Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0008889

Physical Location & Seq

Genomic Coordinates Reverse (-)

45873130 .. 45887398

Gene Structure 14269 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014024

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2448 bp

ATGGTCACTCAATTTGGAACCCCTTCATCTTCTTCTTTCACCCTCGAACATGCTTGGACATATGATGTCTTTCTAAGTTTCAGCGGTCAGGATACACGCAGAAATTTTACAGACCATTTGTATAGCGCTTTGATTCAACAGGGGATTAAGACCTTCGCTGACGCTGATGATGAACTTCCAACAGCAGAATCAAGAATTTCTATCATCATATTATCTCACAATTATGCAACTTCAGGGTCGTGTCTGGAGCAGTTAGTGAAGATCCTCGGATGTAAAACCTCAAAGCAACAACAGGTTTGTCCCGTGTTCTACAAGGTTATACCCTCCGATGTAAGGAACCAGACAGGTGGTTTTGGTAAGGCATTTGCCATGCATGGAAGTAGGTTCAAGGATAAGATGGATGAATGGAGAGCAGCTCTCATGGAAGTAGCAGATTTGTCTGAGTGGCATTTTCCGGAGGACGGGTTTGAGTCAAAGTTTATTCATGGGATTGTTGAAGAGATTTCGAAACGAGTACTAAATCTTACATATTTGCATGTGGCGGATTATTCGGTAGGAATAGAGTCTCGTTTATGTGATATGGATAGGCTTGTAGGTGTTGGAGGGGATGATATTCGTATGGTCGGGATATGGGGGCCTGGTGGAATAGGTAAAACAACAATTGCCAAAGCTATTTATAATTCAATTATTCACAAGTTCGAATGTAGCTGTTTCCTGGAAAATATCAGAGAAAGATCAGCGCAATACGGAGGCCTTGTGAAACTACAAAGATTTTTTCTTTCCCACATCCTAATGGGAAAAGAAATAACATTAGCCACTTGCAATGAAGGAATGACAGTTATAAAGGAAAGATTAAGCCACAAAAGGGTTCTGTTAGTTCTTGATGATGCGAATGACTTGGAACAGTTAAGAATATTAGCTGGAGGATCTCAGTGGTTTGGTTTGGGAAGCAGGGTTATTATTACGACAAGAGATAAGCATTTATTAATTGCTCATCAGGTCAATCTAATATACAAGGTCAAAAAATTGGATCATCATGAAGCTTTTGCGCTCTTCACAATTGATGCAGTACAGTACGCCCAAGGCCTTCCATTAGCTCTTGTAGCTTTAGGCTCAGTTCTTTGTGGTAGATCTATAGAGGAGTGGAAAGAAGCGAGAGATGGTAATTGGCAGTTTGGAATCACAGGCCTGTATGACACTCTTAAAATAAGTATTGATGCATTGGAACATCAGGTTAGAGAAGTTTTCCTTGACATCGCATGTTTCTTTAGTGGTGAAAATAACAATCATGTGATACAGTTACTAAAAGCGGGTGGCATCAATCCTAACATCAGTCTTAGTATCCTCCAAGAAAAGGCGCTGATAAGTATTAATGAAGAAAACCATATTTGGATGCACAACTTGATGGAGGTAATGGGAAAAAGAATAGTTCACATTGAGTCCCCAAATGAACCCTGCAAACGCAGTAGATTGTGGTCTTCTGATGATGTTTACGACGTATTAACTAAAGGCAAAGGAACAAACAAAGTCGAAGGTATCATGGTAAAGTTGCCTGAACCAGATGAGATACACTCCAAAACTCTGAAATATATAAATCTGGACAGCTGCCCTTTCTTGACAGAAATCCGGAACTTGTCTGGATTTCCAAATTTAAGGCACTTGAATTTGAGCAACTGTACGGCTTTAGTTGAGCTTGATGATTCTATTGGATTCCTTAATAAGCTTAATGCTCGAGTCTTTCCCCACAAGGCCACAATTGTAAAAAGGATGGAGTGCTTGACAAGCTTAGATCTATCCGGAACTGCCATCAAAGAATTGTCTTCACAAGTTGCATCTCTGATTAGCCTTGAAGAGTTAACTATAACAGAATGTGACAACCTTACTACTCTTCCATGCAGCATATATGATTTGCAGCATTTGGGGTCTCTTGATCTCCAAGGCTGCTCAAAAGAGCTGAAGCCAAAGTGGTTCAACCATCGGAAGTATTTGAGTAATCCAGTCGATACATCTGAATTTTCTTTTGAAATACCTCTCAATTTCAAATTGGGGGACAAAGGATTGGCTATATGTGCAGTGGCTACTTCAGTAGATGATCTTGGTCATTGCGCTTTCACAGCCAGAATTAGCATTCACGAAGAAAGTAGTATTACACGTTCGTTTAGTTTTGAAGCAAAAGAAATGGTGTCAGCTCATGCGTGGCTGCTCTATATTCCATTGGTTAACTTTGCTCATCGGCAATCCTTGCCTTTTACCTGTCGAGTTACTTTGGAACATACTAGCCAAGGTTCAGCGCGCTGTAAAAGCTATGGGGTGCACCTAGTAATGCCCCAAGGTGAATATGATGACTATATGGAAGATGACTACTCCGTCTGCTCATCTAGTGAAGATGATGAGAGTAATATTTCAGATTGGAAAAAGAAAAAAGAGAAGATGAAGAAATGGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC TIR

