Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0008889

Physical Location & Seq

Genomic Coordinates Forward (+)

45999130 .. 46001076

Gene Structure 1947 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014034

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1293 bp

ATGGCTAAAGAGATAGTTCACATTGAGTCACCAAAGAACCCCGCTAGACGTAGCCGATTGTGGTTTTCTGATGATGTTTACGATGTTCTCACAAGATGCACTGGAACAGACAATATCAAAGGCGTCACGAGTTGCAGTAACCTGAAATATATAAACTTGGAAAGCTGCCACTTCCTTACTAGAATTCCCGACTTGTCAGGATCTCCAAATTTAAAGGAGCTGAATCTTAACAATTGTACAAGCTTAGTTGAGGTTGATCAGTCTGTTGGACTTCTTGATAAGCTTGTTATTTTGAGTCTTTCTGGATGTGACAGGCTCACTAGGTTTCCAAGAAGAATCTCCTTGATTTCAGTAAAATATATCAATCTGGGGGGTTGCAGATTGCTCGAGACATTCTGCGACATTCTGGAAAATGTGGTATCCTTGACAAGGCTGGATCTATGCGGCACGGCCATTGAAGAATTGCCTGAAACAGTTATATATCTAGTCAGCCTGAAGCATTTAATTCTAAGAGAATGTGATAAGCTTATCCATCTACCACATAGCATTTATGATCTGCATAGTTTATCACGTCTTGATCTGCAGAACTGCTCAAAGCTTGTTACGTTTCCAAGGTGGAATGATGAGCAGTCAGTTTCGACTAACTTGAGGTTTCTTGACCTGCGTGGTTGCACAGAGCTTCCAGAAATTCCTGAACTTCCACGGAGCGTGGAATGGATAAATGCCGATGGCTGTAATAAGAGCAGTCTCTTCTCTCTTATTCACTTGGCTAAGCAGTCTGAATTTGAGATTGTATTTCCAGCAAGTGAAGTTCCTAGTTGGTTCAGGAATCGCAAGTATTTAATGGAGCTTTTTGATGAATGTGAATTTTCTTTTGAAATTCCTTTAAATTTCAACAAAGGATTGGCTATCTGTGCTTCAGCAACTGCTGTGGGTAATCTTGATCAGTGCTCTTTCACAGCCAGTATTCACATCAATGGAGAAAGCAGATGTACTTTTTCATTTTGTTTCGAAGCAAGCAAGATGAAGGACTCTGCTCATGTATGGCTGCTCTATATTCCATTTGTTAAGTTTGCGTTTCATGAGCCACCTTATAGCTGCCTAGTTAATTTGAAACATACTAGTAAAGATTCGGTGCGCTCCAGAAGCTATGGGGTTCACCTGGTAATGGTACAGGATGAATATGAAGATTTCGTAGATGACAGCGACTTGGAAGATGAGTACTCAGCTGGTGAAAATGATGAAGACATGATAGATCAAATTGAGGATGGTGAAGACGTGGAAAAAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC TIR

Protein Analysis

431

Amino Acids

48.97

Weight (kDa)

4.9

Isoelectric Point (pI)

59.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	118 - 199	2e-06	Leucine-rich repeat region
LRR_8	PF13855	141 - 197	6.6e-06	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008889)

