Prupe.8G110000_v2.0.a1

TMV resistance protein N-like

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
Physical Location & Seq
Forward (+)
13951350 .. 13955648
4299 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G110000.1

Sequence Viewer

Length: 1773 bp
ATGATCGAATATGTCACATTGTTTGATTGTCAGAAACTATGTGACAATCTGGCTCATGAAGCGTCAAAGATAGAATATAATTCATTGAATAAGGTCAGCCTCTGCTCTGTTTTTCTCTCCTCTAAGCAATCACAATTCCTGGTTGTATTTCCCGGAAGCGAAGTTCCAAAGTGGTTCAGCCATCGTGAAGATTTGTATGAGCTAAGTGACAAATATGAGTTTTCTTTAAAAATCCCTCAGAATTTCAAACTTGAGAACAGCGGATTGGCTATCTGTGCTGATGTTGAAATTAACAAGGAATTGAAAGATACTATACAAAGTAAGTTTGGTGTTGAAACTAGCCAAAAAGAGGAAGACAATTCACAAAGTAATTTTGGTCGTTGCTCGTTTACAGCCAGAATTGACATGAATACAGAAAGTGTTGCGGCACATTCGATTTTCTTTGAACAAACATATTTGGAATCAGCTCATGTGTGGCTGCTTTATGTTCCATTTGTTAAGTTTGTGCAATGTCCATTGCCTCCTTTTTTGTGCCGAGTTAGTTTGGAACATACTACCCAGGATTTGGTGTGCTGTAAAAGCTATGGGGTCCACCTAGTAATGCCACAAGATGAAGACTTGGAAGATGATGAAGATGATGAAGATGATTTGAAATCGGCAGAGTATATTAATAGTAGAGGTTGCAGAATGCTAGAGCATTTTCCCGAACTTTTGTTGGTAAGGATGGAAGGCTTAACATTCTTGGATCTATCCACCACTGCCATCAGAGAATTGCCTTCATCGATTCGATATCTCATTAGGCTTGAAATGTTATTTTTAAAAGAATGTGAAAACCTTACAAATCTACCCTGCAGCATCTATGAGCTCAAAGATCTACTTTCTGTCAATCTGTCTGGATGCCGAAATCTTTCTACTCTTCCAAAATGGACTGGAGGGTCCCTTCCAAATAACTCGAGTATTTCAAACTTGTGGCATGTTCGTGTGAGGGGTTGCAAGAGCCTTCAAGAAATTCCGGAACTTCCACCAAAAGTGGAATATGTGGATGCGGCTGACTGCATATCATTGGAACGATTTGCAAAATTGTCAAGCATCTTAGAGCATAAAGATTCACAAATGATCAAATCTGTATCATTGCTTAATTGTAAGAAACTGTGTGACACTCTGGCTCAAGACGTCACGAAGATTGAAAACATTCTACTGAATGAGGGGAGTCTATGCTCTGTCTTTCTCACTTCTAAGCAATCTCAATTCGACATTGTATTTCCCGGAAGTGAAGTTCCAAAGTGGTTCAGCCATCGTGAGGATTTGTATGAGCTGATTGATAGATCAGAGTTTTTTTTCCAAATCCCTCTAAATTTCAAACCGGAGAACAGAGGATTGGCTATCTGTGCTGCTGCTGAAATTAGCCAAACGGAAAAAGAAATTACTCAGAGTGATTTTGATCGTTGCTATTTCACAGCCAGAATTGACATTAATGCAGAAACGTTTGCCACACTTTCGTTTAATTTTAAAGCAAAAGCTATGAAGTCAGCTCATGTGTGGCTGCTCTATATTCCATTTGTTAAGATTGTACAGTATCTATCGACGCCTTTTATGCGTCCACTAAGTACTTGTCGGGTTAGTTTGGAACATACTAGCGAAGGTTCAATGTGCTGCACGAGCTATGGAGTCCACCTGGTAATGCTGCCTCAAGATGAAGACTTGGAACATGAGGAAACTCATGAAGACTTGGAAGATGAGTACTTCACCTGTGAAGATGATGAAGACATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

