Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0008889

Physical Location & Seq

Genomic Coordinates Reverse (-)

53607940 .. 53614807

Gene Structure 6868 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00204430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2454 bp

ATGGGGATATGGGGGATTGCTGGAATAGGTAAGACAACAATTGCCAAGGCTGTTTATAAGTCCCTCGCCTGTAAGTTTGATGGATGCTGTTTTCTAGAAAATGTTGGAAAAGTATCAATGCAACTTGGTGGTCCAGTCAAACTACGAAATATGCTTCTGTCGAAGATCCTAAGGGTGAAAGAATCCGATCTGCTGACTGATTCCTGTGAAGGAATGAATGTGATAGAGAACAGGTTAAGCAGAAAAAGAGTTCTATTAATTCTGGATGCTGTGGATCAATTGGAACAGTTGAGGTATTTAGCTGGAAAGTCTGAGTGGTTTGGTTTGGGCAGTAGAATTATCATAACAACAAGAGATAAACGCATGTTAGCTGCTCATGGTGTCAGAGAGAACCAAATATACAAGCCGAAGGAGTTAGATGAACATGAAGCTTTAGAGCTCTTCCGGGCAAATGCCTTTCCACAAGAAAGCCTCCCGGATGGTTATGCACAACTCGCAAAGGATGTATTAGAATATGCTCAAGGTCTTCCGTTAGCTTTGCAACAATTGGGTAAGTTATTATATGGTAGAACTGTAGAGGAATGGAAGGAGGAATTACATAGTCATAGGAAATCTCTTCAGGCTGGTCTTCATGAGAATCTCATAATAAGTTATAATGACTTGGAGCCTTCGGTGCAGCAAGTTTTCCTTGACATTGCATGTTTCTTTAAAGGTAAACATAAGAATCATGTGATACAAATACTAGAAAAAGGTGTCGTAAAGCCTATGAATAGTATCAAAATTCTCCAAGAAAAGGCCCTCATACATATTCAAGAAGATCATATTTGTATGCACAACCTGCTAGAGGTACTGGGTAAGGAAATAGTTCACGCTGAATCATCAGAGCCTGGAAAACGCAGCAGATTATGGTTTTCGGACGATGTTTACAAGATTCTATCAGAAGGCAAAGGAACAAAAAACATCAGAGGTGTCATAGTGTTTCCCAGTCCACATGAGGTACCATTGAGTGATACATCCTTCTCAGGCATGACAAATCTCAAATATTTTATCAACAGTGATGCTGAGTTTTCTGGAGACATTGCTTGTCTCCCAAACGAGTTGAGGCTTATTGATTGGCCAAGATTTCCGTTTAAATGTTTGCCACTCAATTATGTTCCCAAGAAGCTAGTTAAGCTCAATATGCCTTACAGCCTCATTTCACAACTAGGGGAGAAATTCAAGAGATCAAGCAATTTGAAATATATAAATCTGGAGAACTGCCAATCCCTTGAAGAAATCCCCAACTTCTCTGGATTCCCAAATTTAAGGGACTTGAATCTGAACTACTGTACAAGTTTAGTTAAGGTTGATGATTCTGTTGGAGCCCTACAAAACCTTGTTGCTTTGAGTCTTTCTGGATGCCACAACCTTGTTACCTTTCCAACAAGAATTGCCTTGAAATCTGTGAAACATATAATTTTCAGAGACTGCAGAAGTGTCAGGGCTTTGCCTGTAATTGTTCAAAAGATGGAATTCATAACATGGTTGGACCTATCTGGTACTGGTATCGAAGAGTTGCCTGATGCATCAATTAGGTACCTCATAAGCCTTGAGGAGTTAAGTCTAAGGGAATGTGAAAACTTAACAAGTCTGCCATGTAGCATTTATGAGTTGCAACATCTGCGGTACCTTGATCTCCACAATTGCTCAAAACTTGTGGCTCTCCCAGAGTGGAATGCAGAAATGCTTCAGACTGACTTGAATTCTTCACATAAGTTGCGGGATCTTAACCTAGGTGGTTGCAAGCAACTTCTAAAAATTCCTAAACTTCCACCAAATGTGGAATGGGTAAATGCAGCTGATTGCGTTCAATTGAAAAGATTTTCAAAACTGTCAAACATCATGGAACATAAAGAGTCACAAATGATCAAACGTATCACATTATCTAACTGTCAGACACTGTGTGACAATCTGGTTCGTGACATGGCAGAGACTGAAAATATTCTACCAAGTCAGGCTAGTCTATGCTCGCTCTTCCTCTCTTGTAGGCAGTCTGAATTTGAAGTTGTATTTCCTGGAAGTGAAGTTCCAAAGTGGTTCAGTCATGGCAAGAAGTTGAAGGAGCTGACTGAAGAATCAAAATTTTCTTTTGAAATACCTCCAAATTTCAGATTGCGGAACCAAGGATTGGCTTTCTGTGCTGCAGCTGATGTGGTTGAGATAATTAACCCAGAAGCACAAAATAATTGCTCTGTCACAGCCACAATTGACATCAATGCAGGAAGCAAAATAGCACGTTCGTTTCATTTTAAAGGGAAAGTCATGGAATCAGGTCATGTGTGGCTGTGCTACATTCCATTCATTATTTTTACATGTTTCCTATCACCTCCTTTTACTTGTGGAGTTACTTTGGAACATAAAAGCCAAGGTTCCGTGCACTGCATAAGTTATGGGGTACACCTGGTAATGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC TIR