Protein Analysis

816

Amino Acids

91.72

Weight (kDa)

6.03

Isoelectric Point (pI)

45.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	21 - 174	1.2e-38	TIR domain
NB-ARC	PF00931	202 - 356	5.2e-16	NB-ARC domain
WHD_ROQ1	PF23282	412 - 478	2.6e-16	Disease resistance protein Roq1-like, winged-helix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008889)

Species	Orthologous Gene IDs
prunus_persica	Prupe.8G110000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0262301 RchiOBHm_Chr6g0262321
rosa_laevigata	RLG00000014024 RLG00000014034 RLG00000014334 RLG00000014342 RLG00000035301
rosa_multiflora	Rmu_sc0000565.1_g000041 Rmu_sc0002938.1_g000003 Rmu_sc0002938.1_g000011 Rmu_ssc0000388.1_g000023
rosa_roxburghii	Rroxscaffold_7G00201070 Rroxscaffold_7G00201110 Rroxscaffold_7G00204190 Rroxscaffold_7G00204430
rosa_rugosa	Rorug06G0029600 Rorug06G0029800
rosa_samantha	Rh1AG095400 Rh1AG095600 Rh6AG151300 Rh6DG136200
rosa_wichuraiana	Rw6G013100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	678, 842
AasI	GACNNNNNNGTC	1 cut(s)	2366
AccII	CGCG	1 cut(s)	2293
AccIII	TCCGGA	3 cut(s)	454, 1626, 1796
AciI	CCGC	3 cut(s)	84, 542, 1310
AclWI	GGATC	3 cut(s)	256, 934, 1038
AcsI	RAATTY	5 cut(s)	103, 195, 1648, 1663, 2012
AcuI	CTGAAG	3 cut(s)	216, 1976, 2067
AfaI	GTAC	4 cut(s)	516, 1071, 1076, 1678
AfeI	AGCGCT	1 cut(s)	127
AfiI	CCNNNNNNNGG	4 cut(s)	333, 461, 865, 1354
AflIII	ACRYGT	1 cut(s)	2150
AjnI	CCWGG	2 cut(s)	637, 714
Alw21I	GWGCWC	1 cut(s)	2316
Alw26I	GTCTC	2 cut(s)	570, 1929
Alw44I	GTGCAC	1 cut(s)	2312
AlwI	GGATC	3 cut(s)	256, 934, 1038
Ama87I	CYCGRG	1 cut(s)	1731
Aor13HI	TCCGGA	3 cut(s)	454, 1626, 1796
Aor51HI	AGCGCT	1 cut(s)	127
AoxI	GGCC	5 cut(s)	635, 751, 1084, 1186, 1749
ApaLI	GTGCAC	1 cut(s)	2312
ApeKI	GCWGC	6 cut(s)	413, 1605, 1896, 1912, 1941, 2200
ApoI	RAATTY	5 cut(s)	103, 195, 1648, 1663, 2012
AseI	ATTAAT	2 cut(s)	986, 1371
Asp700I	GAANNNNTTC	1 cut(s)	22
AspLEI	GCGC	7 cut(s)	128, 742, 1051, 1360, 2108, 2293, 2295
AspS9I	GGNCC	1 cut(s)	635
AsuHPI	GGTGA	3 cut(s)	31, 1286, 2345
AsuII	TTCGAA	2 cut(s)	506, 699
AvaI	CYCGRG	1 cut(s)	1731
BaeGI	GKGCMC	1 cut(s)	2316