591

Amino Acids

67.66

Weight (kDa)

4.76

Isoelectric Point (pI)

38.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 934
AatII GACGTC 1 cut(s) 1176
AccB7I CCANNNNNTGG 1 cut(s) 565
AccIII TCCGGA 1 cut(s) 1012
AciI CCGC 3 cut(s) 261, 425, 1046
AclI AACGTT 1 cut(s) 1484
AclWI GGATC 1 cut(s) 753
AcsI RAATTY 3 cut(s) 241, 1008, 1354
AcyI GRCGYC 2 cut(s) 1173, 1586
AfaI GTAC 3 cut(s) 1572, 1609, 1742
AfiI CCNNNNNNNGG 3 cut(s) 349, 565, 1300
AjnI CCWGG 3 cut(s) 138, 558, 1674
AjuI GAANNNNNNNTTGG 4 cut(s) 248, 280, 1361, 1393
AloI GAACNNNNNNTCC 4 cut(s) 147, 179, 1260, 1292
AluBI AGCT 8 cut(s) 202, 467, 582, 865, 1315, 1520, 1532, 1662
AluI AGCT 8 cut(s) 202, 467, 582, 865, 1315, 1520, 1532, 1662
Alw21I GWGCWC 1 cut(s) 867
AlwI GGATC 1 cut(s) 753
AlwNI CAGNNNCTG 1 cut(s) 102
Ama87I CYCGRG 1 cut(s) 952
Aor13HI TCCGGA 1 cut(s) 1012
ApeKI GCWGC 7 cut(s) 478, 852, 1391, 1394, 1543, 1653, 1684
ApoI RAATTY 3 cut(s) 241, 1008, 1354
AseI ATTAAT 2 cut(s) 669, 1473
Asp700I GAANNNNTTC 2 cut(s) 907, 1191
AspS9I GGNCC 2 cut(s) 589, 936
AsuC2I CCSGG 2 cut(s) 153, 1266
AsuHPI GGTGA 1 cut(s) 1738
AvaI CYCGRG 1 cut(s) 952
AvaII GGWCC 2 cut(s) 589, 936
BanII GRGCYC 1 cut(s) 867
BauI CACGAG 1 cut(s) 1657
BbsI GAAGAC 4 cut(s) 360, 621, 1704, 1731
Bbv12I GWGCWC 1 cut(s) 867
BbvI GCAGC 7 cut(s) 465, 864, 1378, 1381, 1530, 1640, 1671
BccI CCATC 4 cut(s) 189, 718, 770, 1302
BciT130I CCWGG 3 cut(s) 140, 560, 1676
BclI TGATCA 1 cut(s) 1116
BcnI CCSGG 2 cut(s) 153, 1266
BfaI CTAG 4 cut(s) 339, 596, 692, 1635
BfmI CTRYAG 1 cut(s) 850
BglII AGATCT 1 cut(s) 871
BisI GCNGC 9 cut(s) 426, 479, 853, 1047, 1392, 1395, 1544, 1654, 1685
BlsI GCNGC 9 cut(s) 427, 480, 854, 1048, 1393, 1396, 1545, 1655, 1686
BmcAI AGTACT 2 cut(s) 1609, 1742
Bme1390I CCNGG 5 cut(s) 140, 153, 560, 1266, 1676
Bme18I GGWCC 2 cut(s) 589, 936
BmeT110I CYCGRG 1 cut(s) 952
BmgT120I GGNCC 2 cut(s) 589, 936
BmiI GGNNCC 3 cut(s) 590, 937, 938
BmrFI CCNGG 5 cut(s) 140, 153, 560, 1266, 1676
BmsI GCATC 4 cut(s) 864, 887, 1033, 1098
BpiI GAAGAC 4 cut(s) 360, 621, 1704, 1731
BpmI CTGGAG 1 cut(s) 951
BpuEI CTTGAG 3 cut(s) 272, 1152, 1674
BpuMI CCSGG 2 cut(s) 153, 1266
