Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0009241

Physical Location & Seq

Genomic Coordinates Reverse (-)

3384942 .. 3389121

Gene Structure 4180 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g03030.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGTCGATGCTCGATTCCTTCTTCAACAAGGGCTTCAAGGCGGCCAAATGCAAAACCCTGCTGAAATTGACGATTCCGCGGATGAAATTGTTAAGGAACAGGAGAGAAATTCAGATTAAACAGATGCGCCGCGACATTGCCAAACTTCTTGAGACTGGCCAAGAGGCTACTGCCAGGATTCGGGTGGAGCATATTATTAGAGAAGAGAATATGATGGCAGCTCATGAGATCCTTGAGCTATTTTGCGAGCTTATTGCTGTCCGCCTTCCAATTATTGAATCACAAAGGGAATGCCCTATAGACTTGAAAGAAGCAATATCCAGTGTGTGTTTTGCTGCGCCAAGATGTGCTGATCGATCGGAGTTGCTGCAAGTTCAAATGCTATTTGCCGCCAAATATGGGAAAGAATTTGTAGCAGCTGCAGCAGAGCTCATACCGGATTGTGGTGTCAATCGCCAGTTGATAGAACTGCTATCTGTTCGTGCTCCCTCACCTGAGAAAAAACTGAAGCTTCTTAAAGAAATTGCTGAAGAGCATGGCCTGGATTGGGATCCTGCTGCATCTGAAGCTGAAATTTACAAACCGCATGAAGATTTGTTGAGTGGTCCGACACAGTTTGTAAGTGGGTCTAAATTGCCCCTTCCCCAAGAAAAACATGATGAAACATTGCAATATGCCTCGGATCAAGCCCAGAAAGAACTGTCTGATTCTGATGACGGTTTGGACTCATTAGACTTTCCTGAAGTTCCTAAGCAGTCACTACGACCAAGTGCAAATCCAGCCTCAGCACCAATGATGCCTCCTCCTTTACCAACCCATCCACACCCTGAAATTGATCAAGACTTGTCAAACAAATGTGGGTCCATTCAAAATCAATCTAAAGAGCCATCCTTTGAGTCCGGAGAAGTGATGGAAGAAGGATCAGTAGCTAACAATCAGGAACAGTCTCATCTCTCGGTTGGCGGTGTGGAAGATAAGCAGTTTTTGCCATTTATTTCTGCCCCTTCACTTTCTTCTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Ist1

Protein Analysis

341

Amino Acids

37.82

Weight (kDa)

5.16

Isoelectric Point (pI)