BbsI	GAAGAC	2 cut(s)	1470, 1812
Bbv12I	GWGCWC	1 cut(s)	2316
BbvI	GCAGC	6 cut(s)	425, 1592, 1908, 1924, 1928, 2187
BccI	CCATC	6 cut(s)	391, 1154, 1399, 1762, 1814, 1983
BceAI	ACGGC	1 cut(s)	1695
BciT130I	CCWGG	2 cut(s)	639, 716
BciVI	GTATCC	2 cut(s)	85, 1352
BcoDI	GTCTC	2 cut(s)	570, 1929
BfaI	CTAG	3 cut(s)	2277, 2318, 2379
BfmI	CTRYAG	1 cut(s)	1134
BfoI	RGCGCY	2 cut(s)	129, 1361
BfuI	GTATCC	2 cut(s)	85, 1352
BglII	AGATCT	2 cut(s)	1130, 1789
BisI	GCNGC	6 cut(s)	414, 1606, 1897, 1913, 1942, 2201
BlsI	GCNGC	6 cut(s)	415, 1607, 1898, 1914, 1943, 2202
BmcAI	AGTACT	1 cut(s)	516
Bme1390I	CCNGG	2 cut(s)	639, 716
BmeT110I	CYCGRG	1 cut(s)	1731
BmgT120I	GGNCC	1 cut(s)	635
BmiI	GGNNCC	3 cut(s)	19, 338, 636
BmrFI	CCNGG	2 cut(s)	639, 716
BmsI	GCATC	6 cut(s)	877, 1054, 1207, 1326, 1383, 1841
BpiI	GAAGAC	2 cut(s)	1470, 1812
BplI	GAGNNNNNCTC	6 cut(s)	400, 432, 402, 434, 1556, 1588
BpmI	CTGGAG	2 cut(s)	266, 942
Bpu14I	TTCGAA	2 cut(s)	506, 699
BsaI	GGTCTC	1 cut(s)	1929
BsaJI	CCNNGG	5 cut(s)	265, 1081, 1936, 2281, 2329
BsaWI	WCCGGW	3 cut(s)	454, 1626, 1796
BsaXI	ACNNNNNCTCC	4 cut(s)	449, 479, 741, 771
Bsc4I	CCNNNNNNNGG	4 cut(s)	333, 461, 865, 1354
Bse1I	ACTGG	1 cut(s)	1997
Bse3DI	GCAATG	2 cut(s)	829, 2101
BseAI	TCCGGA	3 cut(s)	454, 1626, 1796
BseBI	CCWGG	2 cut(s)	639, 716
BseDI	CCNNGG	5 cut(s)	265, 1081, 1936, 2281, 2329
BseGI	GGATG	6 cut(s)	275, 406, 613, 786, 1398, 1773
BseLI	CCNNNNNNNGG	4 cut(s)	333, 461, 865, 1354
BseMI	GCAATG	2 cut(s)	829, 2101
BseMII	CTCAG	3 cut(s)	432, 944, 1128
BseNI	ACTGG	1 cut(s)	1997
BsePI	GCGCGC	1 cut(s)	2291
BseRI	GAGGAG	1 cut(s)	1154
BseSI	GKGCMC	1 cut(s)	2316
BseXI	GCAGC	6 cut(s)	425, 1592, 1908, 1924, 1928, 2187
BsgI	GTGCAG	1 cut(s)	2091
Bsh1236I	CGCG	1 cut(s)	2293
BshFI	GGCC	5 cut(s)	637, 753, 1086, 1188, 1751
BsiHKAI	GWGCWC	1 cut(s)	2316
BsiHKCI	CYCGRG	1 cut(s)	1731
BsiSI	CCGG	3 cut(s)	455, 1627, 1797
BslFI	GGGAC	3 cut(s)	285, 1426, 2063
BslI	CCNNNNNNNGG	4 cut(s)	333, 461, 865, 1354
BsmAI	GTCTC	2 cut(s)	570, 1929
BsmFI	GGGAC	3 cut(s)	285, 1426, 2063
BsmI	GAATGC	1 cut(s)	2127
BsnI	GGCC	5 cut(s)	637, 753, 1086, 1188, 1751
Bso31I	GGTCTC	1 cut(s)	1929
BsoBI	CYCGRG	1 cut(s)	1731