Bsa29I ATCGAT 1 cut(s) 782
BsaBI GATNNNNATC 1 cut(s) 1440
BsaHI GRCGYC 2 cut(s) 1173, 1586
BsaJI CCNNGG 1 cut(s) 558
BsaWI WCCGGW 2 cut(s) 1012, 1363
Bsc4I CCNNNNNNNGG 3 cut(s) 349, 565, 1300
Bse1I ACTGG 1 cut(s) 934
Bse3DI GCAATG 3 cut(s) 515, 515, 1130
Bse8I GATNNNNATC 1 cut(s) 1440
BseAI TCCGGA 1 cut(s) 1012
BseBI CCWGG 3 cut(s) 140, 560, 1676
BseCI ATCGAT 1 cut(s) 782
BseDI CCNNGG 1 cut(s) 558
BseGI GGATG 3 cut(s) 729, 902, 1048
BseJI GATNNNNATC 1 cut(s) 1440
BseLI CCNNNNNNNGG 3 cut(s) 349, 565, 1300
BseMI GCAATG 3 cut(s) 515, 515, 1130
BseMII CTCAG 2 cut(s) 251, 1442
BseNI ACTGG 1 cut(s) 934
BseRI GAGGAG 1 cut(s) 109
BseXI GCAGC 7 cut(s) 465, 864, 1378, 1381, 1530, 1640, 1671
BsgI GTGCAG 1 cut(s) 1639
BshVI ATCGAT 1 cut(s) 782
BsiHKAI GWGCWC 1 cut(s) 867
BsiHKCI CYCGRG 1 cut(s) 952
BsiSI CCGG 4 cut(s) 153, 1013, 1266, 1364
BslFI GGGAC 1 cut(s) 922
BslI CCNNNNNNNGG 3 cut(s) 349, 565, 1300
BsmFI GGGAC 1 cut(s) 922
BsmI GAATGC 1 cut(s) 693
BsoBI CYCGRG 1 cut(s) 952
Bsp1286I GDGCHC 1 cut(s) 867
Bsp13I TCCGGA 1 cut(s) 1012
Bsp1407I TGTACA 1 cut(s) 1570
Bsp143I GATC 6 cut(s) 3, 745, 871, 1116, 1325, 1441
BspACI CCGC 3 cut(s) 261, 425, 1046
BspCNI CTCAG 2 cut(s) 250, 1441
BspDI ATCGAT 1 cut(s) 782
BspEI TCCGGA 1 cut(s) 1012
BspHI TCATGA 2 cut(s) 55, 1720
BspLI GGNNCC 3 cut(s) 590, 937, 938
BspMAI CTGCAG 1 cut(s) 854
BspPI GGATC 1 cut(s) 753
BsrDI GCAATG 3 cut(s) 515, 515, 1130
BsrGI TGTACA 1 cut(s) 1570
BsrI ACTGG 1 cut(s) 934
BssECI CCNNGG 1 cut(s) 558
BssMI GATC 6 cut(s) 3, 745, 871, 1116, 1325, 1441
BssNI GRCGYC 2 cut(s) 1173, 1586
BssSI CACGAG 1 cut(s) 1657
Bst2BI CACGAG 1 cut(s) 1657
Bst2UI CCWGG 3 cut(s) 140, 560, 1676
Bst4CI ACNGT 2 cut(s) 1152, 1575
Bst6I CTCTTC 1 cut(s) 921
BstACI GRCGYC 2 cut(s) 1173, 1586
BstAUI TGTACA 1 cut(s) 1570
BstDEI CTNAG 7 cut(s) 123, 203, 237, 1093, 1236, 1428, 1604
BstF5I GGATG 3 cut(s) 729, 902, 1048
BstKTI GATC 6 cut(s) 6, 748, 874, 1119, 1328, 1444
BstMBI GATC 6 cut(s) 3, 745, 871, 1116, 1325, 1441
BstMWI GCNNNNNNNGC 6 cut(s) 59, 275, 579, 1388, 1594, 1659
BstNI CCWGG 3 cut(s) 140, 560, 1676
BstNSI RCATGY 1 cut(s) 977
