Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0008889

Physical Location & Seq

Genomic Coordinates Forward (+)

48583993 .. 48593034

Gene Structure 9042 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00201110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1575 bp

ATGGTAAAGTTGCCTGAACCAGATGAGATAGTATTGAGTGCTGCAAGCTTTTCACGGATGAAAAATCTTAAATACTTCATAAACTGTAATGCATCTTTTTCGGGATACATTGATTATCTCCCTGATGAGTTGAGGCTAATTGATTGGCCTGCATTTCCTTTCGAATCTTTACCAATCAATTTTATTCCGAGGAAGCTTGTTAAACTCAGTATGCCTCGCAGCTGCATGTCACAACTGGGGGAGAGATTCAAGCACTCCAAAACTCTGAAATATATAAATCTGGAAAGCTGCCCATTCTTGACAGAAATCCCGAACTTGTCTGGATTTCCAAATTTAAGGCACTTGAATTTGAGCAACTGTACGGCTTTAGTTGAGCTTGATGATTCTATTGGATTCCTCAATATGCTTGTGTCTTTAAGTCTTTCAGGATGCCGTAATATTACTAAGTTTCCAAGAAGAATCGCCTTGAAATCTGCAATACATATTAGTCTTAGAGGTTGCAGAATGCTTGAGTCTTTCCCCGCAATTGTAAAAAGGATGGAGTGCTTGACAAGCTTAGATCTATCCGGCACTGCCATCAAAGAATTGCCTTCACAAATTGCATCTCTGATTTGCCTTGAAGAGCTAACTATAAGAGAATGTGACAACCTTACTACTCTTCCATGCAGCATATATGATTTGCAGAATTTGGGGTCTCTTGATCTCCAAGGCTGCTCAAAACTTGTTACGTTTCCAAAATGGTGTGCGGAATCAGTCCCAACATACTTGAACATTTCACATGACTTGACTTATCTAAATCTACGTGGCTGCAGGATGCTTGAGGAAATTCCTGAACTTCCACCAAAAGTGAAATGGGTAAATGCGGCTGATTGCTTATTGTTGGAACGATTTACGAAATTATCAAACATCTTGGAACATAGAGAGTCGCAAATGATCAAATGTGTTTCACTGTTGAATTGTCAGAGACTGTGTGGAAGTCTGGCCAACAAAATGGAAGAGATTGAAGATACTCTACTGAATGAGGTCACTCTCTGCTCTCTGTTTCTCTCATGCAAGCAATCTGAATTCAACGTTATTTTTCCAGGAGCTGAAGTTCCAAAGTGGTTCAACCATTGGAAGTATTTGAGTAATCCAGTTGATACATCTGAATTTTCTTTTGAAATCCCTCTCAATTTCAAATTGGGGGACAAAGGATTGGCTATATGTGCAGTGGCTACTTCTGTAGATGATCTTGGTCATTGCGCTTTCACAGCCAGAATTAGCATTCAGGAAGAAAGTAGTATTACACGTTCGTTTAGTTTTGAAGCAAAAGAAATGGTGTCAGCTCATGTGTGGCTGCTCTATATTCCATTGGTTAACTTTGCTCATCGTCAATCCTTGCCTTTTACCTGTCGAGTTACTTTGGAACATACTAGCCAAGGTTCAGCGCGCTGTAAAAGCTATGGGGTGCACCTAGTAATGCCCCAAGGTGAATATGATGACTACATGGAAGATGACTACTCCGTCTGCTCATCTAGTGAAGATGATGAGAGTAATATTACATTTCAGATTGGAAAAAGAAAAAAGAGAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC TIR

Protein Analysis

524

Amino Acids

59.43

Weight (kDa)

6.06

Isoelectric Point (pI)

52.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_13	PF23286	162 - 242	8.1e-09	Disease resistance protein RPS4B-like, leucine-rich repeats
LRR_14	PF23598	181 - 240	6.1e-07	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008889)