Bsp119I	TTCGAA	2 cut(s)	506, 699
Bsp1286I	GDGCHC	1 cut(s)	2316
Bsp13I	TCCGGA	3 cut(s)	454, 1626, 1796
Bsp143I	GATC	8 cut(s)	261, 734, 926, 1030, 1130, 1789, 1930, 2092
BspACI	CCGC	3 cut(s)	84, 542, 1310
BspANI	GGCC	5 cut(s)	637, 753, 1086, 1188, 1751
BspCNI	CTCAG	3 cut(s)	433, 943, 1127
BspEI	TCCGGA	3 cut(s)	454, 1626, 1796
BspFNI	CGCG	1 cut(s)	2293
BspHI	TCATGA	1 cut(s)	1036
BspLI	GGNNCC	3 cut(s)	19, 338, 636
BspPI	GGATC	3 cut(s)	256, 934, 1038
BspQI	GCTCTTC	1 cut(s)	1058
BspT104I	TTCGAA	2 cut(s)	506, 699
BspTNI	GGTCTC	1 cut(s)	1929
BsrDI	GCAATG	2 cut(s)	829, 2101
BsrI	ACTGG	1 cut(s)	1997
BssECI	CCNNGG	5 cut(s)	265, 1081, 1936, 2281, 2329
BssHII	GCGCGC	1 cut(s)	2291
BssMI	GATC	8 cut(s)	261, 734, 926, 1030, 1130, 1789, 1930, 2092
BssT1I	CCWWGG	4 cut(s)	1081, 1936, 2281, 2329
Bst2UI	CCWGG	2 cut(s)	639, 716
Bst4CI	ACNGT	5 cut(s)	838, 906, 1074, 1299, 1676
Bst6I	CTCTTC	4 cut(s)	492, 1058, 1845, 1893
BstAPI	GCANNNNNTGC	1 cut(s)	2242
BstBI	TTCGAA	2 cut(s)	506, 699
BstC8I	GCNNGC	1 cut(s)	2293
BstDEI	CTNAG	6 cut(s)	74, 441, 930, 1114, 1337, 1786
BstF5I	GGATG	6 cut(s)	275, 406, 613, 786, 1398, 1773
BstFNI	CGCG	1 cut(s)	2293
BstH2I	RGCGCY	2 cut(s)	129, 1361
BstHHI	GCGC	7 cut(s)	128, 742, 1051, 1360, 2108, 2293, 2295
BstKTI	GATC	8 cut(s)	264, 737, 929, 1033, 1133, 1792, 1933, 2095
BstMAI	GTCTC	2 cut(s)	570, 1929
BstMBI	GATC	8 cut(s)	261, 734, 926, 1030, 1130, 1789, 1930, 2092
BstMWI	GCNNNNNNNGC	6 cut(s)	1103, 1782, 2069, 2114, 2242, 2301
BstNI	CCWGG	2 cut(s)	639, 716
BstNSI	RCATGY	3 cut(s)	53, 539, 1263
BstSCI	CCNGG	2 cut(s)	637, 714
BstSFI	CTRYAG	1 cut(s)	1134
BstSLI	GKGCMC	1 cut(s)	2316
BstUI	CGCG	1 cut(s)	2293
BstV1I	GCAGC	6 cut(s)	425, 1592, 1908, 1924, 1928, 2187
BstV2I	GAAGAC	2 cut(s)	1470, 1812
BstX2I	RGATCY	4 cut(s)	261, 926, 1130, 1789
BstXI	CCANNNNNNTGG	1 cut(s)	347
BstYI	RGATCY	4 cut(s)	261, 926, 1130, 1789
BsuI	GTATCC	2 cut(s)	85, 1352
BsuRI	GGCC	5 cut(s)	637, 753, 1086, 1188, 1751
BtgZI	GCGATG	1 cut(s)	1240
BtsCI	GGATG	6 cut(s)	275, 406, 613, 786, 1398, 1773
BtsI	GCAGTG	1 cut(s)	2079
BtsIMutI	CAGTG	2 cut(s)	938, 2079
Cac8I	GCNNGC	1 cut(s)	2293
CciI	TCATGA	1 cut(s)	1036