Protein Analysis

817

Amino Acids

92.31

Weight (kDa)

7.7

Isoelectric Point (pI)

45.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NB-ARC	PF00931	1 - 156	2.9e-15	NB-ARC domain
WHD_ROQ1	PF23282	226 - 293	7.3e-13	Disease resistance protein Roq1-like, winged-helix domain
LRR_14	PF23598	423 - 683	2.5e-09	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008889)

Species	Orthologous Gene IDs
prunus_persica	Prupe.8G110000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0262301 RchiOBHm_Chr6g0262321
rosa_laevigata	RLG00000014024 RLG00000014034 RLG00000014334 RLG00000014342 RLG00000035301
rosa_multiflora	Rmu_sc0000565.1_g000041 Rmu_sc0002938.1_g000003 Rmu_sc0002938.1_g000011 Rmu_ssc0000388.1_g000023
rosa_roxburghii	Rroxscaffold_7G00201070 Rroxscaffold_7G00201110 Rroxscaffold_7G00204190 Rroxscaffold_7G00204430
rosa_rugosa	Rorug06G0029600 Rorug06G0029800
rosa_samantha	Rh1AG095400 Rh1AG095600 Rh6AG151300 Rh6DG136200
rosa_wichuraiana	Rw6G013100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	57, 654
Acc36I	ACCTGC	1 cut(s)	846
Acc65I	GGTACC	3 cut(s)	997, 1575, 1665
AccB1I	GGYRCC	3 cut(s)	997, 1575, 1665
AccB7I	CCANNNNNTGG	1 cut(s)	2167
AciI	CCGC	3 cut(s)	1663, 1759, 2155
AclWI	GGATC	3 cut(s)	160, 282, 1770
AcoI	YGGCCR	1 cut(s)	1115
AcsI	RAATTY	9 cut(s)	780, 1214, 1300, 1511, 1741, 1797, 2036, 2120, 2143
AcuI	CTGAAG	3 cut(s)	602, 1712, 2130
AdeI	CACNNNGTG	1 cut(s)	1943
AfaI	GTAC	7 cut(s)	849, 999, 1330, 1540, 1577, 1667, 2436
AfiI	CCNNNNNNNGG	3 cut(s)	793, 844, 2167
AflIII	ACRYGT	1 cut(s)	2351
AjnI	CCWGG	3 cut(s)	886, 2053, 2439
AjuI	GAANNNNNNNTTGG	2 cut(s)	2150, 2182
AloI	GAACNNNNNNTCC	4 cut(s)	1247, 1279, 2049, 2081
Alw21I	GWGCWC	2 cut(s)	441, 2418
Alw26I	GTCTC	4 cut(s)	1068, 1091, 1458, 1964
Alw44I	GTGCAC	1 cut(s)	2414
AlwI	GGATC	3 cut(s)	160, 282, 1770
AlwNI	CAGNNNCTG	4 cut(s)	887, 1467, 1939, 1973
AoxI	GGCC	2 cut(s)	795, 1115
ApaLI	GTGCAC	1 cut(s)	2414
ApeKI	GCWGC	6 cut(s)	371, 676, 897, 1835, 2180, 2183
ApoI	RAATTY	9 cut(s)	780, 1214, 1300, 1511, 1741, 1797, 2036, 2120, 2143
AseI	ATTAAT	1 cut(s)	257
Asp700I	GAANNNNTTC	3 cut(s)	864, 1725, 1980
Asp718I	GGTACC	3 cut(s)	997, 1575, 1665