Species	Orthologous Gene IDs
prunus_persica	Prupe.8G110000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0262301 RchiOBHm_Chr6g0262321
rosa_laevigata	RLG00000014024 RLG00000014034 RLG00000014334 RLG00000014342 RLG00000035301
rosa_multiflora	Rmu_sc0000565.1_g000041 Rmu_sc0002938.1_g000003 Rmu_sc0002938.1_g000011 Rmu_ssc0000388.1_g000023
rosa_roxburghii	Rroxscaffold_7G00201070 Rroxscaffold_7G00201110 Rroxscaffold_7G00204190 Rroxscaffold_7G00204430
rosa_rugosa	Rorug06G0029600 Rorug06G0029800
rosa_samantha	Rh1AG095400 Rh1AG095600 Rh6AG151300 Rh6DG136200
rosa_wichuraiana	Rw6G013100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1502
AccII	CGCG	1 cut(s)	1429
AciI	CCGC	3 cut(s)	522, 746, 863
AclI	AACGTT	1 cut(s)	1071
AcoI	YGGCCR	1 cut(s)	981
AcsI	RAATTY	6 cut(s)	331, 346, 685, 825, 1064, 1148
AcuI	CTGAAG	1 cut(s)	1110
AfaI	GTAC	1 cut(s)	361
AflIII	ACRYGT	1 cut(s)	1286
AjnI	CCWGG	1 cut(s)	1081
AloI	GAACNNNNNNTCC	2 cut(s)	1077, 1109
Alw21I	GWGCWC	1 cut(s)	1452
Alw26I	GTCTC	2 cut(s)	699, 958
Alw44I	GTGCAC	1 cut(s)	1448
AlwNI	CAGNNNCTG	2 cut(s)	967, 1088
AoxI	GGCC	2 cut(s)	146, 981
ApaLI	GTGCAC	1 cut(s)	1448
ApeKI	GCWGC	8 cut(s)	41, 219, 222, 288, 666, 711, 807, 1336
ApoI	RAATTY	6 cut(s)	331, 346, 685, 825, 1064, 1148
AspLEI	GCGC	3 cut(s)	1244, 1429, 1431
AsuHPI	GGTGA	1 cut(s)	1481
AsuII	TTCGAA	1 cut(s)	162
BaeGI	GKGCMC	1 cut(s)	1452
BalI	TGGCCA	1 cut(s)	983
BarI	GAAGNNNNNNTAC	2 cut(s)	996, 1028
Bbv12I	GWGCWC	1 cut(s)	1452
BbvI	GCAGC	8 cut(s)	28, 209, 231, 275, 678, 698, 794, 1323
BccI	CCATC	2 cut(s)	532, 584
BceAI	ACGGC	2 cut(s)	378, 417
BcgI	CGANNNNNNTGC	2 cut(s)	81, 115
BciT130I	CCWGG	1 cut(s)	1083
BciVI	GTATCC	1 cut(s)	98
BclI	TGATCA	1 cut(s)	933
BcoDI	GTCTC	2 cut(s)	699, 958
BfaI	CTAG	3 cut(s)	1413, 1454, 1515
BfmI	CTRYAG	2 cut(s)	808, 1221
BfuI	GTATCC	1 cut(s)	98
BglII	AGATCT	1 cut(s)	559
BisI	GCNGC	9 cut(s)	42, 220, 223, 289, 667, 712, 808, 864, 1337
BlsI	GCNGC	9 cut(s)	43, 221, 224, 290, 668, 713, 809, 865, 1338
Bme1390I	CCNGG	1 cut(s)	1083
BmrFI	CCNGG	1 cut(s)	1083