57.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009241)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34220 AT1G34220
fragaria_vesca	FvH4_2g12480 FvH4_2g12480
malus_domestica	MD00G1078400.v1.1 MD10G1043300.v1.1
prunus_persica	Prupe.8G049000_v2.0.a1
pyrus_communis	pycom05g03090 pycom10g03030
rosa_chinensis	RchiOBHm_Chr6g0272921
rosa_laevigata	RLG00000013655
rosa_multiflora	Rmu_sc0008713.1_g000021
rosa_roxburghii	Rroxscaffold_7G00195920
rosa_rugosa	Rorug06G0071200 Rorug06G0071300 Rorug06G0071400.1 Rorug06G0071500
rosa_samantha	Rh6AG187100 Rh6BG190500 Rh6CG189800 Rh6DG181200
rosa_wichuraiana	Rw6G016210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	79, 132
AccIII	TCCGGA	1 cut(s)	899
AciI	CCGC	8 cut(s)	41, 77, 79, 130, 262, 390, 584, 963
AclWI	GGATC	5 cut(s)	223, 545, 558, 690, 928
AcoI	YGGCCR	2 cut(s)	42, 157
AcsI	RAATTY	3 cut(s)	108, 407, 573
AcuI	CTGAAG	4 cut(s)	527, 549, 585, 762
AfiI	CCNNNNNNNGG	4 cut(s)	180, 399, 443, 547
AgsI	TTSAA	6 cut(s)	25, 37, 278, 307, 377, 869
AjnI	CCWGG	2 cut(s)	173, 540
AluBI	AGCT	8 cut(s)	221, 238, 250, 419, 430, 511, 569, 929
AluI	AGCT	8 cut(s)	221, 238, 250, 419, 430, 511, 569, 929
Alw21I	GWGCWC	2 cut(s)	432, 487
Alw26I	GTCTC	2 cut(s)	146, 951
AlwI	GGATC	5 cut(s)	223, 545, 558, 690, 928
Aor13HI	TCCGGA	1 cut(s)	899
AoxI	GGCC	3 cut(s)	42, 157, 538
ApeKI	GCWGC	7 cut(s)	218, 335, 367, 416, 419, 422, 557
ApoI	RAATTY	3 cut(s)	108, 407, 573
AspLEI	GCGC	2 cut(s)	129, 340
AspS9I	GGNCC	2 cut(s)	605, 861
AsuHPI	GGTGA	1 cut(s)	483
AvaII	GGWCC	2 cut(s)	605, 861
BalI	TGGCCA	1 cut(s)	159
BamHI	GGATCC	1 cut(s)	550
BanII	GRGCYC	1 cut(s)	432
Bbv12I	GWGCWC	2 cut(s)	432, 487
BbvCI	CCTCAGC	1 cut(s)	784
BbvI	GCAGC	7 cut(s)	230, 322, 354, 406, 428, 434, 544
BccI	CCATC	4 cut(s)	208, 825, 895, 904
BcgI	CGANNNNNNTGC	2 cut(s)	236, 270
BciT130I	CCWGG	2 cut(s)	175, 542
BclI	TGATCA	1 cut(s)	835
BcoDI	GTCTC	2 cut(s)	146, 951
BfmI	CTRYAG	2 cut(s)	297, 420
Bme1390I	CCNGG	2 cut(s)	175, 542
Bme18I	GGWCC	2 cut(s)	605, 861
BmgT120I	GGNCC	2 cut(s)	605, 861
BmiI	GGNNCC	2 cut(s)	552, 862
BmrFI	CCNGG	2 cut(s)	175, 542
BmsI	GCATC	3 cut(s)	114, 569, 786
Bpu10I	CCTNAGC	2 cut(s)	750, 784
BpuEI	CTTGAG	2 cut(s)	170, 254
Bsa29I	ATCGAT	1 cut(s)	355
BsaBI	GATNNNNATC	1 cut(s)	549
BsaJI	CCNNGG	2 cut(s)	77, 678
BsaWI	WCCGGW	2 cut(s)	436, 899
Bsc4I	CCNNNNNNNGG	4 cut(s)	180, 399, 443, 547
Bse1I	ACTGG	3 cut(s)	160, 321, 457