AspA2I	CCTAGG	1 cut(s)	1771
AspS9I	GGNCC	3 cut(s)	131, 796, 1528
AsuC2I	CCSGG	2 cut(s)	446, 476
AsuHPI	GGTGA	2 cut(s)	187, 2355
AvaII	GGWCC	2 cut(s)	131, 1528
AvrII	CCTAGG	1 cut(s)	1771
AxyI	CCTNAGG	1 cut(s)	170
BaeGI	GKGCMC	1 cut(s)	2418
BalI	TGGCCA	1 cut(s)	1117
BanI	GGYRCC	3 cut(s)	997, 1575, 1665
BanII	GRGCYC	2 cut(s)	441, 1366
BbsI	GAAGAC	2 cut(s)	518, 620
Bbv12I	GWGCWC	2 cut(s)	441, 2418
BbvI	GCAGC	6 cut(s)	358, 688, 909, 1847, 2167, 2195
BccI	CCATC	3 cut(s)	74, 473, 1501
BciT130I	CCWGG	3 cut(s)	888, 2055, 2441
BclI	TGATCA	1 cut(s)	1905
BcnI	CCSGG	2 cut(s)	446, 476
BcoDI	GTCTC	4 cut(s)	1068, 1091, 1458, 1964
BfaI	CTAG	7 cut(s)	95, 743, 842, 1166, 1205, 1772, 1998
BfmI	CTRYAG	3 cut(s)	573, 1468, 2181
BfuAI	ACCTGC	1 cut(s)	846
BisI	GCNGC	6 cut(s)	372, 677, 898, 1836, 2181, 2184
BlnI	CCTAGG	1 cut(s)	1771
BlsI	GCNGC	6 cut(s)	373, 678, 899, 1837, 2182, 2185
Bme1390I	CCNGG	5 cut(s)	446, 476, 888, 2055, 2441
Bme18I	GGWCC	2 cut(s)	131, 1528
BmgT120I	GGNCC	3 cut(s)	131, 796, 1528
BmiI	GGNNCC	7 cut(s)	666, 999, 1363, 1577, 1667, 2159, 2410
BmrFI	CCNGG	5 cut(s)	446, 476, 888, 2055, 2441
BmrI	ACTGGG	2 cut(s)	860, 978
BmsI	GCATC	6 cut(s)	74, 256, 1048, 1388, 1552, 1574
BmuI	ACTGGG	2 cut(s)	860, 978
BpiI	GAAGAC	2 cut(s)	518, 620
BpmI	CTGGAG	2 cut(s)	1092, 1271
BpuEI	CTTGAG	2 cut(s)	504, 1610
BpuMI	CCSGG	2 cut(s)	446, 476
BsaJI	CCNNGG	4 cut(s)	45, 1771, 2161, 2404
Bsc4I	CCNNNNNNNGG	3 cut(s)	793, 844, 2167
Bse1I	ACTGG	4 cut(s)	134, 855, 984, 1546
Bse21I	CCTNAGG	1 cut(s)	170
Bse3DI	GCAATG	2 cut(s)	693, 1077
BseBI	CCWGG	3 cut(s)	888, 2055, 2441
BseDI	CCNNGG	4 cut(s)	45, 1771, 2161, 2404
BseGI	GGATG	6 cut(s)	89, 271, 484, 508, 1013, 1403
BseLI	CCNNNNNNNGG	3 cut(s)	793, 844, 2167
BseMI	GCAATG	2 cut(s)	693, 1077
BseMII	CTCAG	3 cut(s)	303, 1035, 1053
BseNI	ACTGG	4 cut(s)	134, 855, 984, 1546
BseRI	GAGGAG	1 cut(s)	1607
BseSI	GKGCMC	1 cut(s)	2418
BseXI	GCAGC	6 cut(s)	358, 688, 909, 1847, 2167, 2195
BsgI	GTGCAG	1 cut(s)	695
BshFI	GGCC	2 cut(s)	797, 1117
BshNI	GGYRCC	3 cut(s)	997, 1575, 1665
BsiHKAI	GWGCWC	2 cut(s)	441, 2418
BsiSI	CCGG	2 cut(s)	445, 476
BslFI	GGGAC	2 cut(s)	46, 1322
BslI	CCNNNNNNNGG	3 cut(s)	793, 844, 2167
