Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0008889

Physical Location & Seq

Genomic Coordinates Reverse (-)

3496662 .. 3498563

Gene Structure 1902 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0029600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGAAATTGGTGGAGGCATTATCGGCCACACTTAAAAACAAGGCAATATACTGTGGCCCACTGGTCAAGTCTCTATCAGCAAACATAACAACTGCAATTCGACCCACCTGCTCTCCTGCAAAAGATGGTAATGAACAAGGTAGTGCTTGGATTTTTGTCCTATCCCAAAATCACTCATCAAGGACACCAGCTCAAGAGGAAGAAGGTCAACAGAACAAGAAACGGTTATTGGTGATTGCTCTGATCACAATTCCTATGATTATGATCCTACTGAGAACAATGATGTATTTTCTAAAAAGGAGAGTAGTCAAGTCAATTGGGATTATAGACAACATTAAAAGATCAGTTTATAGGCTATTAAATGTAATTCCAGCTACAGTCAGTTTTAACATCAATGCTCCTAATCTGTCTACAAGTTGGAGAGGGAAGGATGAGACCTGGGTGAGCCAGACAGAATTGTCAGGAAACTGTTGCAGCGTAGGTGGCCTTCTCTCTGTTCAACTGAAGCCCCTCAGTTCGATTCAGAGTTTTCATGCAGATCGAGAAGAAAGACATCCAAGATTTCAGAACCAACCCATCTTTTTGAACGAAGTTTACGAAAGAGCTCTTCAGTTTTATGATAATGTCAAGTTCCACACTGTGGACTATGGTGATCTTTTAAATAATAAAATACTGGAAGTTTCCCTGCAAACCAATGCCTATGATCAAATGGAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC TIR

Protein Analysis

239

Amino Acids

27.07

Weight (kDa)

9.16

Isoelectric Point (pI)

45.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008889)

