Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0008889

Physical Location & Seq

Genomic Coordinates Reverse (-)

16662857 .. 16666422

Gene Structure 3566 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG095400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGCGGCGCGTTGGCGGCGGCAAGCACTTAGGGTGAAAATGATTATTGGTTTTATTAAGACCAACAAATATGGGACGTCTCAAAGAAGTGAAGTTCCAAGGTGGTTTGGATACCGGGAGAATTTAAATGAGCTTGTTGTTAAATCTGAATTTTGTTTTGATGTTCCTGTAAATTTGAAATCTGGGAACAAAGGATTGGCTATTTGTGCTGCAGCTACTGCTACAAATAATTATGGGGAGTGCACTTTCTCGGCCAGTGTTTACATCAATAAAGAAAGAATGACTACACGTTCCTTCCATTTTGAAGCAAAGCAGATGGAGACGTCTGATCATGTGTGGATGCGCTACATTCCATTCGTTGAGTTTGGGTTTCATCAGCCGCCTTTTACCTGTCGTGTTATTTTGGAACATTCTAGCCAAGATGATTCGGTGCGCTGTACAAGCTATGGGGTCCACCTGGTAATGCCAATGGTGAACGATATGAAGATGGGGAACAATACGAAGATGATGATTGATGATAAATATGGTGAAAGCATTCCAGGTACGAGCAAAAGAAATAAGACTTCTCCAGACGAATATCTTGTCCACCGCCAAAGAAGCAATTCCTCATCCAAAACACTAGCTTTGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC TIR

Protein Analysis

210

Amino Acids

24.15

Weight (kDa)

9.4

Isoelectric Point (pI)

55.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008889)