BsmAI	GTCTC	4 cut(s)	1068, 1091, 1458, 1964
BsmFI	GGGAC	2 cut(s)	46, 1322
BsmI	GAATGC	1 cut(s)	1720
BsnI	GGCC	2 cut(s)	797, 1117
Bsp1286I	GDGCHC	3 cut(s)	441, 1366, 2418
Bsp1407I	TGTACA	1 cut(s)	1328
Bsp143I	GATC	8 cut(s)	165, 187, 274, 817, 1223, 1672, 1762, 1905
BspACI	CCGC	3 cut(s)	1663, 1759, 2155
BspANI	GGCC	2 cut(s)	797, 1117
BspCNI	CTCAG	3 cut(s)	304, 1034, 1054
BspHI	TCATGA	2 cut(s)	631, 2450
BspLI	GGNNCC	7 cut(s)	666, 999, 1363, 1577, 1667, 2159, 2410
BspMAI	CTGCAG	2 cut(s)	1472, 2185
BspMI	ACCTGC	1 cut(s)	846
BspPI	GGATC	3 cut(s)	160, 282, 1770
BspQI	GCTCTTC	2 cut(s)	446, 2018
BspT107I	GGYRCC	3 cut(s)	997, 1575, 1665
BsrDI	GCAATG	2 cut(s)	693, 1077
BsrGI	TGTACA	1 cut(s)	1328
BsrI	ACTGG	4 cut(s)	134, 855, 984, 1546
BssECI	CCNNGG	4 cut(s)	45, 1771, 2161, 2404
BssMI	GATC	8 cut(s)	165, 187, 274, 817, 1223, 1672, 1762, 1905
BssT1I	CCWWGG	4 cut(s)	45, 1771, 2161, 2404
Bst2UI	CCWGG	3 cut(s)	888, 2055, 2441
Bst4CI	ACNGT	7 cut(s)	288, 574, 1055, 1328, 1872, 1931, 1941
Bst6I	CTCTTC	4 cut(s)	446, 621, 1545, 2018
BstAPI	GCANNNNNTGC	2 cut(s)	838, 1660
BstAUI	TGTACA	1 cut(s)	1328
BstC8I	GCNNGC	2 cut(s)	1784, 2009
BstDEI	CTNAG	5 cut(s)	170, 312, 1021, 1062, 1604
BstENI	CCTNNNNNAGG	1 cut(s)	842
BstF5I	GGATG	6 cut(s)	89, 271, 484, 508, 1013, 1403
BstKTI	GATC	8 cut(s)	168, 190, 277, 820, 1226, 1675, 1765, 1908
BstMAI	GTCTC	4 cut(s)	1068, 1091, 1458, 1964
BstMBI	GATC	8 cut(s)	165, 187, 274, 817, 1223, 1672, 1762, 1905
BstMWI	GCNNNNNNNGC	7 cut(s)	494, 673, 838, 1171, 1180, 1660, 2177
BstNI	CCWGG	3 cut(s)	888, 2055, 2441
BstNSI	RCATGY	3 cut(s)	367, 702, 2355
BstSCI	CCNGG	5 cut(s)	444, 474, 886, 2053, 2439
BstSFI	CTRYAG	3 cut(s)	573, 1468, 2181
BstSLI	GKGCMC	1 cut(s)	2418
BstV1I	GCAGC	6 cut(s)	358, 688, 909, 1847, 2167, 2195
BstV2I	GAAGAC	2 cut(s)	518, 620
BstX2I	RGATCY	2 cut(s)	165, 1762
BstYI	RGATCY	2 cut(s)	165, 1762
Bsu36I	CCTNAGG	1 cut(s)	170
BsuRI	GGCC	2 cut(s)	797, 1117
BtsCI	GGATG	6 cut(s)	89, 271, 484, 508, 1013, 1403
BtsI	GCAGTG	1 cut(s)	2416
BtsIMutI	CAGTG	3 cut(s)	1060, 1937, 2416
BveI	ACCTGC	1 cut(s)	846
Cac8I	GCNNGC	2 cut(s)	1784, 2009
CaiI	CAGNNNCTG	4 cut(s)	887, 1467, 1939, 1973