Species	Orthologous Gene IDs
prunus_persica	Prupe.8G110000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0262301 RchiOBHm_Chr6g0262321
rosa_laevigata	RLG00000014024 RLG00000014034 RLG00000014334 RLG00000014342 RLG00000035301
rosa_multiflora	Rmu_sc0000565.1_g000041 Rmu_sc0002938.1_g000003 Rmu_sc0002938.1_g000011 Rmu_ssc0000388.1_g000023
rosa_roxburghii	Rroxscaffold_7G00201070 Rroxscaffold_7G00201110 Rroxscaffold_7G00204190 Rroxscaffold_7G00204430
rosa_rugosa	Rorug06G0029600 Rorug06G0029800
rosa_samantha	Rh1AG095400 Rh1AG095600 Rh6AG151300 Rh6DG136200
rosa_wichuraiana	Rw6G013100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	669
AciI	CCGC	2 cut(s)	42, 444
AclWI	GGATC	2 cut(s)	208, 444
AcoI	YGGCCR	1 cut(s)	450
AcsI	RAATTY	7 cut(s)	183, 208, 687, 782, 866, 879, 889
AcuI	CTGAAG	2 cut(s)	515, 903
AcyI	GRCGYC	1 cut(s)	123
AfaI	GTAC	4 cut(s)	238, 994, 1173, 1223
AfiI	CCNNNNNNNGG	2 cut(s)	429, 1168
AgsI	TTSAA	4 cut(s)	458, 878, 895, 1114
AhlI	ACTAGT	1 cut(s)	1121
AjiI	CACGTC	2 cut(s)	572, 1279
AjnI	CCWGG	1 cut(s)	1161
Alw21I	GWGCWC	1 cut(s)	953
Alw26I	GTCTC	2 cut(s)	383, 752
AlwI	GGATC	2 cut(s)	208, 444
AlwNI	CAGNNNCTG	1 cut(s)	926
Ama87I	CYCGRG	1 cut(s)	386
AoxI	GGCC	1 cut(s)	450
ApeKI	GCWGC	3 cut(s)	165, 1048, 1098
ApoI	RAATTY	7 cut(s)	183, 208, 687, 782, 866, 879, 889
AspLEI	GCGC	1 cut(s)	1140
AsuHPI	GGTGA	4 cut(s)	21, 1151, 1244, 1283
AsuII	TTCGAA	1 cut(s)	1011
AvaI	CYCGRG	1 cut(s)	386
BauI	CACGAG	1 cut(s)	127
BbsI	GAAGAC	2 cut(s)	1251, 1281
Bbv12I	GWGCWC	1 cut(s)	953
BbvI	GCAGC	3 cut(s)	152, 1035, 1085
BccI	CCATC	3 cut(s)	540, 722, 1262
BceAI	ACGGC	1 cut(s)	465
BcgI	CGANNNNNNTGC	2 cut(s)	367, 401
BciT130I	CCWGG	1 cut(s)	1163
BciVI	GTATCC	1 cut(s)	430
BclI	TGATCA	2 cut(s)	256, 943
BcoDI	GTCTC	2 cut(s)	383, 752
BcuI	ACTAGT	1 cut(s)	1121
BfaI	CTAG	7 cut(s)	45, 180, 321, 485, 816, 1103, 1122
BfmI	CTRYAG	1 cut(s)	581
BfuAI	ACCTGC	1 cut(s)	669
BfuI	GTATCC	1 cut(s)	430
BisI	GCNGC	4 cut(s)	166, 445, 1049, 1099
BlpI	GCTNAGC	1 cut(s)	771
BlsI	GCNGC	4 cut(s)	167, 446, 1050, 1100
BmcAI	AGTACT	1 cut(s)	1223
Bme1390I	CCNGG	1 cut(s)	1163
BmeT110I	CYCGRG	1 cut(s)	386
BmgBI	CACGTC	2 cut(s)	572, 1279
BmrFI	CCNGG	1 cut(s)	1163
BmsI	GCATC	1 cut(s)	86
BpiI	GAAGAC	2 cut(s)	1251, 1281
BpmI	CTGGAG	1 cut(s)	1126
Bpu1102I	GCTNAGC	1 cut(s)	771
Bpu14I	TTCGAA	1 cut(s)	1011
BpuEI	CTTGAG	1 cut(s)	667
BsaHI	GRCGYC	1 cut(s)	123
BsaJI	CCNNGG	2 cut(s)	611, 701
