GKGCMC	2 cut(s)	296, 679
BalI	TGGCCA	1 cut(s)	159
BamHI	GGATCC	1 cut(s)	550
BanII	GRGCYC	1 cut(s)	487
BauI	CACGAG	1 cut(s)	839
BbsI	GAAGAC	2 cut(s)	1368, 1671
Bbv12I	GWGCWC	2 cut(s)	679, 1675
BbvCI	CCTCAGC	1 cut(s)	784
BccI	CCATC	6 cut(s)	208, 710, 883, 1000, 1415, 1467
BceAI	ACGGC	2 cut(s)	114, 871
BcgI	CGANNNNNNTGC	2 cut(s)	224, 258
BciT130I	CCWGG	1 cut(s)	161
BclI	TGATCA	3 cut(s)	682, 835, 1405
BcnI	CCSGG	1 cut(s)	1481
BcoDI	GTCTC	5 cut(s)	146, 656, 1015, 1132, 1484
BfaI	CTAG	3 cut(s)	299, 1275, 1431
BfmI	CTRYAG	5 cut(s)	168, 1113, 1122, 1230, 1683
BlpI	GCTNAGC	2 cut(s)	246, 1267
Bme1390I	CCNGG	2 cut(s)	161, 1481
Bme18I	GGWCC	1 cut(s)	605
BmgT120I	GGNCC	1 cut(s)	605
BmiI	GGNNCC	3 cut(s)	486, 552, 801
BmrFI	CCNGG	2 cut(s)	161, 1481
BmsI	GCATC	4 cut(s)	114, 335, 569, 1016
BpiI	GAAGAC	2 cut(s)	1368, 1671
BpmI	CTGGAG	2 cut(s)	921, 1434
Bpu10I	CCTNAGC	4 cut(s)	222, 784, 1104, 1221
Bpu1102I	GCTNAGC	2 cut(s)	246, 1267
BpuEI	CTTGAG	1 cut(s)	170
BpuMI	CCSGG	1 cut(s)	1481
BsaBI	GATNNNNATC	3 cut(s)	549, 834, 1404
BsaJI	CCNNGG	2 cut(s)	77, 1480
BsaWI	WCCGGW	1 cut(s)	739
BsaXI	ACNNNNNCTCC	2 cut(s)	784, 814
Bsc4I	CCNNNNNNNGG	2 cut(s)	443, 1463
Bse1I	ACTGG	4 cut(s)	160, 321, 457, 546
Bse3DI	GCAATG	2 cut(s)	135, 921
Bse8I	GATNNNNATC	3 cut(s)	549, 834, 1404
BseAI	TCCGGA	1 cut(s)	739
BseBI	CCWGG	1 cut(s)	161
BseDI	CCNNGG	2 cut(s)	77, 1480
BseGI	GGATG	4 cut(s)	871, 875, 964, 1615
BseJI	GATNNNNATC	3 cut(s)	549, 834, 1404
BseLI	CCNNNNNNNGG	2 cut(s)	443, 1463
BseMI	GCAATG	2 cut(s)	135, 921
BseNI	ACTGG	4 cut(s)	160, 321, 457, 546
BseRI	GAGGAG	1 cut(s)	978
BseSI	GKGCMC	2 cut(s)	296, 679
BsgI	GTGCAG	1 cut(s)	321
Bsh1236I	CGCG	1 cut(s)	79
BshFI	GGCC	3 cut(s)	159, 1467, 1479
BsiHKAI	GWGCWC	2 cut(s)	679, 1675
BsiSI	CCGG	3 cut(s)	359, 740, 1480
BslI	CCNNNNNNNGG	2 cut(s)	443, 1463
BsmAI	GTCTC	5 cut(s)	146, 656, 1015, 1132, 1484
BsmBI	CGTCTC	1 cut(s)	656
BsnI	GGCC	3 cut(s)	159, 1467, 1479
Bsp1286I	GDGCHC	4 cut(s)	296, 487, 679, 1675
Bsp13I	TCCGGA	1 cut(s)	739
Bsp1407I	TGTACA	1 cut(s)	964
Bsp143I	GATC	8 cut(s)	228, 352, 550, 682, 835, 1405, 1484, 1664
Bsp1720I	GCTNAGC	2 cut(s)	246, 1267