CciI	TCATGA	2 cut(s)	631, 2450
Cfr13I	GGNCC	3 cut(s)	131, 796, 1528
CsiI	ACCWGGT	1 cut(s)	2439
Csp6I	GTAC	7 cut(s)	848, 998, 1329, 1539, 1576, 1666, 2435
CspCI	CAANNNNNGTGG	2 cut(s)	1677, 1712
CviQI	GTAC	7 cut(s)	848, 998, 1329, 1539, 1576, 1666, 2435
DdeI	CTNAG	5 cut(s)	170, 312, 1021, 1062, 1604
DpnI	GATC	8 cut(s)	167, 189, 276, 819, 1225, 1674, 1764, 1907
DpnII	GATC	8 cut(s)	165, 187, 274, 817, 1223, 1672, 1762, 1905
DraI	TTTAAA	3 cut(s)	709, 1132, 2290
DraIII	CACNNNGTG	1 cut(s)	1943
EaeI	YGGCCR	1 cut(s)	1115
Eam1104I	CTCTTC	4 cut(s)	446, 621, 1545, 2018
EarI	CTCTTC	4 cut(s)	446, 621, 1545, 2018
Ecl136II	GAGCTC	1 cut(s)	439
Eco130I	CCWWGG	4 cut(s)	45, 1771, 2161, 2404
Eco24I	GRGCYC	2 cut(s)	441, 1366
Eco47I	GGWCC	2 cut(s)	131, 1528
Eco53kI	GAGCTC	1 cut(s)	439
Eco57I	CTGAAG	3 cut(s)	602, 1712, 2130
Eco81I	CCTNAGG	1 cut(s)	170
EcoICRI	GAGCTC	1 cut(s)	439
EcoNI	CCTNNNNNAGG	1 cut(s)	842
EcoO109I	RGGNCCY	1 cut(s)	796
EcoRI	GAATTC	2 cut(s)	1511, 1741
EcoRII	CCWGG	3 cut(s)	886, 2053, 2439
EcoT14I	CCWWGG	4 cut(s)	45, 1771, 2161, 2404
EcoT22I	ATGCAT	1 cut(s)	1567
EcoT38I	GRGCYC	2 cut(s)	441, 1366
ErhI	CCWWGG	4 cut(s)	45, 1771, 2161, 2404
FalI	AAGNNNNNCTT	2 cut(s)	672, 704
FaqI	GGGAC	2 cut(s)	46, 1322
FauI	CCCGC	1 cut(s)	1752
FbaI	TGATCA	1 cut(s)	1905
Fnu4HI	GCNGC	6 cut(s)	372, 677, 898, 1836, 2181, 2184
FokI	GGATG	6 cut(s)	96, 278, 491, 515, 1000, 1410
FriOI	GRGCYC	2 cut(s)	441, 1366
Fsp4HI	GCNGC	6 cut(s)	372, 677, 898, 1836, 2181, 2184
FspBI	CTAG	7 cut(s)	95, 743, 842, 1166, 1205, 1772, 1998
GluI	GCNGC	6 cut(s)	372, 677, 898, 1836, 2181, 2184
GsuI	CTGGAG	2 cut(s)	1092, 1271
HaeIII	GGCC	2 cut(s)	797, 1117
HapII	CCGG	2 cut(s)	445, 476
HindIII	AAGCTT	1 cut(s)	429
HpaII	CCGG	2 cut(s)	445, 476
HphI	GGTGA	2 cut(s)	187, 2355
Hpy166II	GTNNAC	6 cut(s)	716, 868, 925, 989, 2416, 2437
Hpy8I	GTNNAC	6 cut(s)	716, 868, 925, 989, 2416, 2437
HpyAV	CCTTC	7 cut(s)	203, 403, 580, 678, 935, 1027, 2092
HpyCH4III	ACNGT	7 cut(s)	288, 574, 1055, 1328, 1872, 1931, 1941
HpyCH4IV	ACGT	2 cut(s)	1912, 2275
HpyF10VI	GCNNNNNNNGC	7 cut(s)	494, 673, 838, 1171, 1180, 1660, 2177
HpyF3I	CTNAG	5 cut(s)	170, 312, 1021, 1062, 1604