BmrI	ACTGGG	1 cut(s)	245
BmsI	GCATC	4 cut(s)	101, 419, 611, 804
BmuI	ACTGGG	1 cut(s)	245
Bpu14I	TTCGAA	1 cut(s)	162
BpuEI	CTTGAG	2 cut(s)	530, 839
BsaAI	YACGTR	1 cut(s)	803
BsaI	GGTCTC	1 cut(s)	699
BsaJI	CCNNGG	4 cut(s)	188, 706, 1417, 1465
BsaXI	ACNNNNNCTCC	2 cut(s)	1077, 1107
Bse1I	ACTGG	2 cut(s)	240, 1133
Bse3DI	GCAATG	1 cut(s)	1237
BseBI	CCWGG	1 cut(s)	1083
BseDI	CCNNGG	4 cut(s)	188, 706, 1417, 1465
BseGI	GGATG	4 cut(s)	63, 434, 543, 819
BseMI	GCAATG	1 cut(s)	1237
BseMII	CTCAG	1 cut(s)	220
BseNI	ACTGG	2 cut(s)	240, 1133
BsePI	GCGCGC	1 cut(s)	1427
BseSI	GKGCMC	1 cut(s)	1452
BseXI	GCAGC	8 cut(s)	28, 209, 231, 275, 678, 698, 794, 1323
BsgI	GTGCAG	1 cut(s)	1227
Bsh1236I	CGCG	1 cut(s)	1429
BshFI	GGCC	2 cut(s)	148, 983
BsiHKAI	GWGCWC	1 cut(s)	1452
BsiSI	CCGG	1 cut(s)	567
BslFI	GGGAC	2 cut(s)	740, 1199
BsmAI	GTCTC	2 cut(s)	699, 958
BsmFI	GGGAC	2 cut(s)	740, 1199
BsmI	GAATGC	2 cut(s)	510, 1263
BsnI	GGCC	2 cut(s)	148, 983
Bso31I	GGTCTC	1 cut(s)	699
Bsp119I	TTCGAA	1 cut(s)	162
Bsp1286I	GDGCHC	1 cut(s)	1452
Bsp143I	GATC	4 cut(s)	559, 700, 933, 1228
BspACI	CCGC	3 cut(s)	522, 746, 863
BspANI	GGCC	2 cut(s)	148, 983
BspCNI	CTCAG	1 cut(s)	219
BspFNI	CGCG	1 cut(s)	1429
BspMAI	CTGCAG	1 cut(s)	812
BspQI	GCTCTTC	1 cut(s)	615
BspT104I	TTCGAA	1 cut(s)	162
BspTNI	GGTCTC	1 cut(s)	699
BsrDI	GCAATG	1 cut(s)	1237
BsrI	ACTGG	2 cut(s)	240, 1133
BssECI	CCNNGG	4 cut(s)	188, 706, 1417, 1465
BssHII	GCGCGC	1 cut(s)	1427
BssMI	GATC	4 cut(s)	559, 700, 933, 1228
BssT1I	CCWWGG	3 cut(s)	706, 1417, 1465
Bst2UI	CCWGG	1 cut(s)	1083
Bst4CI	ACNGT	4 cut(s)	86, 359, 951, 969
Bst6I	CTCTTC	3 cut(s)	615, 663, 990
BstBAI	YACGTR	1 cut(s)	803
BstBI	TTCGAA	1 cut(s)	162
BstC8I	GCNNGC	4 cut(s)	46, 150, 1055, 1429
BstDEI	CTNAG	4 cut(s)	206, 444, 491, 556
BstF5I	GGATG	4 cut(s)	63, 434, 543, 819
BstFNI	CGCG	1 cut(s)	1429
BstHHI	GCGC	3 cut(s)	1244, 1429, 1431
BstKTI	GATC	4 cut(s)	562, 703, 936, 1231
BstMAI	GTCTC	2 cut(s)	699, 958
BstMBI	GATC	4 cut(s)	559, 700, 933, 1228
BstMWI	GCNNNNNNNGC	4 cut(s)	552, 1205, 1250, 1437