BspACI	CCGC	8 cut(s)	77, 79, 262, 584, 624, 638, 1250, 1541
BspANI	GGCC	3 cut(s)	159, 1467, 1479
BspEI	TCCGGA	1 cut(s)	739
BspFNI	CGCG	1 cut(s)	79
BspHI	TCATGA	1 cut(s)	1357
BspLI	GGNNCC	3 cut(s)	486, 552, 801
BspMAI	CTGCAG	3 cut(s)	1117, 1126, 1234
BspPI	GGATC	4 cut(s)	545, 558, 1492, 1672
BspQI	GCTCTTC	1 cut(s)	525
BsrDI	GCAATG	2 cut(s)	135, 921
BsrGI	TGTACA	1 cut(s)	964
BsrI	ACTGG	4 cut(s)	160, 321, 457, 546
BssECI	CCNNGG	2 cut(s)	77, 1480
BssMI	GATC	8 cut(s)	228, 352, 550, 682, 835, 1405, 1484, 1664
BssNAI	GTATAC	1 cut(s)	779
BssSI	CACGAG	1 cut(s)	839
Bst1107I	GTATAC	1 cut(s)	779
Bst2BI	CACGAG	1 cut(s)	839
Bst2UI	CCWGG	1 cut(s)	161
Bst4CI	ACNGT	4 cut(s)	615, 674, 702, 969
Bst6I	CTCTTC	2 cut(s)	198, 525
BstAPI	GCANNNNNTGC	2 cut(s)	1121, 1247
BstAUI	TGTACA	1 cut(s)	964
BstC8I	GCNNGC	4 cut(s)	1264, 1545, 1549, 1575
BstDSI	CCRYGG	1 cut(s)	77
BstF5I	GGATG	4 cut(s)	871, 875, 964, 1615
BstFNI	CGCG	1 cut(s)	79
BstHHI	GCGC	2 cut(s)	129, 350
BstKTI	GATC	8 cut(s)	231, 355, 553, 685, 838, 1408, 1487, 1667
BstMAI	GTCTC	5 cut(s)	146, 656, 1015, 1132, 1484
BstMBI	GATC	8 cut(s)	228, 352, 550, 682, 835, 1405, 1484, 1664
BstNI	CCWGG	1 cut(s)	161
BstSCI	CCNGG	2 cut(s)	159, 1479
BstSFI	CTRYAG	5 cut(s)	168, 1113, 1122, 1230, 1683
BstSLI	GKGCMC	2 cut(s)	296, 679
BstUI	CGCG	1 cut(s)	79
BstV2I	GAAGAC	2 cut(s)	1368, 1671
BstX2I	RGATCY	2 cut(s)	550, 1664
BstXI	CCANNNNNNTGG	1 cut(s)	1475
BstYI	RGATCY	2 cut(s)	550, 1664
BstZ17I	GTATAC	1 cut(s)	779
BsuRI	GGCC	3 cut(s)	159, 1467, 1479
BtgI	CCRYGG	1 cut(s)	77
BtsCI	GGATG	4 cut(s)	871, 875, 964, 1615
BtsIMutI	CAGTG	2 cut(s)	328, 1711
Cac8I	GCNNGC	4 cut(s)	1264, 1545, 1549, 1575
CaiI	CAGNNNCTG	2 cut(s)	1100, 1121
CciI	TCATGA	1 cut(s)	1357
CfoI	GCGC	2 cut(s)	129, 350
Cfr13I	GGNCC	1 cut(s)	605
Cfr42I	CCGCGG	1 cut(s)	80
Csp6I	GTAC	3 cut(s)	670, 965, 1630
CviQI	GTAC	3 cut(s)	670, 965, 1630
DpnI	GATC	8 cut(s)	230, 354, 552, 684, 837, 1407, 1486, 1666
DpnII	GATC	8 cut(s)	228, 352, 550, 682, 835, 1405, 1484, 1664
EaeI	YGGCCR	2 cut(s)	157, 1477
Eam1104I	CTCTTC	2 cut(s)	198, 525
EarI	CTCTTC	2 cut(s)	198, 525
EciI	GGCGGA	1 cut(s)	251
Eco24I	GRGCYC	1 cut(s)	487