Species	Orthologous Gene IDs
prunus_persica	Prupe.8G110000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0262301 RchiOBHm_Chr6g0262321
rosa_laevigata	RLG00000014024 RLG00000014034 RLG00000014334 RLG00000014342 RLG00000035301
rosa_multiflora	Rmu_sc0000565.1_g000041 Rmu_sc0002938.1_g000003 Rmu_sc0002938.1_g000011 Rmu_ssc0000388.1_g000023
rosa_roxburghii	Rroxscaffold_7G00201070 Rroxscaffold_7G00201110 Rroxscaffold_7G00204190 Rroxscaffold_7G00204430
rosa_rugosa	Rorug06G0029600 Rorug06G0029800
rosa_samantha	Rh1AG095400 Rh1AG095600 Rh6AG151300 Rh6DG136200
rosa_wichuraiana	Rw6G013100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	80, 326
AccII	CGCG	1 cut(s)	10
AciI	CCGC	5 cut(s)	5, 16, 19, 380, 589
AcoI	YGGCCR	1 cut(s)	252
AcsI	RAATTY	3 cut(s)	121, 149, 172
AcyI	GRCGYC	2 cut(s)	77, 323
AfaI	GTAC	2 cut(s)	439, 544
AflIII	ACRYGT	1 cut(s)	287
AgsI	TTSAA	3 cut(s)	178, 305, 628
AjnI	CCWGG	2 cut(s)	456, 538
AjuI	GAANNNNNNNTTGG	2 cut(s)	179, 211
AluBI	AGCT	4 cut(s)	133, 215, 444, 623
AluI	AGCT	4 cut(s)	133, 215, 444, 623
Alw21I	GWGCWC	1 cut(s)	245
Alw26I	GTCTC	2 cut(s)	84, 314
Alw44I	GTGCAC	1 cut(s)	241
AlwNI	CAGNNNCTG	1 cut(s)	218
AoxI	GGCC	1 cut(s)	252
ApaLI	GTGCAC	1 cut(s)	241
ApeKI	GCWGC	2 cut(s)	209, 212
ApoI	RAATTY	3 cut(s)	121, 149, 172
ArsI	GACNNNNNNTTYG	2 cut(s)	567, 599
Asp700I	GAANNNNTTC	2 cut(s)	534, 601
AspLEI	GCGC	3 cut(s)	10, 345, 435
AspS9I	GGNCC	1 cut(s)	451
AsuC2I	CCSGG	1 cut(s)	116
AsuHPI	GGTGA	3 cut(s)	46, 484, 539
AvaII	GGWCC	1 cut(s)	451
BaeGI	GKGCMC	1 cut(s)	245
Bbv12I	GWGCWC	1 cut(s)	245
BbvI	GCAGC	2 cut(s)	196, 224
BccI	CCATC	2 cut(s)	310, 481
BciT130I	CCWGG	2 cut(s)	458, 540
BciVI	GTATCC	1 cut(s)	104
BclI	TGATCA	1 cut(s)	328
BcnI	CCSGG	1 cut(s)	116
BcoDI	GTCTC	2 cut(s)	84, 314
BfaI	CTAG	2 cut(s)	414, 620
BfmI	CTRYAG	1 cut(s)	210
BfuI	GTATCC	1 cut(s)	104
BisI	GCNGC	6 cut(s)	6, 17, 20, 210, 213, 380
BlsI	GCNGC	6 cut(s)	7, 18, 21, 211, 214, 381
Bme1390I	CCNGG	3 cut(s)	116, 458, 540
Bme18I	GGWCC	1 cut(s)	451
BmgT120I	GGNCC	1 cut(s)	451
BmiI	GGNNCC	1 cut(s)	452
BmrFI	CCNGG	3 cut(s)	116, 458, 540
BmsI	GCATC	1 cut(s)	330
BpmI	CTGGAG	1 cut(s)	552
BpuMI	CCSGG	1 cut(s)	116
BsaHI	GRCGYC	2 cut(s)	77, 323
BsaJI	CCNNGG	1 cut(s)	98
Bse1I	ACTGG	1 cut(s)	255
BseBI	CCWGG	2 cut(s)	458, 540
BseDI	CCNNGG	1 cut(s)	98
BseGI	GGATG	2 cut(s)	345, 608
BseNI	ACTGG	1 cut(s)	255
BseSI	GKGCMC	1 cut(s)	245
BseXI	GCAGC	2 cut(s)	196, 224
Bsh1236I	CGCG	1 cut(s)	10
BshFI	GGCC	1 cut(s)	254
BsiHKAI	GWGCWC	1 cut(s)	245
BsiSI	CCGG	1 cut(s)	115
BslFI	GGGAC	1 cut(s)	88
BsmAI	GTCTC	2 cut(s)	84, 314
BsmBI	CGTCTC	2 cut(s)	84, 314