CfoI	GCGC	7 cut(s)	128, 742, 1051, 1360, 2108, 2293, 2295
Cfr13I	GGNCC	1 cut(s)	635
CseI	GACGC	1 cut(s)	170
Csp6I	GTAC	4 cut(s)	515, 1070, 1075, 1677
CviQI	GTAC	4 cut(s)	515, 1070, 1075, 1677
DdeI	CTNAG	6 cut(s)	74, 441, 930, 1114, 1337, 1786
DpnI	GATC	8 cut(s)	263, 736, 928, 1032, 1132, 1791, 1932, 2094
DpnII	GATC	8 cut(s)	261, 734, 926, 1030, 1130, 1789, 1930, 2092
DrdI	GACNNNNNNGTC	1 cut(s)	2366
DseDI	GACNNNNNNGTC	1 cut(s)	2366
Eam1104I	CTCTTC	4 cut(s)	492, 1058, 1845, 1893
EarI	CTCTTC	4 cut(s)	492, 1058, 1845, 1893
EciI	GGCGGA	1 cut(s)	557
Eco130I	CCWWGG	4 cut(s)	1081, 1936, 2281, 2329
Eco147I	AGGCCT	3 cut(s)	753, 1086, 1188
Eco31I	GGTCTC	1 cut(s)	1929
Eco47III	AGCGCT	1 cut(s)	127
Eco57I	CTGAAG	3 cut(s)	216, 1976, 2067
Eco88I	CYCGRG	1 cut(s)	1731
EcoO109I	RGGNCCY	1 cut(s)	635
EcoRII	CCWGG	2 cut(s)	637, 714
EcoT14I	CCWWGG	4 cut(s)	1081, 1936, 2281, 2329
EcoT22I	ATGCAT	2 cut(s)	375, 1222
ErhI	CCWWGG	4 cut(s)	1081, 1936, 2281, 2329
FalI	AAGNNNNNCTT	2 cut(s)	1233, 1265
FaqI	GGGAC	3 cut(s)	285, 1426, 2063
FauI	CCCGC	1 cut(s)	1303
FauNDI	CATATG	1 cut(s)	61
Fnu4HI	GCNGC	6 cut(s)	414, 1606, 1897, 1913, 1942, 2201
FokI	GGATG	6 cut(s)	282, 413, 620, 773, 1405, 1780
Fsp4HI	GCNGC	6 cut(s)	414, 1606, 1897, 1913, 1942, 2201
FspBI	CTAG	3 cut(s)	2277, 2318, 2379
GlaI	GCGC	7 cut(s)	127, 741, 1050, 1359, 2107, 2292, 2294
GluI	GCNGC	6 cut(s)	414, 1606, 1897, 1913, 1942, 2201
GsuI	CTGGAG	2 cut(s)	266, 942
HaeII	RGCGCY	2 cut(s)	129, 1361
HaeIII	GGCC	5 cut(s)	637, 753, 1086, 1188, 1751
HapII	CCGG	3 cut(s)	455, 1627, 1797
HgaI	GACGC	1 cut(s)	170
HhaI	GCGC	7 cut(s)	128, 742, 1051, 1360, 2108, 2293, 2295
Hin6I	GCGC	7 cut(s)	126, 740, 1049, 1358, 2106, 2291, 2293
HinP1I	GCGC	7 cut(s)	126, 740, 1049, 1358, 2106, 2291, 2293
HincII	GTYRAC	2 cut(s)	1857, 2221
HindII	GTYRAC	2 cut(s)	1857, 2221
HindIII	AAGCTT	3 cut(s)	1041, 1721, 1783
HinfI	GANTC	9 cut(s)	133, 188, 470, 563, 1179, 1439, 1700, 1710, 1734
HpaI	GTTAAC	2 cut(s)	1857, 2221
HpaII	CCGG	3 cut(s)	455, 1627, 1797
HphI	GGTGA	3 cut(s)	31, 1286, 2345
Hpy166II	GTNNAC	5 cut(s)	1432, 1492, 1857, 2221, 2314
Hpy8I	GTNNAC	5 cut(s)	1432, 1492, 1857, 2221, 2314