Bse3DI	GCAATG	2 cut(s)	135, 665
Bse8I	GATNNNNATC	1 cut(s)	549
BseAI	TCCGGA	1 cut(s)	899
BseBI	CCWGG	2 cut(s)	175, 542
BseCI	ATCGAT	1 cut(s)	355
BseDI	CCNNGG	2 cut(s)	77, 678
BseGI	GGATG	3 cut(s)	87, 817, 887
BseJI	GATNNNNATC	1 cut(s)	549
BseLI	CCNNNNNNNGG	4 cut(s)	180, 399, 443, 547
BseMI	GCAATG	2 cut(s)	135, 665
BseMII	CTCAG	2 cut(s)	486, 798
BseNI	ACTGG	3 cut(s)	160, 321, 457
BseRI	GAGGAG	1 cut(s)	792
BseXI	GCAGC	7 cut(s)	230, 322, 354, 406, 428, 434, 544
Bsh1236I	CGCG	2 cut(s)	79, 132
Bsh1285I	CGRYCG	1 cut(s)	359
BshFI	GGCC	3 cut(s)	44, 159, 540
BshVI	ATCGAT	1 cut(s)	355
BsiEI	CGRYCG	1 cut(s)	359
BsiHKAI	GWGCWC	2 cut(s)	432, 487
BsiSI	CCGG	2 cut(s)	437, 900
BslI	CCNNNNNNNGG	4 cut(s)	180, 399, 443, 547
BsmAI	GTCTC	2 cut(s)	146, 951
BsmI	GAATGC	1 cut(s)	296
BsnI	GGCC	3 cut(s)	44, 159, 540
Bsp1286I	GDGCHC	2 cut(s)	432, 487
Bsp13I	TCCGGA	1 cut(s)	899
Bsp143I	GATC	7 cut(s)	228, 352, 356, 550, 682, 835, 920
BspACI	CCGC	8 cut(s)	41, 77, 79, 130, 262, 390, 584, 963
BspANI	GGCC	3 cut(s)	44, 159, 540
BspCNI	CTCAG	2 cut(s)	487, 797
BspDI	ATCGAT	1 cut(s)	355
BspEI	TCCGGA	1 cut(s)	899
BspFNI	CGCG	2 cut(s)	79, 132
BspHI	TCATGA	1 cut(s)	223
BspLI	GGNNCC	2 cut(s)	552, 862
BspMAI	CTGCAG	1 cut(s)	424
BspPI	GGATC	5 cut(s)	223, 545, 558, 690, 928
BspQI	GCTCTTC	1 cut(s)	525
BsrDI	GCAATG	2 cut(s)	135, 665
BsrI	ACTGG	3 cut(s)	160, 321, 457
BssECI	CCNNGG	2 cut(s)	77, 678
BssMI	GATC	7 cut(s)	228, 352, 356, 550, 682, 835, 920
Bst2UI	CCWGG	2 cut(s)	175, 542
Bst4CI	ACNGT	4 cut(s)	615, 702, 719, 945
Bst6I	CTCTTC	2 cut(s)	198, 525
BstAPI	GCANNNNNTGC	1 cut(s)	985
BstC8I	GCNNGC	1 cut(s)	248
BstDEI	CTNAG	3 cut(s)	495, 750, 784
BstDSI	CCRYGG	1 cut(s)	77
BstF5I	GGATG	3 cut(s)	87, 817, 887
BstFNI	CGCG	2 cut(s)	79, 132
BstHHI	GCGC	2 cut(s)	129, 340
BstKTI	GATC	7 cut(s)	231, 355, 359, 553, 685, 838, 923
BstMAI	GTCTC	2 cut(s)	146, 951
BstMBI	GATC	7 cut(s)	228, 352, 356, 550, 682, 835, 920
BstMCI	CGRYCG	1 cut(s)	359
BstMWI	GCNNNNNNNGC	4 cut(s)	422, 566, 779, 985
BstNI	CCWGG	2 cut(s)	175, 542
BstSCI	CCNGG	2 cut(s)	173, 540
BstSFI	CTRYAG	2 cut(s)	297, 420
BstUI	CGCG	2 cut(s)	79, 132
BstV1I	GCAGC	7 cut(s)	230, 322, 354, 406, 428, 434, 544
BstX2I	RGATCY	2 cut(s)	228, 550
BstYI	RGATCY	2 cut(s)	228, 550
Bsu15I	ATCGAT	1 cut(s)	355
BsuRI	GGCC	3 cut(s)	44, 159, 540
BsuTUI	ATCGAT	1 cut(s)	355
BtgI	CCRYGG	1 cut(s)	77
BtsCI	GGATG	3 cut(s)	87, 817, 887