Bsc4I	CCNNNNNNNGG	2 cut(s)	429, 1168
Bse1I	ACTGG	2 cut(s)	106, 963
BseBI	CCWGG	1 cut(s)	1163
BseDI	CCNNGG	2 cut(s)	611, 701
BseGI	GGATG	3 cut(s)	311, 1183, 1273
BseLI	CCNNNNNNNGG	2 cut(s)	429, 1168
BseMII	CTCAG	1 cut(s)	1239
BseNI	ACTGG	2 cut(s)	106, 963
BseXI	GCAGC	3 cut(s)	152, 1035, 1085
BshFI	GGCC	1 cut(s)	452
BsiHKAI	GWGCWC	1 cut(s)	953
BsiHKCI	CYCGRG	1 cut(s)	386
BslI	CCNNNNNNNGG	2 cut(s)	429, 1168
BsmAI	GTCTC	2 cut(s)	383, 752
BsnI	GGCC	1 cut(s)	452
BsoBI	CYCGRG	1 cut(s)	386
Bsp119I	TTCGAA	1 cut(s)	1011
Bsp1286I	GDGCHC	1 cut(s)	953
Bsp1407I	TGTACA	1 cut(s)	236
Bsp143I	GATC	7 cut(s)	200, 256, 436, 553, 577, 943, 1255
Bsp1720I	GCTNAGC	1 cut(s)	771
BspACI	CCGC	2 cut(s)	42, 444
BspANI	GGCC	1 cut(s)	452
BspCNI	CTCAG	1 cut(s)	1238
BspHI	TCATGA	1 cut(s)	1081
BspMAI	CTGCAG	1 cut(s)	585
BspMI	ACCTGC	1 cut(s)	669
BspPI	GGATC	2 cut(s)	208, 444
BspT104I	TTCGAA	1 cut(s)	1011
BsrGI	TGTACA	1 cut(s)	236
BsrI	ACTGG	2 cut(s)	106, 963
BssECI	CCNNGG	2 cut(s)	611, 701
BssMI	GATC	7 cut(s)	200, 256, 436, 553, 577, 943, 1255
BssNI	GRCGYC	1 cut(s)	123
BssSI	CACGAG	1 cut(s)	127
BssT1I	CCWWGG	1 cut(s)	611
Bst2BI	CACGAG	1 cut(s)	127
Bst2UI	CCWGG	1 cut(s)	1163
Bst4CI	ACNGT	1 cut(s)	475
Bst6I	CTCTTC	1 cut(s)	755
BstACI	GRCGYC	1 cut(s)	123
BstAUI	TGTACA	1 cut(s)	236
BstBI	TTCGAA	1 cut(s)	1011
BstC8I	GCNNGC	1 cut(s)	1018
BstDEI	CTNAG	4 cut(s)	244, 509, 771, 1225
BstDSI	CCRYGG	1 cut(s)	701
BstENI	CCTNNNNNAGG	1 cut(s)	427
BstF5I	GGATG	3 cut(s)	311, 1183, 1273
BstHHI	GCGC	1 cut(s)	1140
BstKTI	GATC	7 cut(s)	203, 259, 439, 556, 580, 946, 1258
BstMAI	GTCTC	2 cut(s)	383, 752
BstMBI	GATC	7 cut(s)	200, 256, 436, 553, 577, 943, 1255
BstMWI	GCNNNNNNNGC	2 cut(s)	914, 1146
BstNI	CCWGG	1 cut(s)	1163
BstSCI	CCNGG	1 cut(s)	1161
BstSFI	CTRYAG	1 cut(s)	581
BstV1I	GCAGC	3 cut(s)	152, 1035, 1085
BstV2I	GAAGAC	2 cut(s)	1251, 1281
BstX2I	RGATCY	2 cut(s)	200, 436
BstYI	RGATCY	2 cut(s)	200, 436
BsuI	GTATCC	1 cut(s)	430
BsuRI	GGCC	1 cut(s)	452
BtgI	CCRYGG	1 cut(s)	701
BtrI	CACGTC	2 cut(s)	572, 1279
BtsCI	GGATG	3 cut(s)	311, 1183, 1273
BtsIMutI	CAGTG	2 cut(s)	99, 953
BveI	ACCTGC	1 cut(s)	669
Cac8I	GCNNGC	1 cut(s)	1018
CaiI	CAGNNNCTG	1 cut(s)	926
CciI	TCATGA	1 cut(s)	1081
CfoI	GCGC	1 cut(s)	1140
CseI	GACGC	1 cut(s)	112
CsiI	ACCWGGT	1 cut(s)	1161
Csp6I	GTAC	4 cut(s)	237, 993, 1172, 1222
CspCI	CAANNNNNGTGG	2 cut(s)	912, 947
CviAII	CATG	3 cut(s)	1040, 1082, 1249