Species	Orthologous Gene IDs
prunus_persica	Prupe.8G110000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0262301 RchiOBHm_Chr6g0262321
rosa_laevigata	RLG00000014024 RLG00000014034 RLG00000014334 RLG00000014342 RLG00000035301
rosa_multiflora	Rmu_sc0000565.1_g000041 Rmu_sc0002938.1_g000003 Rmu_sc0002938.1_g000011 Rmu_ssc0000388.1_g000023
rosa_roxburghii	Rroxscaffold_7G00201070 Rroxscaffold_7G00201110 Rroxscaffold_7G00204190 Rroxscaffold_7G00204430
rosa_rugosa	Rorug06G0029600 Rorug06G0029800
rosa_samantha	Rh1AG095400 Rh1AG095600 Rh6AG151300 Rh6DG136200
rosa_wichuraiana	Rw6G013100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	116
AasI	GACNNNNNNGTC	1 cut(s)	457
Acc36I	ACCTGC	1 cut(s)	116
AccB7I	CCANNNNNTGG	1 cut(s)	640
AccI	GTMKAC	1 cut(s)	410
AclWI	GGATC	1 cut(s)	259
AcoI	YGGCCR	1 cut(s)	24
AcsI	RAATTY	1 cut(s)	713
AcuI	CTGAAG	2 cut(s)	524, 593
AdeI	CACNNNGTG	1 cut(s)	640
AfiI	CCNNNNNNNGG	1 cut(s)	640
AgsI	TTSAA	2 cut(s)	500, 586
AjnI	CCWGG	1 cut(s)	437
AjuI	GAANNNNNNNTTGG	2 cut(s)	212, 244
AluBI	AGCT	3 cut(s)	191, 374, 605
AluI	AGCT	3 cut(s)	191, 374, 605
Alw21I	GWGCWC	1 cut(s)	607
Alw26I	GTCTC	2 cut(s)	75, 428
AlwI	GGATC	1 cut(s)	259
AoxI	GGCC	3 cut(s)	24, 55, 484
ApeKI	GCWGC	1 cut(s)	474
ApoI	RAATTY	1 cut(s)	713
AspS9I	GGNCC	1 cut(s)	56
AsuHPI	GGTGA	3 cut(s)	244, 454, 662
BanII	GRGCYC	1 cut(s)	607
BarI	GAAGNNNNNNTAC	2 cut(s)	471, 503
Bbv12I	GWGCWC	1 cut(s)	607
BbvI	GCAGC	1 cut(s)	486
BccI	CCATC	2 cut(s)	119, 584
BcgI	CGANNNNNNTGC	2 cut(s)	90, 124
BciT130I	CCWGG	1 cut(s)	439
BclI	TGATCA	2 cut(s)	243, 703
BcoDI	GTCTC	2 cut(s)	75, 428
BfmI	CTRYAG	1 cut(s)	375
BfuAI	ACCTGC	1 cut(s)	116
BisI	GCNGC	1 cut(s)	475
BlsI	GCNGC	1 cut(s)	476
Bme1390I	CCNGG	1 cut(s)	439
BmgT120I	GGNCC	1 cut(s)	56
BmrFI	CCNGG	1 cut(s)	439
BpuEI	CTTGAG	1 cut(s)	177
BsaBI	GATNNNNATC	1 cut(s)	263
BsaI	GGTCTC	1 cut(s)	428
BsaJI	CCNNGG	1 cut(s)	438
BsaXI	ACNNNNNCTCC	2 cut(s)	97, 127
Bsc4I	CCNNNNNNNGG	1 cut(s)	640
Bse1I	ACTGG	2 cut(s)	66, 678
Bse8I	GATNNNNATC	1 cut(s)	263
BseBI	CCWGG	1 cut(s)	439
BseDI	CCNNGG	1 cut(s)	438
BseGI	GGATG	2 cut(s)	436, 553
BseJI	GATNNNNATC	1 cut(s)	263
BseLI	CCNNNNNNNGG	1 cut(s)	640
BseMII	CTCAG	2 cut(s)	263, 526
BseNI	ACTGG	2 cut(s)	66, 678
BseXI	GCAGC	1 cut(s)	486
BshFI	GGCC	3 cut(s)	26, 57, 486
BsiHKAI	GWGCWC	1 cut(s)	607
BslI	CCNNNNNNNGG	1 cut(s)	640
BsmAI	GTCTC	2 cut(s)	75, 428
BsnI	GGCC	3 cut(s)	26, 57, 486
Bso31I	GGTCTC	1 cut(s)	428
Bsp1286I	GDGCHC	1 cut(s)	607
Bsp143I	GATC	6 cut(s)	243, 264, 341, 538, 652, 703
BspANI	GGCC	3 cut(s)	26, 57, 486
BspCNI	CTCAG	2 cut(s)	264, 525
BspMI	ACCTGC	1 cut(s)	116
BspPI	GGATC	1 cut(s)	259
BspQI	GCTCTTC	1 cut(s)	612
BspTNI	GGTCTC	1 cut(s)	428
BsrI	ACTGG	2 cut(s)	66, 678
BssECI	CCNNGG	1 cut(s)	438
BssMI	GATC	6 cut(s)	243, 264, 341, 538, 652, 703
Bst2UI	CCWGG	1 cut(s)	439
Bst4CI	ACNGT	5 cut(s)	53, 225, 379, 470, 640
Bst6I	CTCTTC	1 cut(s)	612
BstDEI	CTNAG	2 cut(s)	272, 512
BstF5I	GGATG	2 cut(s)	436, 553
BstKTI	GATC	6 cut(s)	246, 267, 344, 541, 655, 706
BstMAI	GTCTC	2 cut(s)	75, 428
BstMBI	GATC	6 cut(s)	243, 264, 341, 538, 652, 703
BstMWI	GCNNNNNNNGC	2 cut(s)	23, 483
BstNI	CCWGG	1 cut(s)	439
BstSCI	CCNGG	1 cut(s)	437
BstSFI	CTRYAG	1 cut(s)	375
BstV1I	GCAGC	1 cut(s)	486
BsuRI	GGCC	3 cut(s)	26, 57, 486
BtsCI	GGATG	2 cut(s)	436, 553
BtsIMutI	CAGTG	2 cut(s)	59, 636
BveI	ACCTGC	1 cut(s)	116
Cfr13I	GGNCC	1 cut(s)	56
CviAII	CATG	1 cut(s)	533
CviJI	RGCY	9 cut(s)	26, 57, 191, 355, 374, 447, 486, 508, 605
