Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0008889

Physical Location & Seq

Genomic Coordinates Reverse (-)

64553386 .. 64557247

Gene Structure 3862 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035301

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGAATCCCTAACCCTGAATTCCAGTTGGTATTTCCAGGCAGTAAAGTTCCAAGATATTAGATCAGGGAACAAAGGATTGGCCATCTGTGCTGCAGCTACTACTGTAGATGATTCTGGTGAGTGCTCAATTGCAGCTAATGTTTATATCAATAAGCATATAATGTCTACAACCTTGTTCTGTTTTGAAGCAAAAGAGATGGGGCACTCGGGTCATGTGTGGATGTGTTATATTCCATTCGTTAAGTTGGGTCATCGGCCGCCTTTTACCTGTCGGGAAGTCAAGTTTCAAGTTTCTTCAGGCATGGAAACTATTGCTGCAGGCAATTGTGGTCTGTGCTCTTTCACAGCTGAAATTCACATCAGTGCAGAAAGCAGCAGTACACATTTGGTTCTGTTTCGAAGCAAGCGAGGTGCGGAGGTGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC TIR

Protein Analysis

143

Amino Acids

15.58

Weight (kDa)

6.58

Isoelectric Point (pI)

47.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008889)

Species	Orthologous Gene IDs
prunus_persica	Prupe.8G110000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0262301 RchiOBHm_Chr6g0262321
rosa_laevigata	RLG00000014024 RLG00000014034 RLG00000014334 RLG00000014342 RLG00000035301
rosa_multiflora	Rmu_sc0000565.1_g000041 Rmu_sc0002938.1_g000003 Rmu_sc0002938.1_g000011 Rmu_ssc0000388.1_g000023
rosa_roxburghii	Rroxscaffold_7G00201070 Rroxscaffold_7G00201110 Rroxscaffold_7G00204190 Rroxscaffold_7G00204430
rosa_rugosa	Rorug06G0029600 Rorug06G0029800
rosa_samantha	Rh1AG095400 Rh1AG095600 Rh6AG151300 Rh6DG136200
rosa_wichuraiana	Rw6G013100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	167
AciI	CCGC	2 cut(s)	260, 416
AcoI	YGGCCR	2 cut(s)	81, 257
AcsI	RAATTY	2 cut(s)	19, 354
AcuI	CTGAAG	1 cut(s)	282
AfaI	GTAC	1 cut(s)	382
AgsI	TTSAA	2 cut(s)	188, 290
AjnI	CCWGG	1 cut(s)	36
AjuI	GAANNNNNNNTTGG	2 cut(s)	62, 94
AleI	CACNNNNGTG	1 cut(s)	363
AluBI	AGCT	3 cut(s)	98, 137, 350
AluI	AGCT	3 cut(s)	98, 137, 350
Alw21I	GWGCWC	2 cut(s)	128, 341
Ama87I	CYCGRG	1 cut(s)	208
AoxI	GGCC	2 cut(s)	81, 257
ApeKI	GCWGC	5 cut(s)	92, 95, 134, 317, 375
ApoI	RAATTY	2 cut(s)	19, 354
AsuHPI	GGTGA	1 cut(s)	131
AsuII	TTCGAA	1 cut(s)	400
AvaI	CYCGRG	1 cut(s)	208
BaeGI	GKGCMC	1 cut(s)	207
BalI	TGGCCA	1 cut(s)	83
Bbv12I	GWGCWC	2 cut(s)	128, 341
BbvI	GCAGC	5 cut(s)	79, 107, 146, 304, 387