BtsIMutI	CAGTG	1 cut(s)	328
Cac8I	GCNNGC	1 cut(s)	248
CciI	TCATGA	1 cut(s)	223
CfoI	GCGC	2 cut(s)	129, 340
Cfr13I	GGNCC	2 cut(s)	605, 861
Cfr42I	CCGCGG	1 cut(s)	80
ClaI	ATCGAT	1 cut(s)	355
CviAII	CATG	4 cut(s)	224, 536, 587, 656
DdeI	CTNAG	3 cut(s)	495, 750, 784
DpnI	GATC	7 cut(s)	230, 354, 358, 552, 684, 837, 922
DpnII	GATC	7 cut(s)	228, 352, 356, 550, 682, 835, 920
EaeI	YGGCCR	2 cut(s)	42, 157
Eam1104I	CTCTTC	2 cut(s)	198, 525
EarI	CTCTTC	2 cut(s)	198, 525
EciI	GGCGGA	1 cut(s)	251
Ecl136II	GAGCTC	1 cut(s)	430
Eco24I	GRGCYC	1 cut(s)	432
Eco47I	GGWCC	2 cut(s)	605, 861
Eco53kI	GAGCTC	1 cut(s)	430
Eco57I	CTGAAG	4 cut(s)	527, 549, 585, 762
EcoICRI	GAGCTC	1 cut(s)	430
EcoRII	CCWGG	2 cut(s)	173, 540
EcoT38I	GRGCYC	1 cut(s)	432
FaeI	CATG	4 cut(s)	227, 539, 590, 659
FatI	CATG	4 cut(s)	223, 535, 586, 655
FbaI	TGATCA	1 cut(s)	835
FokI	GGATG	3 cut(s)	94, 804, 874
FriOI	GRGCYC	1 cut(s)	432
GlaI	GCGC	2 cut(s)	128, 339
HaeIII	GGCC	3 cut(s)	44, 159, 540
HapII	CCGG	2 cut(s)	437, 900
HhaI	GCGC	2 cut(s)	129, 340
Hin1II	CATG	4 cut(s)	227, 539, 590, 659
Hin6I	GCGC	2 cut(s)	127, 338
HinP1I	GCGC	2 cut(s)	127, 338
HindIII	AAGCTT	1 cut(s)	509
HinfI	GANTC	7 cut(s)	14, 73, 178, 278, 707, 725, 896
HpaII	CCGG	2 cut(s)	437, 900
HphI	GGTGA	1 cut(s)	483
Hpy188I	TCNGA	7 cut(s)	114, 361, 565, 609, 682, 706, 712
Hpy188III	TCNNGA	6 cut(s)	149, 224, 740, 839, 900, 938
HpyAV	CCTTC	5 cut(s)	28, 275, 650, 911, 1014
HpyCH4III	ACNGT	4 cut(s)	615, 702, 719, 945
HpyCH4V	TGCA	7 cut(s)	51, 370, 422, 560, 670, 773, 1019
HpyF10VI	GCNNNNNNNGC	4 cut(s)	422, 566, 779, 985
HpyF3I	CTNAG	3 cut(s)	495, 750, 784
Hsp92II	CATG	4 cut(s)	227, 539, 590, 659
HspAI	GCGC	2 cut(s)	127, 338
Kpn2I	TCCGGA	1 cut(s)	899
Ksp22I	TGATCA	1 cut(s)	835
KspI	CCGCGG	1 cut(s)	80
Kzo9I	GATC	7 cut(s)	228, 352, 356, 550, 682, 835, 920
LguI	GCTCTTC	1 cut(s)	525
LmnI	GCTCC	2 cut(s)	187, 490
Lsp1109I	GCAGC	7 cut(s)	230, 322, 354, 406, 428, 434, 544
LweI	GCATC	3 cut(s)	114, 569, 786
MaeIII	GTNAC	1 cut(s)	756
MalI	GATC	7 cut(s)	230, 354, 358, 552, 684, 837, 922
MboI	GATC	7 cut(s)	228, 352, 356, 550, 682, 835, 920
MboII	GAAGA	7 cut(s)	13, 215, 542, 602, 926, 983, 1005
MflI	RGATCY	2 cut(s)	228, 550
MhlI	GDGCHC	2 cut(s)	432, 487
MlsI	TGGCCA	1 cut(s)	159
MluCI	AATT	9 cut(s)	65, 86, 108, 270, 407, 522, 573, 632, 831
MluNI	TGGCCA	1 cut(s)	159
MlyI	GAGTC	2 cut(s)	719, 905
MmeI	TCCRAC	1 cut(s)	632