HpySE526I	ACGT	2 cut(s)	1912, 2275
KpnI	GGTACC	3 cut(s)	1001, 1579, 1669
Ksp22I	TGATCA	1 cut(s)	1905
Kzo9I	GATC	8 cut(s)	165, 187, 274, 817, 1223, 1672, 1762, 1905
LguI	GCTCTTC	2 cut(s)	446, 2018
LmnI	GCTCC	3 cut(s)	664, 1361, 2101
Lsp1109I	GCAGC	6 cut(s)	358, 688, 909, 1847, 2167, 2195
LweI	GCATC	6 cut(s)	74, 256, 1048, 1388, 1552, 1574
MabI	ACCWGGT	1 cut(s)	2439
MaeI	CTAG	7 cut(s)	95, 743, 842, 1166, 1205, 1772, 1998
MaeII	ACGT	2 cut(s)	1912, 2275
MaeIII	GTNAC	6 cut(s)	1411, 1896, 1943, 1958, 2233, 2383
MalI	GATC	8 cut(s)	167, 189, 276, 819, 1225, 1674, 1764, 1907
MboI	GATC	8 cut(s)	165, 187, 274, 817, 1223, 1672, 1762, 1905
MfeI	CAATTG	6 cut(s)	39, 278, 545, 1681, 1850, 2244
MflI	RGATCY	2 cut(s)	165, 1762
MhlI	GDGCHC	3 cut(s)	441, 1366, 2418
MlsI	TGGCCA	1 cut(s)	1117
MluNI	TGGCCA	1 cut(s)	1117
MlyI	GAGTC	2 cut(s)	1396, 1904
MmeI	TCCRAC	4 cut(s)	85, 1339, 1445, 1506
Mox20I	TGGCCA	1 cut(s)	1117
Mph1103I	ATGCAT	1 cut(s)	1567
MroXI	GAANNNNTTC	3 cut(s)	864, 1725, 1980
MscI	TGGCCA	1 cut(s)	1117
Msp20I	TGGCCA	1 cut(s)	1117
MspA1I	CMGCKG	2 cut(s)	1838, 2186
MspI	CCGG	2 cut(s)	445, 476
MspR9I	CCNGG	5 cut(s)	446, 476, 888, 2055, 2441
MunI	CAATTG	6 cut(s)	39, 278, 545, 1681, 1850, 2244
Mva1269I	GAATGC	1 cut(s)	1720
MvaI	CCWGG	3 cut(s)	888, 2055, 2441
MwoI	GCNNNNNNNGC	7 cut(s)	494, 673, 838, 1171, 1180, 1660, 2177
NciI	CCSGG	2 cut(s)	446, 476
NdeII	GATC	8 cut(s)	165, 187, 274, 817, 1223, 1672, 1762, 1905
NlaIV	GGNNCC	7 cut(s)	666, 999, 1363, 1577, 1667, 2159, 2410
NmuCI	GTSAC	4 cut(s)	1896, 1943, 1958, 2233
NsiI	ATGCAT	1 cut(s)	1567
NspI	RCATGY	3 cut(s)	367, 702, 2355
PagI	TCATGA	2 cut(s)	631, 2450
PciI	ACATGT	1 cut(s)	2351
PciSI	GCTCTTC	2 cut(s)	446, 2018
PctI	GAATGC	1 cut(s)	1720
PdmI	GAANNNNTTC	3 cut(s)	864, 1725, 1980
PflMI	CCANNNNNTGG	1 cut(s)	2167
PfoI	TCCNGGA	2 cut(s)	474, 2053
PkrI	GCNGC	6 cut(s)	373, 678, 899, 1837, 2182, 2185
PleI	GAGTC	2 cut(s)	1395, 1903
PpsI	GAGTC	2 cut(s)	1395, 1903
PscI	ACATGT	1 cut(s)	2351
PshBI	ATTAAT	1 cut(s)	257
PsiI	TTATAA	2 cut(s)	57, 654
Psp124BI	GAGCTC	1 cut(s)	441
Psp6I	CCWGG	3 cut(s)	886, 2053, 2439
PspGI	CCWGG	3 cut(s)	886, 2053, 2439
PspN4I	GGNNCC	7 cut(s)	666, 999, 1363, 1577, 1667, 2159, 2410