BccI	CCATC	2 cut(s)	92, 193
BciT130I	CCWGG	1 cut(s)	38
BfmI	CTRYAG	3 cut(s)	93, 105, 318
BisI	GCNGC	6 cut(s)	93, 96, 135, 260, 318, 376
BlsI	GCNGC	6 cut(s)	94, 97, 136, 261, 319, 377
Bme1390I	CCNGG	1 cut(s)	38
BmeT110I	CYCGRG	1 cut(s)	208
BmrFI	CCNGG	1 cut(s)	38
Bpu14I	TTCGAA	1 cut(s)	400
BsaXI	ACNNNNNCTCC	1 cut(s)	410
Bse1I	ACTGG	1 cut(s)	24
BseBI	CCWGG	1 cut(s)	38
BseGI	GGATG	1 cut(s)	228
BseNI	ACTGG	1 cut(s)	24
BseSI	GKGCMC	1 cut(s)	207
BseX3I	CGGCCG	1 cut(s)	257
BseXI	GCAGC	5 cut(s)	79, 107, 146, 304, 387
BsgI	GTGCAG	1 cut(s)	387
Bsh1285I	CGRYCG	1 cut(s)	260
BshFI	GGCC	2 cut(s)	83, 259
BsiEI	CGRYCG	1 cut(s)	260
BsiHKAI	GWGCWC	2 cut(s)	128, 341
BsiHKCI	CYCGRG	1 cut(s)	208
BsnI	GGCC	2 cut(s)	83, 259
BsoBI	CYCGRG	1 cut(s)	208
Bsp119I	TTCGAA	1 cut(s)	400
Bsp1286I	GDGCHC	3 cut(s)	128, 207, 341
Bsp143I	GATC	1 cut(s)	62
BspACI	CCGC	2 cut(s)	260, 416
BspANI	GGCC	2 cut(s)	83, 259
BspMAI	CTGCAG	2 cut(s)	97, 322
BspT104I	TTCGAA	1 cut(s)	400
BsrI	ACTGG	1 cut(s)	24
BssMI	GATC	1 cut(s)	62
Bst2UI	CCWGG	1 cut(s)	38
Bst4CI	ACNGT	1 cut(s)	106
BstBI	TTCGAA	1 cut(s)	400
BstC8I	GCNNGC	2 cut(s)	322, 407
BstF5I	GGATG	1 cut(s)	228
BstKTI	GATC	1 cut(s)	65
BstMBI	GATC	1 cut(s)	62
BstMCI	CGRYCG	1 cut(s)	260
BstMWI	GCNNNNNNNGC	1 cut(s)	89
BstNI	CCWGG	1 cut(s)	38
BstSCI	CCNGG	1 cut(s)	36
BstSFI	CTRYAG	3 cut(s)	93, 105, 318
BstSLI	GKGCMC	1 cut(s)	207
BstV1I	GCAGC	5 cut(s)	79, 107, 146, 304, 387
BstZI	CGGCCG	1 cut(s)	257
BsuRI	GGCC	2 cut(s)	83, 259
BtsCI	GGATG	1 cut(s)	228
BtsIMutI	CAGTG	1 cut(s)	370
Cac8I	GCNNGC	2 cut(s)	322, 407
Csp6I	GTAC	1 cut(s)	381
CviAII	CATG	2 cut(s)	215, 304
CviJI	RGCY	5 cut(s)	83, 98, 137, 259, 350
CviKI_1	RGCY	5 cut(s)	83, 98, 137, 259, 350
CviQI	GTAC	1 cut(s)	381
DpnI	GATC	1 cut(s)	64
DpnII	GATC	1 cut(s)	62
EaeI	YGGCCR	2 cut(s)	81, 257
EagI	CGGCCG	1 cut(s)	257
EclXI	CGGCCG	1 cut(s)	257
Eco52I	CGGCCG	1 cut(s)	257
Eco57I	CTGAAG	1 cut(s)	282
Eco88I	CYCGRG	1 cut(s)	208
EcoRI	GAATTC	1 cut(s)	19
EcoRII	CCWGG	1 cut(s)	36
FaeI	CATG	2 cut(s)	218, 307
FaiI	YATR	6 cut(s)	147, 159, 161, 216, 231, 305
FatI	CATG	2 cut(s)	214, 303
FblI	GTMKAC	1 cut(s)	167
Fnu4HI	GCNGC	6 cut(s)	93, 96, 135, 260, 318, 376
FokI	GGATG	1 cut(s)	235
Fsp4HI	GCNGC	6 cut(s)	93, 96, 135, 260, 318, 376