Eco47I	GGWCC	1 cut(s)	605
Eco57I	CTGAAG	5 cut(s)	474, 527, 549, 585, 927
EcoRII	CCWGG	1 cut(s)	159
EcoT38I	GRGCYC	1 cut(s)	487
Esp3I	CGTCTC	1 cut(s)	656
FauI	CCCGC	2 cut(s)	617, 1548
FbaI	TGATCA	3 cut(s)	682, 835, 1405
FblI	GTMKAC	1 cut(s)	778
FokI	GGATG	4 cut(s)	858, 862, 971, 1622
FriOI	GRGCYC	1 cut(s)	487
FspBI	CTAG	3 cut(s)	299, 1275, 1431
GlaI	GCGC	2 cut(s)	128, 349
GsuI	CTGGAG	2 cut(s)	921, 1434
HaeIII	GGCC	3 cut(s)	159, 1467, 1479
HapII	CCGG	3 cut(s)	359, 740, 1480
HhaI	GCGC	2 cut(s)	129, 350
Hin6I	GCGC	2 cut(s)	127, 348
HinP1I	GCGC	2 cut(s)	127, 348
HindIII	AAGCTT	2 cut(s)	143, 509
HpaII	CCGG	3 cut(s)	359, 740, 1480
HphI	GGTGA	2 cut(s)	1436, 1574
Hpy166II	GTNNAC	2 cut(s)	677, 779
Hpy8I	GTNNAC	2 cut(s)	677, 779
HpyAV	CCTTC	4 cut(s)	28, 275, 498, 745
HpyCH4III	ACNGT	4 cut(s)	615, 674, 702, 969
HpyCH4IV	ACGT	4 cut(s)	665, 726, 1246, 1365
HpySE526I	ACGT	4 cut(s)	665, 726, 1246, 1365
HspAI	GCGC	2 cut(s)	127, 348
Kpn2I	TCCGGA	1 cut(s)	739
Ksp22I	TGATCA	3 cut(s)	682, 835, 1405
KspI	CCGCGG	1 cut(s)	80
Kzo9I	GATC	8 cut(s)	228, 352, 550, 682, 835, 1405, 1484, 1664
LguI	GCTCTTC	1 cut(s)	525
LmnI	GCTCC	3 cut(s)	187, 490, 805
LweI	GCATC	4 cut(s)	114, 335, 569, 1016
MaeI	CTAG	3 cut(s)	299, 1275, 1431
MaeII	ACGT	4 cut(s)	665, 726, 1246, 1365
MaeIII	GTNAC	1 cut(s)	131
MalI	GATC	8 cut(s)	230, 354, 552, 684, 837, 1407, 1486, 1666
MboI	GATC	8 cut(s)	228, 352, 550, 682, 835, 1405, 1484, 1664
MflI	RGATCY	2 cut(s)	550, 1664
MhlI	GDGCHC	4 cut(s)	296, 487, 679, 1675
MlsI	TGGCCA	1 cut(s)	159
MluCI	AATT	8 cut(s)	65, 108, 407, 522, 573, 853, 1444, 1690
MluNI	TGGCCA	1 cut(s)	159
MlyI	GAGTC	2 cut(s)	905, 1508
MmeI	TCCRAC	3 cut(s)	632, 1377, 1642
Mox20I	TGGCCA	1 cut(s)	159
MroI	TCCGGA	1 cut(s)	739
MroXI	GAANNNNTTC	1 cut(s)	1365
MscI	TGGCCA	1 cut(s)	159
MseI	TTAA	1 cut(s)	1509
MslI	CAYNNNNRTG	3 cut(s)	343, 957, 1473
Msp20I	TGGCCA	1 cut(s)	159
MspA1I	CMGCKG	5 cut(s)	79, 419, 494, 624, 1097
MspI	CCGG	3 cut(s)	359, 740, 1480
MspR9I	CCNGG	2 cut(s)	161, 1481
MvaI	CCWGG	1 cut(s)	161
MvnI	CGCG	1 cut(s)	79
NciI	CCSGG	1 cut(s)	1481
NdeII	GATC	8 cut(s)	228, 352, 550, 682, 835, 1405, 1484, 1664