CviKI_1	RGCY	9 cut(s)	26, 57, 191, 355, 374, 447, 486, 508, 605
DdeI	CTNAG	2 cut(s)	272, 512
DpnI	GATC	6 cut(s)	245, 266, 343, 540, 654, 705
DpnII	GATC	6 cut(s)	243, 264, 341, 538, 652, 703
DraI	TTTAAA	1 cut(s)	660
DraIII	CACNNNGTG	1 cut(s)	640
DrdI	GACNNNNNNGTC	1 cut(s)	457
DseDI	GACNNNNNNGTC	1 cut(s)	457
EaeI	YGGCCR	1 cut(s)	24
Eam1104I	CTCTTC	1 cut(s)	612
EarI	CTCTTC	1 cut(s)	612
Ecl136II	GAGCTC	1 cut(s)	605
Eco24I	GRGCYC	1 cut(s)	607
Eco31I	GGTCTC	1 cut(s)	428
Eco53kI	GAGCTC	1 cut(s)	605
Eco57I	CTGAAG	2 cut(s)	524, 593
EcoICRI	GAGCTC	1 cut(s)	605
EcoRII	CCWGG	1 cut(s)	437
EcoT38I	GRGCYC	1 cut(s)	607
FaeI	CATG	1 cut(s)	536
FatI	CATG	1 cut(s)	532
FbaI	TGATCA	2 cut(s)	243, 703
FblI	GTMKAC	1 cut(s)	410
Fnu4HI	GCNGC	1 cut(s)	475
FokI	GGATG	2 cut(s)	443, 540
FriOI	GRGCYC	1 cut(s)	607
Fsp4HI	GCNGC	1 cut(s)	475
GluI	GCNGC	1 cut(s)	475
HaeIII	GGCC	3 cut(s)	26, 57, 486
Hin1II	CATG	1 cut(s)	536
HincII	GTYRAC	1 cut(s)	209
HindII	GTYRAC	1 cut(s)	209
HinfI	GANTC	1 cut(s)	520
HphI	GGTGA	3 cut(s)	244, 454, 662
Hpy166II	GTNNAC	4 cut(s)	209, 411, 595, 643
Hpy188I	TCNGA	3 cut(s)	243, 525, 567
Hpy188III	TCNNGA	3 cut(s)	194, 462, 542
Hpy8I	GTNNAC	4 cut(s)	209, 411, 595, 643
HpyAV	CCTTC	3 cut(s)	197, 421, 497
HpyCH4III	ACNGT	5 cut(s)	53, 225, 379, 470, 640
HpyCH4V	TGCA	5 cut(s)	95, 119, 474, 536, 688
HpyF10VI	GCNNNNNNNGC	2 cut(s)	23, 483
HpyF3I	CTNAG	2 cut(s)	272, 512
Hsp92II	CATG	1 cut(s)	536
Ksp22I	TGATCA	2 cut(s)	243, 703
Kzo9I	GATC	6 cut(s)	243, 264, 341, 538, 652, 703
LguI	GCTCTTC	1 cut(s)	612
LmnI	GCTCC	1 cut(s)	403
Lsp1109I	GCAGC	1 cut(s)	486
MalI	GATC	6 cut(s)	245, 266, 343, 540, 654, 705
MboI	GATC	6 cut(s)	243, 264, 341, 538, 652, 703
MboII	GAAGA	3 cut(s)	212, 557, 599
MfeI	CAATTG	1 cut(s)	315
MhlI	GDGCHC	1 cut(s)	607
MluCI	AATT	7 cut(s)	5, 96, 249, 315, 366, 455, 713
MmeI	TCCRAC	1 cut(s)	398
MnlI	CCTC	4 cut(s)	7, 190, 416, 521
MseI	TTAA	5 cut(s)	33, 336, 359, 387, 659
MspR9I	CCNGG	1 cut(s)	439
MunI	CAATTG	1 cut(s)	315
MvaI	CCWGG	1 cut(s)	439
MwoI	GCNNNNNNNGC	2 cut(s)	23, 483
NdeII	GATC	6 cut(s)	243, 264, 341, 538, 652, 703
NlaIII	CATG	1 cut(s)	536
PaqCI	CACCTGC	1 cut(s)	116
PciSI	GCTCTTC	1 cut(s)	612
PcsI	WCGNNNNNNNCGW	1 cut(s)	594
PfeI	GAWTC	1 cut(s)	520
PflMI	CCANNNNNTGG	1 cut(s)	640
PkrI	GCNGC	1 cut(s)	476
Psp124BI	GAGCTC	1 cut(s)	607
Psp6I	CCWGG	1 cut(s)	437
PspGI	CCWGG	1 cut(s)	437
PspPI	GGNCC	1 cut(s)	56
PsrI	GAACNNNNNNTAC	2 cut(s)	578, 610
SacI	GAGCTC	1 cut(s)	607
SapI	GCTCTTC	1 cut(s)	612
SaqAI	TTAA	5 cut(s)	33, 336, 359, 387, 659
SatI	GCNGC	1 cut(s)	475
Sau3AI	GATC	6 cut(s)	243, 264, 341, 538, 652, 703
Sau96I	GGNCC	1 cut(s)	56
ScrFI	CCNGG	1 cut(s)	439
SduI	GDGCHC	1 cut(s)	607
SetI	ASST	8 cut(s)	110, 142, 193, 208, 376, 440, 484, 607
SfcI	CTRYAG	1 cut(s)	375
SmlI	CTYRAG	1 cut(s)	192
SmoI	CTYRAG	1 cut(s)	192
Sse9I	AATT	7 cut(s)	5, 96, 249, 315, 366, 455, 713
SstI	GAGCTC	1 cut(s)	607
StyD4I	CCNGG	1 cut(s)	437
TaaI	ACNGT	5 cut(s)	53, 225, 379, 470, 640
TaqI	TCGA	3 cut(s)	100, 518, 541
TasI	AATT	7 cut(s)	5, 96, 249, 315, 366, 455, 713
TfiI	GAWTC	1 cut(s)	520
Tru1I	TTAA	5 cut(s)	33, 336, 359, 387, 659
Tru9I	TTAA	5 cut(s)	33, 336, 359, 387, 659
TscAI	CASTG	2 cut(s)	66, 643
TseI	GCWGC	1 cut(s)	474
TspDTI	ATGAA	3 cut(s)	17, 147, 521
TspRI	CASTG	2 cut(s)	66, 643
Van91I	CCANNNNNTGG	1 cut(s)	640
XapI	RAATTY	1 cut(s)	713
XmiI	GTMKAC	1 cut(s)	410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.