BstSCI CCNGG 5 cut(s) 138, 151, 558, 1264, 1674
BstSFI CTRYAG 1 cut(s) 850
BstV1I GCAGC 7 cut(s) 465, 864, 1378, 1381, 1530, 1640, 1671
BstV2I GAAGAC 4 cut(s) 360, 621, 1704, 1731
BstX2I RGATCY 2 cut(s) 745, 871
BstYI RGATCY 2 cut(s) 745, 871
Bsu15I ATCGAT 1 cut(s) 782
BsuTUI ATCGAT 1 cut(s) 782
BtsCI GGATG 3 cut(s) 729, 902, 1048
BtsI GCAGTG 1 cut(s) 756
BtsIMutI CAGTG 1 cut(s) 756
CaiI CAGNNNCTG 1 cut(s) 102
CciI TCATGA 2 cut(s) 55, 1720
Cfr13I GGNCC 2 cut(s) 589, 936
ClaI ATCGAT 1 cut(s) 782
CseI GACGC 3 cut(s) 51, 1586, 1594
CsiI ACCWGGT 1 cut(s) 1674
Csp6I GTAC 3 cut(s) 1571, 1608, 1741
CviAII CATG 7 cut(s) 56, 406, 470, 974, 1535, 1709, 1721
CviQI GTAC 3 cut(s) 1571, 1608, 1741
DdeI CTNAG 7 cut(s) 123, 203, 237, 1093, 1236, 1428, 1604
DpnI GATC 6 cut(s) 5, 747, 873, 1118, 1327, 1443
DpnII GATC 6 cut(s) 3, 745, 871, 1116, 1325, 1441
DraI TTTAAA 3 cut(s) 228, 819, 1510
DrdI GACNNNNNNGTC 1 cut(s) 934
DseDI GACNNNNNNGTC 1 cut(s) 934
Eam1104I CTCTTC 1 cut(s) 921
EarI CTCTTC 1 cut(s) 921
Ecl136II GAGCTC 1 cut(s) 865
Eco24I GRGCYC 1 cut(s) 867
Eco32I GATATC 1 cut(s) 791
Eco47I GGWCC 2 cut(s) 589, 936
Eco53kI GAGCTC 1 cut(s) 865
Eco88I CYCGRG 1 cut(s) 952
EcoICRI GAGCTC 1 cut(s) 865
EcoO109I RGGNCCY 1 cut(s) 936
EcoRII CCWGG 3 cut(s) 138, 558, 1674
EcoRV GATATC 1 cut(s) 791
EcoT38I GRGCYC 1 cut(s) 867
FaeI CATG 7 cut(s) 59, 409, 473, 977, 1538, 1712, 1724
FalI AAGNNNNNCTT 2 cut(s) 861, 893
FaqI GGGAC 1 cut(s) 922
FatI CATG 7 cut(s) 55, 405, 469, 973, 1534, 1708, 1720
FauNDI CATATG 1 cut(s) 1769
FbaI TGATCA 1 cut(s) 1116
Fnu4HI GCNGC 9 cut(s) 426, 479, 853, 1047, 1392, 1395, 1544, 1654, 1685
FokI GGATG 3 cut(s) 736, 909, 1055
FriOI GRGCYC 1 cut(s) 867
Fsp4HI GCNGC 9 cut(s) 426, 479, 853, 1047, 1392, 1395, 1544, 1654, 1685
FspBI CTAG 4 cut(s) 339, 596, 692, 1635
GluI GCNGC 9 cut(s) 426, 479, 853, 1047, 1392, 1395, 1544, 1654, 1685
GsuI CTGGAG 1 cut(s) 951
HapII CCGG 4 cut(s) 153, 1013, 1266, 1364
HgaI GACGC 3 cut(s) 51, 1586, 1594
Hin1I GRCGYC 2 cut(s) 1173, 1586
Hin1II CATG 7 cut(s) 59, 409, 473, 977, 1538, 1712, 1724
HinfI GANTC 5 cut(s) 461, 784, 1106, 1210, 1668
HpaII CCGG 4 cut(s) 153, 1013, 1266, 1364