Hpy99I	CGWCG	1 cut(s)	1499
HpyAV	CCTTC	5 cut(s)	33, 163, 821, 1097, 1526
HpyCH4III	ACNGT	5 cut(s)	838, 906, 1074, 1299, 1676
HpyCH4IV	ACGT	2 cut(s)	1497, 2152
HpyF10VI	GCNNNNNNNGC	6 cut(s)	1103, 1782, 2069, 2114, 2242, 2301
HpyF3I	CTNAG	6 cut(s)	74, 441, 930, 1114, 1337, 1786
HpySE526I	ACGT	2 cut(s)	1497, 2152
HspAI	GCGC	7 cut(s)	126, 740, 1049, 1358, 2106, 2291, 2293
Kpn2I	TCCGGA	3 cut(s)	454, 1626, 1796
KspAI	GTTAAC	2 cut(s)	1857, 2221
Kzo9I	GATC	8 cut(s)	261, 734, 926, 1030, 1130, 1789, 1930, 2092
LguI	GCTCTTC	1 cut(s)	1058
LmnI	GCTCC	1 cut(s)	247
Lsp1109I	GCAGC	6 cut(s)	425, 1592, 1908, 1924, 1928, 2187
LweI	GCATC	6 cut(s)	877, 1054, 1207, 1326, 1383, 1841
MaeI	CTAG	3 cut(s)	2277, 2318, 2379
MaeII	ACGT	2 cut(s)	1497, 2152
MaeIII	GTNAC	4 cut(s)	4, 1299, 1871, 2260
MalI	GATC	8 cut(s)	263, 736, 928, 1032, 1132, 1791, 1932, 2094
MboI	GATC	8 cut(s)	261, 734, 926, 1030, 1130, 1789, 1930, 2092
MfeI	CAATTG	3 cut(s)	660, 1059, 1755
MflI	RGATCY	4 cut(s)	261, 926, 1130, 1789
MhlI	GDGCHC	1 cut(s)	2316
MlyI	GAGTC	4 cut(s)	479, 572, 1448, 1743
MmeI	TCCRAC	2 cut(s)	203, 580
Mph1103I	ATGCAT	2 cut(s)	375, 1222
MroI	TCCGGA	3 cut(s)	454, 1626, 1796
MroXI	GAANNNNTTC	1 cut(s)	22
MslI	CAYNNNNRTG	2 cut(s)	222, 791
MspA1I	CMGCKG	2 cut(s)	84, 1605
MspI	CCGG	3 cut(s)	455, 1627, 1797
MspR9I	CCNGG	2 cut(s)	639, 716
MunI	CAATTG	3 cut(s)	660, 1059, 1755
Mva1269I	GAATGC	1 cut(s)	2127
MvaI	CCWGG	2 cut(s)	639, 716
MvnI	CGCG	1 cut(s)	2293
MwoI	GCNNNNNNNGC	6 cut(s)	1103, 1782, 2069, 2114, 2242, 2301
NdeI	CATATG	1 cut(s)	61
NdeII	GATC	8 cut(s)	261, 734, 926, 1030, 1130, 1789, 1930, 2092
NlaIV	GGNNCC	3 cut(s)	19, 338, 636
NmuCI	GTSAC	2 cut(s)	4, 1871
NsiI	ATGCAT	2 cut(s)	375, 1222
NspI	RCATGY	3 cut(s)	53, 539, 1263
NspV	TTCGAA	2 cut(s)	506, 699
PaeR7I	CTCGAG	1 cut(s)	1731
PagI	TCATGA	1 cut(s)	1036
PauI	GCGCGC	1 cut(s)	2291
PceI	AGGCCT	3 cut(s)	753, 1086, 1188
PciSI	GCTCTTC	1 cut(s)	1058
PctI	GAATGC	1 cut(s)	2127
PdmI	GAANNNNTTC	1 cut(s)	22
PfeI	GAWTC	5 cut(s)	133, 188, 1179, 1700, 1710
PfoI	TCCNGGA	1 cut(s)	714
PkrI	GCNGC	6 cut(s)	415, 1607, 1898, 1914, 1943, 2202
PleI	GAGTC	4 cut(s)	478, 571, 1447, 1742