BstNI	CCWGG	1 cut(s)	1083
BstNSI	RCATGY	1 cut(s)	229
BstSCI	CCNGG	1 cut(s)	1081
BstSFI	CTRYAG	2 cut(s)	808, 1221
BstSLI	GKGCMC	1 cut(s)	1452
BstUI	CGCG	1 cut(s)	1429
BstV1I	GCAGC	8 cut(s)	28, 209, 231, 275, 678, 698, 794, 1323
BstX2I	RGATCY	1 cut(s)	559
BstXI	CCANNNNNNTGG	1 cut(s)	991
BstYI	RGATCY	1 cut(s)	559
BsuI	GTATCC	1 cut(s)	98
BsuRI	GGCC	2 cut(s)	148, 983
BtsCI	GGATG	4 cut(s)	63, 434, 543, 819
BtsI	GCAGTG	2 cut(s)	570, 1215
BtsIMutI	CAGTG	3 cut(s)	570, 947, 1215
Cac8I	GCNNGC	4 cut(s)	46, 150, 1055, 1429
CaiI	CAGNNNCTG	2 cut(s)	967, 1088
CfoI	GCGC	3 cut(s)	1244, 1429, 1431
Csp6I	GTAC	1 cut(s)	360
CviAII	CATG	6 cut(s)	226, 663, 779, 1050, 1328, 1486
CviQI	GTAC	1 cut(s)	360
DdeI	CTNAG	4 cut(s)	206, 444, 491, 556
DpnI	GATC	4 cut(s)	561, 702, 935, 1230
DpnII	GATC	4 cut(s)	559, 700, 933, 1228
DrdI	GACNNNNNNGTC	1 cut(s)	1502
DseDI	GACNNNNNNGTC	1 cut(s)	1502
EaeI	YGGCCR	1 cut(s)	981
Eam1104I	CTCTTC	3 cut(s)	615, 663, 990
EarI	CTCTTC	3 cut(s)	615, 663, 990
Eco130I	CCWWGG	3 cut(s)	706, 1417, 1465
Eco31I	GGTCTC	1 cut(s)	699
Eco57I	CTGAAG	1 cut(s)	1110
EcoRI	GAATTC	1 cut(s)	1064
EcoRII	CCWGG	1 cut(s)	1081
EcoT14I	CCWWGG	3 cut(s)	706, 1417, 1465
EcoT22I	ATGCAT	1 cut(s)	94
ErhI	CCWWGG	3 cut(s)	706, 1417, 1465
FaeI	CATG	6 cut(s)	229, 666, 782, 1053, 1331, 1489
FaqI	GGGAC	2 cut(s)	740, 1199
FatI	CATG	6 cut(s)	225, 662, 778, 1049, 1327, 1485
FauI	CCCGC	1 cut(s)	529
FbaI	TGATCA	1 cut(s)	933
Fnu4HI	GCNGC	9 cut(s)	42, 220, 223, 289, 667, 712, 808, 864, 1337
FokI	GGATG	4 cut(s)	70, 441, 550, 826
Fsp4HI	GCNGC	9 cut(s)	42, 220, 223, 289, 667, 712, 808, 864, 1337
FspBI	CTAG	3 cut(s)	1413, 1454, 1515
GlaI	GCGC	3 cut(s)	1243, 1428, 1430
GluI	GCNGC	9 cut(s)	42, 220, 223, 289, 667, 712, 808, 864, 1337
HaeIII	GGCC	2 cut(s)	148, 983
HapII	CCGG	1 cut(s)	567
HhaI	GCGC	3 cut(s)	1244, 1429, 1431
Hin1II	CATG	6 cut(s)	229, 666, 782, 1053, 1331, 1489
Hin6I	GCGC	3 cut(s)	1242, 1427, 1429
HinP1I	GCGC	3 cut(s)	1242, 1427, 1429
HincII	GTYRAC	1 cut(s)	1357
HindII	GTYRAC	1 cut(s)	1357
HindIII	AAGCTT	3 cut(s)	46, 194, 553