GluI	GCNGC	6 cut(s)	93, 96, 135, 260, 318, 376
HaeIII	GGCC	2 cut(s)	83, 259
Hin1II	CATG	2 cut(s)	218, 307
HinfI	GANTC	2 cut(s)	5, 113
HphI	GGTGA	1 cut(s)	131
Hpy166II	GTNNAC	2 cut(s)	168, 383
Hpy188III	TCNNGA	1 cut(s)	275
Hpy8I	GTNNAC	2 cut(s)	168, 383
HpyCH4III	ACNGT	1 cut(s)	106
HpyCH4V	TGCA	4 cut(s)	95, 134, 320, 368
HpyF10VI	GCNNNNNNNGC	1 cut(s)	89
Hsp92II	CATG	2 cut(s)	218, 307
Kzo9I	GATC	1 cut(s)	62
LpnPI	CCDG	9 cut(s)	23, 29, 37, 50, 51, 102, 283, 285, 306
Lsp1109I	GCAGC	5 cut(s)	79, 107, 146, 304, 387
MalI	GATC	1 cut(s)	64
MboI	GATC	1 cut(s)	62
MboII	GAAGA	1 cut(s)	288
MfeI	CAATTG	2 cut(s)	129, 325
MhlI	GDGCHC	3 cut(s)	128, 207, 341
MlsI	TGGCCA	1 cut(s)	83
MluCI	AATT	4 cut(s)	19, 129, 325, 354
MluNI	TGGCCA	1 cut(s)	83
MnlI	CCTC	2 cut(s)	404, 412
Mox20I	TGGCCA	1 cut(s)	83
MscI	TGGCCA	1 cut(s)	83
MseI	TTAA	1 cut(s)	243
MslI	CAYNNNNRTG	1 cut(s)	363
Msp20I	TGGCCA	1 cut(s)	83
MspA1I	CMGCKG	1 cut(s)	350
MspR9I	CCNGG	1 cut(s)	38
MunI	CAATTG	2 cut(s)	129, 325
MvaI	CCWGG	1 cut(s)	38
MwoI	GCNNNNNNNGC	1 cut(s)	89
NdeII	GATC	1 cut(s)	62
NlaIII	CATG	2 cut(s)	218, 307
NspV	TTCGAA	1 cut(s)	400
OliI	CACNNNNGTG	1 cut(s)	363
PcsI	WCGNNNNNNNCGW	1 cut(s)	406
PfeI	GAWTC	2 cut(s)	5, 113
PkrI	GCNGC	6 cut(s)	94, 97, 136, 261, 319, 377
Psp6I	CCWGG	1 cut(s)	36
PspGI	CCWGG	1 cut(s)	36
PstI	CTGCAG	2 cut(s)	97, 322
PvuII	CAGCTG	1 cut(s)	350
RsaI	GTAC	1 cut(s)	382
RsaNI	GTAC	1 cut(s)	381
RseI	CAYNNNNRTG	1 cut(s)	363
SaqAI	TTAA	1 cut(s)	243
SatI	GCNGC	6 cut(s)	93, 96, 135, 260, 318, 376
Sau3AI	GATC	1 cut(s)	62
ScrFI	CCNGG	1 cut(s)	38
SduI	GDGCHC	3 cut(s)	128, 207, 341
SetI	ASST	7 cut(s)	100, 139, 176, 272, 352, 415, 423
SfcI	CTRYAG	3 cut(s)	93, 105, 318
SfuI	TTCGAA	1 cut(s)	400
SmiMI	CAYNNNNRTG	1 cut(s)	363
Sse9I	AATT	4 cut(s)	19, 129, 325, 354
SsiI	CCGC	2 cut(s)	260, 416
StyD4I	CCNGG	1 cut(s)	36
TaaI	ACNGT	1 cut(s)	106
TaqI	TCGA	1 cut(s)	400
TasI	AATT	4 cut(s)	19, 129, 325, 354
TatI	WGTACW	1 cut(s)	380
TauI	GCSGC	1 cut(s)	262
TfiI	GAWTC	2 cut(s)	5, 113
Tru1I	TTAA	1 cut(s)	243
Tru9I	TTAA	1 cut(s)	243
TscAI	CASTG	1 cut(s)	370
TseI	GCWGC	5 cut(s)	92, 95, 134, 317, 375
TspRI	CASTG	1 cut(s)	370
XapI	RAATTY	2 cut(s)	19, 354
XmiI	GTMKAC	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.