CviQI	GTAC	4 cut(s)	237, 993, 1172, 1222
DdeI	CTNAG	4 cut(s)	244, 509, 771, 1225
DpnI	GATC	7 cut(s)	202, 258, 438, 555, 579, 945, 1257
DpnII	GATC	7 cut(s)	200, 256, 436, 553, 577, 943, 1255
DraI	TTTAAA	2 cut(s)	213, 888
EaeI	YGGCCR	1 cut(s)	450
Eam1104I	CTCTTC	1 cut(s)	755
EarI	CTCTTC	1 cut(s)	755
Eco130I	CCWWGG	1 cut(s)	611
Eco57I	CTGAAG	2 cut(s)	515, 903
Eco88I	CYCGRG	1 cut(s)	386
EcoNI	CCTNNNNNAGG	1 cut(s)	427
EcoRI	GAATTC	1 cut(s)	183
EcoRII	CCWGG	1 cut(s)	1161
EcoT14I	CCWWGG	1 cut(s)	611
ErhI	CCWWGG	1 cut(s)	611
FaeI	CATG	3 cut(s)	1043, 1085, 1252
FatI	CATG	3 cut(s)	1039, 1081, 1248
FauI	CCCGC	1 cut(s)	49
FbaI	TGATCA	2 cut(s)	256, 943
Fnu4HI	GCNGC	4 cut(s)	166, 445, 1049, 1099
FokI	GGATG	3 cut(s)	318, 1190, 1280
Fsp4HI	GCNGC	4 cut(s)	166, 445, 1049, 1099
FspBI	CTAG	7 cut(s)	45, 180, 321, 485, 816, 1103, 1122
GlaI	GCGC	1 cut(s)	1139
GluI	GCNGC	4 cut(s)	166, 445, 1049, 1099
GsuI	CTGGAG	1 cut(s)	1126
HaeIII	GGCC	1 cut(s)	452
HgaI	GACGC	1 cut(s)	112
HhaI	GCGC	1 cut(s)	1140
Hin1I	GRCGYC	1 cut(s)	123
Hin1II	CATG	3 cut(s)	1043, 1085, 1252
Hin6I	GCGC	1 cut(s)	1138
HinP1I	GCGC	1 cut(s)	1138
HindIII	AAGCTT	4 cut(s)	241, 281, 524, 596
HinfI	GANTC	7 cut(s)	26, 223, 295, 336, 829, 1031, 1130
HphI	GGTGA	4 cut(s)	21, 1151, 1244, 1283
Hpy166II	GTNNAC	3 cut(s)	19, 79, 1159
Hpy188I	TCNGA	3 cut(s)	70, 781, 1292
Hpy8I	GTNNAC	3 cut(s)	19, 79, 1159
HpyAV	CCTTC	1 cut(s)	1021
HpyCH4III	ACNGT	1 cut(s)	475
HpyCH4IV	ACGT	4 cut(s)	49, 571, 605, 1278
HpyCH4V	TGCA	6 cut(s)	99, 135, 378, 559, 583, 672
HpyF10VI	GCNNNNNNNGC	2 cut(s)	914, 1146
HpyF3I	CTNAG	4 cut(s)	244, 509, 771, 1225
HpySE526I	ACGT	4 cut(s)	49, 571, 605, 1278
Hsp92I	GRCGYC	1 cut(s)	123
Hsp92II	CATG	3 cut(s)	1043, 1085, 1252
HspAI	GCGC	1 cut(s)	1138
Ksp22I	TGATCA	2 cut(s)	256, 943
Kzo9I	GATC	7 cut(s)	200, 256, 436, 553, 577, 943, 1255
LmnI	GCTCC	4 cut(s)	217, 705, 847, 1145
Lsp1109I	GCAGC	3 cut(s)	152, 1035, 1085
LweI	GCATC	1 cut(s)	86
MabI	ACCWGGT	1 cut(s)	1161
MaeI	CTAG	7 cut(s)	45, 180, 321, 485, 816, 1103, 1122
MaeII	ACGT	4 cut(s)	49, 571, 605, 1278
MaeIII	GTNAC	5 cut(s)	27, 124, 137, 308, 601
MalI	GATC	7 cut(s)	202, 258, 438, 555, 579, 945, 1257
MboI	GATC	7 cut(s)	200, 256, 436, 553, 577, 943, 1255
MboII	GAAGA	7 cut(s)	345, 470, 742, 1199, 1226, 1256, 1286
MfeI	CAATTG	1 cut(s)	232
MflI	RGATCY	2 cut(s)	200, 436
MhlI	GDGCHC	1 cut(s)	953
MlyI	GAGTC	3 cut(s)	35, 304, 1025
MmeI	TCCRAC	1 cut(s)	247