HinfI	GANTC	8 cut(s)	164, 246, 383, 393, 459, 512, 749, 923
HpaI	GTTAAC	1 cut(s)	1357
HpaII	CCGG	1 cut(s)	567
HphI	GGTGA	1 cut(s)	1481
Hpy166II	GTNNAC	2 cut(s)	1357, 1450
Hpy188I	TCNGA	7 cut(s)	189, 267, 609, 963, 1063, 1147, 1548
Hpy188III	TCNNGA	9 cut(s)	102, 281, 298, 310, 321, 426, 698, 830, 1268
Hpy8I	GTNNAC	2 cut(s)	1357, 1450
HpyAV	CCTTC	1 cut(s)	600
HpyCH4III	ACNGT	4 cut(s)	86, 359, 951, 969
HpyCH4IV	ACGT	4 cut(s)	728, 802, 1071, 1288
HpyF10VI	GCNNNNNNNGC	4 cut(s)	552, 1205, 1250, 1437
HpyF3I	CTNAG	4 cut(s)	206, 444, 491, 556
HpySE526I	ACGT	4 cut(s)	728, 802, 1071, 1288
Hsp92II	CATG	6 cut(s)	229, 666, 782, 1053, 1331, 1489
HspAI	GCGC	3 cut(s)	1242, 1427, 1429
Ksp22I	TGATCA	1 cut(s)	933
KspAI	GTTAAC	1 cut(s)	1357
Kzo9I	GATC	4 cut(s)	559, 700, 933, 1228
LguI	GCTCTTC	1 cut(s)	615
LmnI	GCTCC	1 cut(s)	1085
Lsp1109I	GCAGC	8 cut(s)	28, 209, 231, 275, 678, 698, 794, 1323
LweI	GCATC	4 cut(s)	101, 419, 611, 804
MaeI	CTAG	3 cut(s)	1413, 1454, 1515
MaeII	ACGT	4 cut(s)	728, 802, 1071, 1288
MaeIII	GTNAC	5 cut(s)	228, 641, 724, 1024, 1396
MalI	GATC	4 cut(s)	561, 702, 935, 1230
MboI	GATC	4 cut(s)	559, 700, 933, 1228
MboII	GAAGA	8 cut(s)	468, 632, 650, 1007, 1016, 1283, 1502, 1532
MfeI	CAATTG	1 cut(s)	525
MflI	RGATCY	1 cut(s)	559
MhlI	GDGCHC	1 cut(s)	1452
MlsI	TGGCCA	1 cut(s)	983
MluNI	TGGCCA	1 cut(s)	983
MlyI	GAGTC	2 cut(s)	521, 932
MmeI	TCCRAC	1 cut(s)	861
MnlI	CCTC	8 cut(s)	126, 183, 225, 407, 488, 814, 1015, 1176
Mox20I	TGGCCA	1 cut(s)	983
Mph1103I	ATGCAT	1 cut(s)	94
MscI	TGGCCA	1 cut(s)	983
MseI	TTAA	5 cut(s)	69, 201, 335, 416, 1356
Msp20I	TGGCCA	1 cut(s)	983
MspA1I	CMGCKG	1 cut(s)	222
MspI	CCGG	1 cut(s)	567
MspR9I	CCNGG	1 cut(s)	1083
MunI	CAATTG	1 cut(s)	525
Mva1269I	GAATGC	2 cut(s)	510, 1263
MvaI	CCWGG	1 cut(s)	1083
MvnI	CGCG	1 cut(s)	1429
MwoI	GCNNNNNNNGC	4 cut(s)	552, 1205, 1250, 1437
NdeII	GATC	4 cut(s)	559, 700, 933, 1228
NlaIII	CATG	6 cut(s)	229, 666, 782, 1053, 1331, 1489
NmuCI	GTSAC	3 cut(s)	228, 641, 1024
NsiI	ATGCAT	1 cut(s)	94
NspI	RCATGY	1 cut(s)	229