HphI GGTGA 1 cut(s) 1738
Hpy166II GTNNAC 4 cut(s) 390, 592, 1601, 1672
Hpy188I TCNGA 5 cut(s) 33, 240, 767, 1330, 1431
Hpy8I GTNNAC 4 cut(s) 390, 592, 1601, 1672
Hpy99I CGWCG 1 cut(s) 1588
HpyAV CCTTC 5 cut(s) 722, 786, 950, 1010, 1634
HpyCH4III ACNGT 2 cut(s) 1152, 1575
HpyCH4IV ACGT 2 cut(s) 1173, 1484
HpyCH4V TGCA 8 cut(s) 508, 684, 852, 993, 1056, 1076, 1478, 1656
HpyF10VI GCNNNNNNNGC 6 cut(s) 59, 275, 579, 1388, 1594, 1659
HpyF3I CTNAG 7 cut(s) 123, 203, 237, 1093, 1236, 1428, 1604
HpySE526I ACGT 2 cut(s) 1173, 1484
Hsp92I GRCGYC 2 cut(s) 1173, 1586
Hsp92II CATG 7 cut(s) 59, 409, 473, 977, 1538, 1712, 1724
KflI GGGWCCC 1 cut(s) 936
Kpn2I TCCGGA 1 cut(s) 1012
Ksp22I TGATCA 1 cut(s) 1116
Kzo9I GATC 6 cut(s) 3, 745, 871, 1116, 1325, 1441
Lsp1109I GCAGC 7 cut(s) 465, 864, 1378, 1381, 1530, 1640, 1671
LweI GCATC 4 cut(s) 864, 887, 1033, 1098
MabI ACCWGGT 1 cut(s) 1674
MaeI CTAG 4 cut(s) 339, 596, 692, 1635
MaeII ACGT 2 cut(s) 1173, 1484
MaeIII GTNAC 5 cut(s) 13, 41, 206, 1154, 1174
MalI GATC 6 cut(s) 5, 747, 873, 1118, 1327, 1443
MboI GATC 6 cut(s) 3, 745, 871, 1116, 1325, 1441
MflI RGATCY 2 cut(s) 745, 871
MhlI GDGCHC 1 cut(s) 867
MlyI GAGTC 2 cut(s) 1219, 1677
MroI TCCGGA 1 cut(s) 1012
MroXI GAANNNNTTC 2 cut(s) 907, 1191
MslI CAYNNNNRTG 1 cut(s) 978
MspA1I CMGCKG 1 cut(s) 261
MspI CCGG 4 cut(s) 153, 1013, 1266, 1364
MspR9I CCNGG 5 cut(s) 140, 153, 560, 1266, 1676
Mva1269I GAATGC 1 cut(s) 693
MvaI CCWGG 3 cut(s) 140, 560, 1676
MwoI GCNNNNNNNGC 6 cut(s) 59, 275, 579, 1388, 1594, 1659
NciI CCSGG 2 cut(s) 153, 1266
NdeI CATATG 1 cut(s) 1769
NdeII GATC 6 cut(s) 3, 745, 871, 1116, 1325, 1441
NlaIII CATG 7 cut(s) 59, 409, 473, 977, 1538, 1712, 1724
NlaIV GGNNCC 3 cut(s) 590, 937, 938
NmeAIII GCCGAG 1 cut(s) 560
NmuCI GTSAC 5 cut(s) 13, 41, 206, 1154, 1174
NspI RCATGY 1 cut(s) 977
PaeR7I CTCGAG 1 cut(s) 952
PagI TCATGA 2 cut(s) 55, 1720
PctI GAATGC 1 cut(s) 693
PdmI GAANNNNTTC 2 cut(s) 907, 1191
PfeI GAWTC 3 cut(s) 461, 784, 1106
PflMI CCANNNNNTGG 1 cut(s) 565
PfoI TCCNGGA 2 cut(s) 151, 1264
PkrI GCNGC 9 cut(s) 427, 480, 854, 1048, 1393, 1396, 1545, 1655, 1686
PleI GAGTC 2 cut(s) 1218, 1676