PspPI	GGNCC	3 cut(s)	131, 796, 1528
PsrI	GAACNNNNNNTAC	2 cut(s)	383, 415
PstI	CTGCAG	2 cut(s)	1472, 2185
PstNI	CAGNNNCTG	4 cut(s)	887, 1467, 1939, 1973
PsuI	RGATCY	2 cut(s)	165, 1762
PvuII	CAGCTG	2 cut(s)	1838, 2186
RsaI	GTAC	7 cut(s)	849, 999, 1330, 1540, 1577, 1667, 2436
RsaNI	GTAC	7 cut(s)	848, 998, 1329, 1539, 1576, 1666, 2435
SacI	GAGCTC	1 cut(s)	441
SapI	GCTCTTC	2 cut(s)	446, 2018
SatI	GCNGC	6 cut(s)	372, 677, 898, 1836, 2181, 2184
Sau3AI	GATC	8 cut(s)	165, 187, 274, 817, 1223, 1672, 1762, 1905
Sau96I	GGNCC	3 cut(s)	131, 796, 1528
SchI	GAGTC	2 cut(s)	1396, 1904
ScrFI	CCNGG	5 cut(s)	446, 476, 888, 2055, 2441
SduI	GDGCHC	3 cut(s)	441, 1366, 2418
SexAI	ACCWGGT	1 cut(s)	2439
SfaNI	GCATC	6 cut(s)	74, 256, 1048, 1388, 1552, 1574
SfcI	CTRYAG	3 cut(s)	573, 1468, 2181
SinI	GGWCC	2 cut(s)	131, 1528
SmlI	CTYRAG	2 cut(s)	519, 1589
SmoI	CTYRAG	2 cut(s)	519, 1589
SsiI	CCGC	3 cut(s)	1663, 1759, 2155
SspI	AATATT	2 cut(s)	1043, 1981
SspMI	CTAG	7 cut(s)	95, 743, 842, 1166, 1205, 1772, 1998
SstI	GAGCTC	1 cut(s)	441
StyD4I	CCNGG	5 cut(s)	444, 474, 886, 2053, 2439
StyI	CCWWGG	4 cut(s)	45, 1771, 2161, 2404
TaaI	ACNGT	7 cut(s)	288, 574, 1055, 1328, 1872, 1931, 1941
TaiI	ACGT	2 cut(s)	1915, 2278
TaqI	TCGA	2 cut(s)	161, 1548
TatI	WGTACW	1 cut(s)	1328
TscAI	CASTG	3 cut(s)	1060, 1944, 2423
TseFI	GTSAC	4 cut(s)	1896, 1943, 1958, 2233
TseI	GCWGC	6 cut(s)	371, 676, 897, 1835, 2180, 2183
Tsp45I	GTSAC	4 cut(s)	1896, 1943, 1958, 2233
TspDTI	ATGAA	8 cut(s)	230, 435, 441, 620, 782, 1504, 2273, 2329
TspGWI	ACGGA	3 cut(s)	519, 1116, 2401
TspRI	CASTG	3 cut(s)	1060, 1944, 2423
Van91I	CCANNNNNTGG	1 cut(s)	2167
VneI	GTGCAC	1 cut(s)	2414
VpaK11BI	GGWCC	2 cut(s)	131, 1528
VspI	ATTAAT	1 cut(s)	257
XagI	CCTNNNNNAGG	1 cut(s)	842
XapI	RAATTY	9 cut(s)	780, 1214, 1300, 1511, 1741, 1797, 2036, 2120, 2143
XbaI	TCTAGA	1 cut(s)	94
XceI	RCATGY	3 cut(s)	367, 702, 2355
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1821
XmaJI	CCTAGG	1 cut(s)	1771
XmnI	GAANNNNTTC	3 cut(s)	864, 1725, 1980
XspI	CTAG	7 cut(s)	95, 743, 842, 1166, 1205, 1772, 1998
Zsp2I	ATGCAT	1 cut(s)	1567

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.