PpsI	GAGTC	4 cut(s)	478, 571, 1447, 1742
PshBI	ATTAAT	2 cut(s)	986, 1371
PsiI	TTATAA	2 cut(s)	678, 842
Psp6I	CCWGG	2 cut(s)	637, 714
PspGI	CCWGG	2 cut(s)	637, 714
PspN4I	GGNNCC	3 cut(s)	19, 338, 636
PspPI	GGNCC	1 cut(s)	635
PspXI	VCTCGAGB	1 cut(s)	1731
PsrI	GAACNNNNNNTAC	2 cut(s)	2137, 2169
PsuI	RGATCY	4 cut(s)	261, 926, 1130, 1789
PteI	GCGCGC	1 cut(s)	2291
PvuII	CAGCTG	1 cut(s)	1605
RsaI	GTAC	4 cut(s)	516, 1071, 1076, 1678
RsaNI	GTAC	4 cut(s)	515, 1070, 1075, 1677
RseI	CAYNNNNRTG	2 cut(s)	222, 791
SapI	GCTCTTC	1 cut(s)	1058
SatI	GCNGC	6 cut(s)	414, 1606, 1897, 1913, 1942, 2201
Sau3AI	GATC	8 cut(s)	261, 734, 926, 1030, 1130, 1789, 1930, 2092
Sau96I	GGNCC	1 cut(s)	635
ScaI	AGTACT	1 cut(s)	516
SchI	GAGTC	4 cut(s)	479, 572, 1448, 1743
ScrFI	CCNGG	2 cut(s)	639, 716
SduI	GDGCHC	1 cut(s)	2316
SfaNI	GCATC	6 cut(s)	877, 1054, 1207, 1326, 1383, 1841
SfcI	CTRYAG	1 cut(s)	1134
Sfr274I	CTCGAG	1 cut(s)	1731
SfuI	TTCGAA	2 cut(s)	506, 699
SlaI	CTCGAG	1 cut(s)	1731
SmiMI	CAYNNNNRTG	2 cut(s)	222, 791
SmlI	CTYRAG	1 cut(s)	1731
SmoI	CTYRAG	1 cut(s)	1731
SseBI	AGGCCT	3 cut(s)	753, 1086, 1188
SsiI	CCGC	3 cut(s)	84, 542, 1310
SspI	AATATT	2 cut(s)	915, 2401
SspMI	CTAG	3 cut(s)	2277, 2318, 2379
StuI	AGGCCT	3 cut(s)	753, 1086, 1188
StyD4I	CCNGG	2 cut(s)	637, 714
StyI	CCWWGG	4 cut(s)	1081, 1936, 2281, 2329
TaaI	ACNGT	5 cut(s)	838, 906, 1074, 1299, 1676
TaiI	ACGT	2 cut(s)	1500, 2155
TaqI	TCGA	7 cut(s)	45, 506, 699, 1530, 1732, 2001, 2257
TatI	WGTACW	2 cut(s)	514, 1069
TfiI	GAWTC	5 cut(s)	133, 188, 1179, 1700, 1710
TscAI	CASTG	2 cut(s)	938, 2079
TseFI	GTSAC	2 cut(s)	4, 1871
TseI	GCWGC	6 cut(s)	413, 1605, 1896, 1912, 1941, 2200
Tsp45I	GTSAC	2 cut(s)	4, 1871
TspDTI	ATGAA	9 cut(s)	15, 186, 417, 473, 840, 1053, 1389, 1464, 2447
TspGWI	ACGGA	2 cut(s)	762, 2356
TspRI	CASTG	2 cut(s)	938, 2079
VneI	GTGCAC	1 cut(s)	2312
VspI	ATTAAT	2 cut(s)	986, 1371
XapI	RAATTY	5 cut(s)	103, 195, 1648, 1663, 2012
XceI	RCATGY	3 cut(s)	53, 539, 1263
XhoI	CTCGAG	1 cut(s)	1731
XmnI	GAANNNNTTC	1 cut(s)	22
XspI	CTAG	3 cut(s)	2277, 2318, 2379
ZrmI	AGTACT	1 cut(s)	516
Zsp2I	ATGCAT	2 cut(s)	375, 1222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.