BsmFI	GGGAC	1 cut(s)	88
BsmI	GAATGC	1 cut(s)	534
BsnI	GGCC	1 cut(s)	254
Bsp1286I	GDGCHC	1 cut(s)	245
Bsp1407I	TGTACA	1 cut(s)	437
Bsp143I	GATC	1 cut(s)	328
BspACI	CCGC	5 cut(s)	5, 16, 19, 380, 589
BspANI	GGCC	1 cut(s)	254
BspFNI	CGCG	1 cut(s)	10
BspLI	GGNNCC	1 cut(s)	452
BspMAI	CTGCAG	1 cut(s)	214
BsrGI	TGTACA	1 cut(s)	437
BsrI	ACTGG	1 cut(s)	255
BssECI	CCNNGG	1 cut(s)	98
BssMI	GATC	1 cut(s)	328
BssNI	GRCGYC	2 cut(s)	77, 323
BssT1I	CCWWGG	1 cut(s)	98
Bst2UI	CCWGG	2 cut(s)	458, 540
BstACI	GRCGYC	2 cut(s)	77, 323
BstAPI	GCANNNNNTGC	1 cut(s)	218
BstAUI	TGTACA	1 cut(s)	437
BstC8I	GCNNGC	1 cut(s)	24
BstDEI	CTNAG	1 cut(s)	29
BstF5I	GGATG	2 cut(s)	345, 608
BstFNI	CGCG	1 cut(s)	10
BstHHI	GCGC	3 cut(s)	10, 345, 435
BstKTI	GATC	1 cut(s)	331
BstMAI	GTCTC	2 cut(s)	84, 314
BstMBI	GATC	1 cut(s)	328
BstMWI	GCNNNNNNNGC	5 cut(s)	16, 206, 218, 441, 597
BstNI	CCWGG	2 cut(s)	458, 540
BstSCI	CCNGG	3 cut(s)	114, 456, 538
BstSFI	CTRYAG	1 cut(s)	210
BstSLI	GKGCMC	1 cut(s)	245
BstUI	CGCG	1 cut(s)	10
BstV1I	GCAGC	2 cut(s)	196, 224
BsuI	GTATCC	1 cut(s)	104
BsuRI	GGCC	1 cut(s)	254
BtsCI	GGATG	2 cut(s)	345, 608
BtsIMutI	CAGTG	1 cut(s)	262
Cac8I	GCNNGC	1 cut(s)	24
CaiI	CAGNNNCTG	1 cut(s)	218
CfoI	GCGC	3 cut(s)	10, 345, 435
Cfr13I	GGNCC	1 cut(s)	451
CsiI	ACCWGGT	1 cut(s)	456
Csp6I	GTAC	2 cut(s)	438, 543
CviAII	CATG	1 cut(s)	332
CviJI	RGCY	8 cut(s)	133, 200, 215, 254, 379, 417, 444, 623
CviKI_1	RGCY	8 cut(s)	133, 200, 215, 254, 379, 417, 444, 623
CviQI	GTAC	2 cut(s)	438, 543
DdeI	CTNAG	1 cut(s)	29
DpnI	GATC	1 cut(s)	330
DpnII	GATC	1 cut(s)	328
DraI	TTTAAA	1 cut(s)	126
EaeI	YGGCCR	1 cut(s)	252
Eco130I	CCWWGG	1 cut(s)	98
Eco47I	GGWCC	1 cut(s)	451
EcoRII	CCWGG	2 cut(s)	456, 538
EcoT14I	CCWWGG	1 cut(s)	98
ErhI	CCWWGG	1 cut(s)	98
Esp3I	CGTCTC	2 cut(s)	84, 314
FaeI	CATG	1 cut(s)	335
FaiI	YATR	6 cut(s)	72, 234, 333, 447, 482, 525
FaqI	GGGAC	1 cut(s)	88
FatI	CATG	1 cut(s)	331
FbaI	TGATCA	1 cut(s)	328
Fnu4HI	GCNGC	6 cut(s)	6, 17, 20, 210, 213, 380
FokI	GGATG	2 cut(s)	352, 595
Fsp4HI	GCNGC	6 cut(s)	6, 17, 20, 210, 213, 380
FspBI	CTAG	2 cut(s)	414, 620
GlaI	GCGC	3 cut(s)	9, 344, 434
GluI	GCNGC	6 cut(s)	6, 17, 20, 210, 213, 380
GsuI	CTGGAG	1 cut(s)	552
HaeIII	GGCC	1 cut(s)	254
HapII	CCGG	1 cut(s)	115
HhaI	GCGC	3 cut(s)	10, 345, 435
Hin1I	GRCGYC	2 cut(s)	77, 323
Hin1II	CATG	1 cut(s)	335
Hin6I	GCGC	3 cut(s)	8, 343, 433
HinP1I	GCGC	3 cut(s)	8, 343, 433
HinfI	GANTC	1 cut(s)	425
HpaII	CCGG	1 cut(s)	115
HphI	GGTGA	3 cut(s)	46, 484, 539
Hpy166II	GTNNAC	5 cut(s)	243, 262, 454, 475, 586
Hpy188I	TCNGA	2 cut(s)	148, 328
Hpy188III	TCNNGA	1 cut(s)	569