MnlI	CCTC	6 cut(s)	157, 499, 688, 793, 810, 813
Mox20I	TGGCCA	1 cut(s)	159
MroI	TCCGGA	1 cut(s)	899
MscI	TGGCCA	1 cut(s)	159
MseI	TTAA	3 cut(s)	92, 117, 516
Msp20I	TGGCCA	1 cut(s)	159
MspA1I	CMGCKG	2 cut(s)	79, 419
MspI	CCGG	2 cut(s)	437, 900
MspR9I	CCNGG	2 cut(s)	175, 542
Mva1269I	GAATGC	1 cut(s)	296
MvaI	CCWGG	2 cut(s)	175, 542
MvnI	CGCG	2 cut(s)	79, 132
MwoI	GCNNNNNNNGC	4 cut(s)	422, 566, 779, 985
NdeII	GATC	7 cut(s)	228, 352, 356, 550, 682, 835, 920
NlaIII	CATG	4 cut(s)	227, 539, 590, 659
NlaIV	GGNNCC	2 cut(s)	552, 862
NmuCI	GTSAC	1 cut(s)	756
PagI	TCATGA	1 cut(s)	223
PciSI	GCTCTTC	1 cut(s)	525
PctI	GAATGC	1 cut(s)	296
PfeI	GAWTC	5 cut(s)	14, 73, 178, 278, 707
Ple19I	CGATCG	1 cut(s)	359
PleI	GAGTC	2 cut(s)	719, 904
PpsI	GAGTC	2 cut(s)	719, 904
Psp124BI	GAGCTC	1 cut(s)	432
Psp6I	CCWGG	2 cut(s)	173, 540
PspGI	CCWGG	2 cut(s)	173, 540
PspN4I	GGNNCC	2 cut(s)	552, 862
PspPI	GGNCC	2 cut(s)	605, 861
PstI	CTGCAG	1 cut(s)	424
PsuI	RGATCY	2 cut(s)	228, 550
PvuI	CGATCG	1 cut(s)	359
PvuII	CAGCTG	1 cut(s)	419
SacI	GAGCTC	1 cut(s)	432
SacII	CCGCGG	1 cut(s)	80
SapI	GCTCTTC	1 cut(s)	525
SaqAI	TTAA	3 cut(s)	92, 117, 516
Sau3AI	GATC	7 cut(s)	228, 352, 356, 550, 682, 835, 920
Sau96I	GGNCC	2 cut(s)	605, 861
SchI	GAGTC	2 cut(s)	719, 905
ScrFI	CCNGG	2 cut(s)	175, 542
SduI	GDGCHC	2 cut(s)	432, 487
SetI	ASST	9 cut(s)	223, 240, 252, 421, 432, 496, 513, 571, 931
SfaNI	GCATC	3 cut(s)	114, 569, 786
SfcI	CTRYAG	2 cut(s)	297, 420
Sfr303I	CCGCGG	1 cut(s)	80
SgrBI	CCGCGG	1 cut(s)	80
SinI	GGWCC	2 cut(s)	605, 861
SmlI	CTYRAG	2 cut(s)	149, 233
SmoI	CTYRAG	2 cut(s)	149, 233
Sse9I	AATT	9 cut(s)	65, 86, 108, 270, 407, 522, 573, 632, 831
SsiI	CCGC	8 cut(s)	41, 77, 79, 130, 262, 390, 584, 963
SstI	GAGCTC	1 cut(s)	432
StyD4I	CCNGG	2 cut(s)	173, 540
TaaI	ACNGT	4 cut(s)	615, 702, 719, 945
TaqI	TCGA	3 cut(s)	5, 12, 355
TasI	AATT	9 cut(s)	65, 86, 108, 270, 407, 522, 573, 632, 831
TauI	GCSGC	3 cut(s)	44, 132, 392
TfiI	GAWTC	5 cut(s)	14, 73, 178, 278, 707
Tru1I	TTAA	3 cut(s)	92, 117, 516
Tru9I	TTAA	3 cut(s)	92, 117, 516
TscAI	CASTG	1 cut(s)	328
TseFI	GTSAC	1 cut(s)	756
TseI	GCWGC	7 cut(s)	218, 335, 367, 416, 419, 422, 557
Tsp45I	GTSAC	1 cut(s)	756
TspDTI	ATGAA	3 cut(s)	98, 603, 675
TspRI	CASTG	1 cut(s)	328
VpaK11BI	GGWCC	2 cut(s)	605, 861
XapI	RAATTY	3 cut(s)	108, 407, 573
XcmI	CCANNNNNNNNNTGG	1 cut(s)	181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.