MnlI	CCTC	3 cut(s)	244, 642, 1258
MseI	TTAA	7 cut(s)	212, 228, 503, 842, 887, 1068, 1107
MslI	CAYNNNNRTG	1 cut(s)	975
MspA1I	CMGCKG	1 cut(s)	1229
MspR9I	CCNGG	1 cut(s)	1163
MunI	CAATTG	1 cut(s)	232
MvaI	CCWGG	1 cut(s)	1163
MwoI	GCNNNNNNNGC	2 cut(s)	914, 1146
NdeII	GATC	7 cut(s)	200, 256, 436, 553, 577, 943, 1255
NlaIII	CATG	3 cut(s)	1043, 1085, 1252
NmuCI	GTSAC	3 cut(s)	27, 124, 308
NspV	TTCGAA	1 cut(s)	1011
PaeR7I	CTCGAG	1 cut(s)	386
PagI	TCATGA	1 cut(s)	1081
PfeI	GAWTC	4 cut(s)	223, 336, 829, 1130
PkrI	GCNGC	4 cut(s)	167, 446, 1050, 1100
PleI	GAGTC	3 cut(s)	34, 303, 1025
PpsI	GAGTC	3 cut(s)	34, 303, 1025
Psp6I	CCWGG	1 cut(s)	1161
PspGI	CCWGG	1 cut(s)	1161
PstI	CTGCAG	1 cut(s)	585
PstNI	CAGNNNCTG	1 cut(s)	926
PsuI	RGATCY	2 cut(s)	200, 436
PvuII	CAGCTG	1 cut(s)	1229
RsaI	GTAC	4 cut(s)	238, 994, 1173, 1223
RsaNI	GTAC	4 cut(s)	237, 993, 1172, 1222
RseI	CAYNNNNRTG	1 cut(s)	975
SaqAI	TTAA	7 cut(s)	212, 228, 503, 842, 887, 1068, 1107
SatI	GCNGC	4 cut(s)	166, 445, 1049, 1099
Sau3AI	GATC	7 cut(s)	200, 256, 436, 553, 577, 943, 1255
ScaI	AGTACT	1 cut(s)	1223
SchI	GAGTC	3 cut(s)	35, 304, 1025
ScrFI	CCNGG	1 cut(s)	1163
SduI	GDGCHC	1 cut(s)	953
SexAI	ACCWGGT	1 cut(s)	1161
SfaNI	GCATC	1 cut(s)	86
SfcI	CTRYAG	1 cut(s)	581
Sfr274I	CTCGAG	1 cut(s)	386
SfuI	TTCGAA	1 cut(s)	1011
SlaI	CTCGAG	1 cut(s)	386
SmiMI	CAYNNNNRTG	1 cut(s)	975
SmlI	CTYRAG	2 cut(s)	386, 646
SmoI	CTYRAG	2 cut(s)	386, 646
SpeI	ACTAGT	1 cut(s)	1121
SsiI	CCGC	2 cut(s)	42, 444
SspMI	CTAG	7 cut(s)	45, 180, 321, 485, 816, 1103, 1122
StyD4I	CCNGG	1 cut(s)	1161
StyI	CCWWGG	1 cut(s)	611
TaaI	ACNGT	1 cut(s)	475
TaiI	ACGT	4 cut(s)	52, 574, 608, 1281
TaqI	TCGA	3 cut(s)	387, 638, 1011
TatI	WGTACW	3 cut(s)	236, 992, 1221
TauI	GCSGC	1 cut(s)	447
TfiI	GAWTC	4 cut(s)	223, 336, 829, 1130
Tru1I	TTAA	7 cut(s)	212, 228, 503, 842, 887, 1068, 1107
Tru9I	TTAA	7 cut(s)	212, 228, 503, 842, 887, 1068, 1107
TscAI	CASTG	2 cut(s)	106, 953
TseFI	GTSAC	3 cut(s)	27, 124, 308
TseI	GCWGC	3 cut(s)	165, 1048, 1098
Tsp45I	GTSAC	3 cut(s)	27, 124, 308
TspDTI	ATGAA	7 cut(s)	873, 990, 1040, 1070, 1194, 1200, 1257
TspGWI	ACGGA	1 cut(s)	718
TspRI	CASTG	2 cut(s)	106, 953
XagI	CCTNNNNNAGG	1 cut(s)	427
XapI	RAATTY	7 cut(s)	183, 208, 687, 782, 866, 879, 889
XhoI	CTCGAG	1 cut(s)	386
XspI	CTAG	7 cut(s)	45, 180, 321, 485, 816, 1103, 1122
ZrmI	AGTACT	1 cut(s)	1223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.