Hpy8I	GTNNAC	5 cut(s)	243, 262, 454, 475, 586
HpyAV	CCTTC	1 cut(s)	304
HpyCH4IV	ACGT	3 cut(s)	77, 289, 323
HpyCH4V	TGCA	2 cut(s)	212, 243
HpyF10VI	GCNNNNNNNGC	5 cut(s)	16, 206, 218, 441, 597
HpyF3I	CTNAG	1 cut(s)	29
HpySE526I	ACGT	3 cut(s)	77, 289, 323
Hsp92I	GRCGYC	2 cut(s)	77, 323
Hsp92II	CATG	1 cut(s)	335
HspAI	GCGC	3 cut(s)	8, 343, 433
Ksp22I	TGATCA	1 cut(s)	328
Kzo9I	GATC	1 cut(s)	328
Lsp1109I	GCAGC	2 cut(s)	196, 224
LweI	GCATC	1 cut(s)	330
MabI	ACCWGGT	1 cut(s)	456
MaeI	CTAG	2 cut(s)	414, 620
MaeII	ACGT	3 cut(s)	77, 289, 323
MalI	GATC	1 cut(s)	330
MboI	GATC	1 cut(s)	328
MboII	GAAGA	2 cut(s)	496, 514
MhlI	GDGCHC	1 cut(s)	245
MluCI	AATT	6 cut(s)	121, 149, 172, 229, 601, 628
MnlI	CCTC	1 cut(s)	616
MroXI	GAANNNNTTC	2 cut(s)	534, 601
MseI	TTAA	3 cut(s)	57, 125, 141
MspI	CCGG	1 cut(s)	115
MspR9I	CCNGG	3 cut(s)	116, 458, 540
Mva1269I	GAATGC	1 cut(s)	534
MvaI	CCWGG	2 cut(s)	458, 540
MvnI	CGCG	1 cut(s)	10
MwoI	GCNNNNNNNGC	5 cut(s)	16, 206, 218, 441, 597
NciI	CCSGG	1 cut(s)	116
NdeII	GATC	1 cut(s)	328
NlaIII	CATG	1 cut(s)	335
NlaIV	GGNNCC	1 cut(s)	452
NmeAIII	GCCGAG	1 cut(s)	230
PctI	GAATGC	1 cut(s)	534
PdmI	GAANNNNTTC	2 cut(s)	534, 601
PfeI	GAWTC	1 cut(s)	425
PkrI	GCNGC	6 cut(s)	7, 18, 21, 211, 214, 381
Psp6I	CCWGG	2 cut(s)	456, 538
PspGI	CCWGG	2 cut(s)	456, 538
PspN4I	GGNNCC	1 cut(s)	452
PspPI	GGNCC	1 cut(s)	451
PstI	CTGCAG	1 cut(s)	214
PstNI	CAGNNNCTG	1 cut(s)	218
RsaI	GTAC	2 cut(s)	439, 544
RsaNI	GTAC	2 cut(s)	438, 543
SaqAI	TTAA	3 cut(s)	57, 125, 141
SatI	GCNGC	6 cut(s)	6, 17, 20, 210, 213, 380
Sau3AI	GATC	1 cut(s)	328
Sau96I	GGNCC	1 cut(s)	451
ScrFI	CCNGG	3 cut(s)	116, 458, 540
SduI	GDGCHC	1 cut(s)	245
SexAI	ACCWGGT	1 cut(s)	456
SfaNI	GCATC	1 cut(s)	330
SfcI	CTRYAG	1 cut(s)	210
SinI	GGWCC	1 cut(s)	451
SmiI	ATTTAAAT	1 cut(s)	126
Sse9I	AATT	6 cut(s)	121, 149, 172, 229, 601, 628
SsiI	CCGC	5 cut(s)	5, 16, 19, 380, 589
SspMI	CTAG	2 cut(s)	414, 620
StyD4I	CCNGG	3 cut(s)	114, 456, 538
StyI	CCWWGG	1 cut(s)	98
SwaI	ATTTAAAT	1 cut(s)	126
TaiI	ACGT	3 cut(s)	80, 292, 326
TasI	AATT	6 cut(s)	121, 149, 172, 229, 601, 628
TatI	WGTACW	1 cut(s)	437
TauI	GCSGC	4 cut(s)	8, 19, 22, 382
TfiI	GAWTC	1 cut(s)	425
Tru1I	TTAA	3 cut(s)	57, 125, 141
Tru9I	TTAA	3 cut(s)	57, 125, 141
TscAI	CASTG	1 cut(s)	262
TseI	GCWGC	2 cut(s)	209, 212
TspDTI	ATGAA	2 cut(s)	362, 497
TspRI	CASTG	1 cut(s)	262
VneI	GTGCAC	1 cut(s)	241
VpaK11BI	GGWCC	1 cut(s)	451
XapI	RAATTY	3 cut(s)	121, 149, 172
XmnI	GAANNNNTTC	2 cut(s)	534, 601
XspI	CTAG	2 cut(s)	414, 620
ZraI	GACGTC	2 cut(s)	78, 324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.