NspV	TTCGAA	1 cut(s)	162
PauI	GCGCGC	1 cut(s)	1427
PciSI	GCTCTTC	1 cut(s)	615
PctI	GAATGC	2 cut(s)	510, 1263
PfeI	GAWTC	6 cut(s)	164, 246, 383, 393, 459, 749
PfoI	TCCNGGA	1 cut(s)	1081
PkrI	GCNGC	9 cut(s)	43, 221, 224, 290, 668, 713, 809, 865, 1338
PleI	GAGTC	2 cut(s)	520, 931
PpsI	GAGTC	2 cut(s)	520, 931
Ppu21I	YACGTR	1 cut(s)	803
Psp1406I	AACGTT	1 cut(s)	1071
Psp6I	CCWGG	1 cut(s)	1081
PspGI	CCWGG	1 cut(s)	1081
PsrI	GAACNNNNNNTAC	2 cut(s)	1273, 1305
PstI	CTGCAG	1 cut(s)	812
PstNI	CAGNNNCTG	2 cut(s)	967, 1088
PsuI	RGATCY	1 cut(s)	559
PteI	GCGCGC	1 cut(s)	1427
PvuII	CAGCTG	1 cut(s)	222
RsaI	GTAC	1 cut(s)	361
RsaNI	GTAC	1 cut(s)	360
SapI	GCTCTTC	1 cut(s)	615
SaqAI	TTAA	5 cut(s)	69, 201, 335, 416, 1356
SatI	GCNGC	9 cut(s)	42, 220, 223, 289, 667, 712, 808, 864, 1337
Sau3AI	GATC	4 cut(s)	559, 700, 933, 1228
SchI	GAGTC	2 cut(s)	521, 932
ScrFI	CCNGG	1 cut(s)	1083
SduI	GDGCHC	1 cut(s)	1452
SfaNI	GCATC	4 cut(s)	101, 419, 611, 804
SfcI	CTRYAG	2 cut(s)	808, 1221
SfuI	TTCGAA	1 cut(s)	162
SmlI	CTYRAG	2 cut(s)	509, 818
SmoI	CTYRAG	2 cut(s)	509, 818
SsiI	CCGC	3 cut(s)	522, 746, 863
SspI	AATATT	2 cut(s)	439, 1537
SspMI	CTAG	3 cut(s)	1413, 1454, 1515
StyD4I	CCNGG	1 cut(s)	1081
StyI	CCWWGG	3 cut(s)	706, 1417, 1465
TaaI	ACNGT	4 cut(s)	86, 359, 951, 969
TaiI	ACGT	4 cut(s)	731, 805, 1074, 1291
TaqI	TCGA	2 cut(s)	162, 1393
TauI	GCSGC	1 cut(s)	866
TfiI	GAWTC	6 cut(s)	164, 246, 383, 393, 459, 749
Tru1I	TTAA	5 cut(s)	69, 201, 335, 416, 1356
Tru9I	TTAA	5 cut(s)	69, 201, 335, 416, 1356
TscAI	CASTG	3 cut(s)	577, 954, 1215
TseFI	GTSAC	3 cut(s)	228, 641, 1024
TseI	GCWGC	8 cut(s)	41, 219, 222, 288, 666, 711, 807, 1336
Tsp45I	GTSAC	3 cut(s)	228, 641, 1024
TspDTI	ATGAA	2 cut(s)	67, 74
TspGWI	ACGGA	2 cut(s)	70, 1492
TspRI	CASTG	3 cut(s)	577, 954, 1215
VneI	GTGCAC	1 cut(s)	1448
XapI	RAATTY	6 cut(s)	331, 346, 685, 825, 1064, 1148
XceI	RCATGY	1 cut(s)	229
XcmI	CCANNNNNNNNNTGG	1 cut(s)	849
XspI	CTAG	3 cut(s)	1413, 1454, 1515
Zsp2I	ATGCAT	1 cut(s)	94

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.