PpsI GAGTC 2 cut(s) 1218, 1676
PpuMI RGGWCCY 1 cut(s) 936
PshBI ATTAAT 2 cut(s) 669, 1473
Psp124BI GAGCTC 1 cut(s) 867
Psp1406I AACGTT 1 cut(s) 1484
Psp5II RGGWCCY 1 cut(s) 936
Psp6I CCWGG 3 cut(s) 138, 558, 1674
PspGI CCWGG 3 cut(s) 138, 558, 1674
PspN4I GGNNCC 3 cut(s) 590, 937, 938
PspPI GGNCC 2 cut(s) 589, 936
PspPPI RGGWCCY 1 cut(s) 936
PspXI VCTCGAGB 1 cut(s) 952
PstI CTGCAG 1 cut(s) 854
PstNI CAGNNNCTG 1 cut(s) 102
PsuI RGATCY 2 cut(s) 745, 871
RsaI GTAC 3 cut(s) 1572, 1609, 1742
RsaNI GTAC 3 cut(s) 1571, 1608, 1741
RseI CAYNNNNRTG 1 cut(s) 978
SacI GAGCTC 1 cut(s) 867
SatI GCNGC 9 cut(s) 426, 479, 853, 1047, 1392, 1395, 1544, 1654, 1685
Sau3AI GATC 6 cut(s) 3, 745, 871, 1116, 1325, 1441
Sau96I GGNCC 2 cut(s) 589, 936
ScaI AGTACT 2 cut(s) 1609, 1742
SchI GAGTC 2 cut(s) 1219, 1677
ScrFI CCNGG 5 cut(s) 140, 153, 560, 1266, 1676
SduI GDGCHC 1 cut(s) 867
SexAI ACCWGGT 1 cut(s) 1674
SfaNI GCATC 4 cut(s) 864, 887, 1033, 1098
SfcI CTRYAG 1 cut(s) 850
Sfr274I CTCGAG 1 cut(s) 952
SinI GGWCC 2 cut(s) 589, 936
SlaI CTCGAG 1 cut(s) 952
SmiMI CAYNNNNRTG 1 cut(s) 978
SmlI CTYRAG 4 cut(s) 251, 952, 1167, 1689
SmoI CTYRAG 4 cut(s) 251, 952, 1167, 1689
SsiI CCGC 3 cut(s) 261, 425, 1046
SspMI CTAG 4 cut(s) 339, 596, 692, 1635
SstI GAGCTC 1 cut(s) 867
StyD4I CCNGG 5 cut(s) 138, 151, 558, 1264, 1674
TaaI ACNGT 2 cut(s) 1152, 1575
TaiI ACGT 2 cut(s) 1176, 1487
TaqI TCGA 7 cut(s) 6, 434, 782, 787, 953, 1251, 1583
TatI WGTACW 3 cut(s) 1570, 1607, 1740
TauI GCSGC 2 cut(s) 428, 1049
TfiI GAWTC 3 cut(s) 461, 784, 1106
TscAI CASTG 1 cut(s) 763
TseFI GTSAC 5 cut(s) 13, 41, 206, 1154, 1174
TseI GCWGC 7 cut(s) 478, 852, 1391, 1394, 1543, 1653, 1684
Tsp45I GTSAC 5 cut(s) 13, 41, 206, 1154, 1174
TspGWI ACGGA 1 cut(s) 1427
TspRI CASTG 1 cut(s) 763
Van91I CCANNNNNTGG 1 cut(s) 565
VpaK11BI GGWCC 2 cut(s) 589, 936
VspI ATTAAT 2 cut(s) 669, 1473
XapI RAATTY 3 cut(s) 241, 1008, 1354
XceI RCATGY 1 cut(s) 977
XhoI CTCGAG 1 cut(s) 952
XmnI GAANNNNTTC 2 cut(s) 907, 1191
XspI CTAG 4 cut(s) 339, 596, 692, 1635
ZraI GACGTC 1 cut(s) 1174
ZrmI AGTACT 2 cut(s) 1609, 1742
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.