NlaIV	GGNNCC	3 cut(s)	486, 552, 801
NmeAIII	GCCGAG	1 cut(s)	1496
NmuCI	GTSAC	1 cut(s)	131
PagI	TCATGA	1 cut(s)	1357
PciSI	GCTCTTC	1 cut(s)	525
PdmI	GAANNNNTTC	1 cut(s)	1365
PflMI	CCANNNNNTGG	1 cut(s)	443
PleI	GAGTC	2 cut(s)	904, 1508
PpsI	GAGTC	2 cut(s)	904, 1508
PsiI	TTATAA	1 cut(s)	1442
Psp6I	CCWGG	1 cut(s)	159
PspGI	CCWGG	1 cut(s)	159
PspN4I	GGNNCC	3 cut(s)	486, 552, 801
PspPI	GGNCC	1 cut(s)	605
PstI	CTGCAG	3 cut(s)	1117, 1126, 1234
PstNI	CAGNNNCTG	2 cut(s)	1100, 1121
PsuI	RGATCY	2 cut(s)	550, 1664
PvuII	CAGCTG	3 cut(s)	419, 494, 1097
RsaI	GTAC	3 cut(s)	671, 966, 1631
RsaNI	GTAC	3 cut(s)	670, 965, 1630
RseI	CAYNNNNRTG	3 cut(s)	343, 957, 1473
SacII	CCGCGG	1 cut(s)	80
SapI	GCTCTTC	1 cut(s)	525
SaqAI	TTAA	1 cut(s)	1509
Sau3AI	GATC	8 cut(s)	228, 352, 550, 682, 835, 1405, 1484, 1664
Sau96I	GGNCC	1 cut(s)	605
SchI	GAGTC	2 cut(s)	905, 1508
ScrFI	CCNGG	2 cut(s)	161, 1481
SduI	GDGCHC	4 cut(s)	296, 487, 679, 1675
SfaNI	GCATC	4 cut(s)	114, 335, 569, 1016
SfcI	CTRYAG	5 cut(s)	168, 1113, 1122, 1230, 1683
Sfr303I	CCGCGG	1 cut(s)	80
SgrBI	CCGCGG	1 cut(s)	80
SinI	GGWCC	1 cut(s)	605
SmiMI	CAYNNNNRTG	3 cut(s)	343, 957, 1473
SmlI	CTYRAG	1 cut(s)	149
SmoI	CTYRAG	1 cut(s)	149
Sse9I	AATT	8 cut(s)	65, 108, 407, 522, 573, 853, 1444, 1690
SsiI	CCGC	8 cut(s)	77, 79, 262, 584, 624, 638, 1250, 1541
SspMI	CTAG	3 cut(s)	299, 1275, 1431
StyD4I	CCNGG	2 cut(s)	159, 1479
TaaI	ACNGT	4 cut(s)	615, 674, 702, 969
TaiI	ACGT	4 cut(s)	668, 729, 1249, 1368
TaqI	TCGA	3 cut(s)	5, 12, 234
TasI	AATT	8 cut(s)	65, 108, 407, 522, 573, 853, 1444, 1690
TatI	WGTACW	1 cut(s)	964
TauI	GCSGC	2 cut(s)	640, 1253
Tru1I	TTAA	1 cut(s)	1509
Tru9I	TTAA	1 cut(s)	1509
TscAI	CASTG	1 cut(s)	328
TseFI	GTSAC	1 cut(s)	131
Tsp45I	GTSAC	1 cut(s)	131
TspDTI	ATGAA	7 cut(s)	552, 945, 990, 1335, 1346, 1374, 1485
TspRI	CASTG	1 cut(s)	328
Van91I	CCANNNNNTGG	1 cut(s)	443
VneI	GTGCAC	1 cut(s)	675
VpaK11BI	GGWCC	1 cut(s)	605
XapI	RAATTY	5 cut(s)	108, 407, 573, 853, 1444
XbaI	TCTAGA	1 cut(s)	298
XmiI	GTMKAC	1 cut(s)	778
XmnI	GAANNNNTTC	1 cut(s)	1365
XspI	CTAG	3 cut(s)	299, 1275, 1431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.