Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008889

Physical Location & Seq

Genomic Coordinates Forward (+)

17017115 .. 17018820

Gene Structure 1706 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23524

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1344 bp

ATGCCACACATACTTTGTTTTTGTTTTTGCTCACAGCACTCCAAAAGCCTGAAATATATAAATTTGGAAAGCTGCCCTTTGCTGACAGAAATCCCTGACTTCTCTGGACTCTCAAATTTAAAGGACTTAAATCTGAACGAATGTTCAAGTTTAGTTCAGGTTGGTGCTTCTGTTGGTGTCCTTGATCAGCTGCTTGGCTTGAGTCTTTCGGGTTGCAATAATCTTACTTCATTTCCGAGAGAAATCGCCTTGAAATCTGTGGAATATATAAATCTTAGAGGTTGCAGAATGCTCCAGACTTTCCCTGAAATTGTGGCAAAGATGGGTTTCTTGACAAGCTTGGATCTATCTGGCACTGCCATAAAGGAATTGCCTTCATCTATTGCATATCTCAGTAGCCTCGAAGAGTTGACAATTAGAGAATGTGAAAACCTTACAGACCTGTCATACAGCATATTTGAGTTGCAGCATCTTTGGTGTCTTGATCTCCAAGGCTGCTCAAAACTTGTTAAAATCCCAAAGTGGAGTGCAGAGTCGGTTACAACGAAGTCACCTGACTTGTGTTATCTTAACTTGCGAGGGTGCAACAGGCTTCAAGAAATTCCTGAACTTCCACCGAAAGTCAATCTGGTAAACGCGGCTGATTGCACATTACTTGAACGATTTGCAAAATTGTCAAACATCTTGGAACGTAAGGAGTCACAAATGATGAAATGCATCACATTGTTTAATTGTCAGAAACTGTGTGTAAGTCTTACTCATGGCGTGACAGAGATTGAACATATCTTACTGGATGAAACATGCTCTCTCTTTCTCTCTTGTATGCAATCTGAATTCCATGTTGTCTTTCCCGGACGTGAAGTTCCAAAGTGGTTTGACCACCGTGAAGATCTGAAGGAGCTAGGTAATACATCTGAATTTTCTTTTGAAATCCCTCCAAATTTCAAACAGGAAAACAAAGGATTGGCTATCTGTACTGCAGCAGCAACTGTTGAAGAAATTAACTCAGAAGAAGAATTCCCGCAAAATAATTGCTCATTCACAGTCAGAATTGACATTGATGCAGAGAGCAGTGTTGAGCGGTCTTTTAATTTTGAAGCAAAAGACATGCAGTCAGCTCATGTGTGGTTGCTCTATATTCCATTCATCAAGTTTGCCTATTGCAAATCCCCGCCTTTTGCTTGTCGAGTTAGATTGGGTCATACTAGCCAAGGTTCGGTGCGCTGTAAAAGCTACGGTGTCCACCTGGTAATTCCAGAAGCTGAATCTGAAGACGAAGATGATTACAGGATGGATGAGCACCCTTCTATTGTAGATGATGAAAGTGGTGAAGACATAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC TIR

Protein Analysis

447

Amino Acids

50.4

Weight (kDa)

4.9

Isoelectric Point (pI)

49.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_13	PF23286	84 - 170	1.4e-08	Disease resistance protein RPS4B-like, leucine-rich repeats
LRR_14	PF23598	88 - 168	3.7e-09	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008889)

Species	Orthologous Gene IDs
prunus_persica	Prupe.8G110000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0262301 RchiOBHm_Chr6g0262321
rosa_laevigata	RLG00000014024 RLG00000014034 RLG00000014334 RLG00000014342 RLG00000035301
rosa_multiflora	Rmu_sc0000565.1_g000041 Rmu_sc0002938.1_g000003 Rmu_sc0002938.1_g000011 Rmu_ssc0000388.1_g000023
rosa_roxburghii	Rroxscaffold_7G00201070 Rroxscaffold_7G00201110 Rroxscaffold_7G00204190 Rroxscaffold_7G00204430
rosa_rugosa	Rorug06G0029600 Rorug06G0029800
rosa_samantha	Rh1AG095400 Rh1AG095600 Rh6AG151300 Rh6DG136200
rosa_wichuraiana	Rw6G013100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	1081
AccII	CGCG	1 cut(s)	638
AciI	CCGC	4 cut(s)	638, 1022, 1081, 1172
AclWI	GGATC	1 cut(s)	351
AcsI	RAATTY	7 cut(s)	61, 115, 600, 833, 917, 940, 1016
AcuI	CTGAAG	2 cut(s)	914, 1290
AfaI	GTAC	1 cut(s)	976
AfiI	CCNNNNNNNGG	1 cut(s)	1216
AgsI	TTSAA	9 cut(s)	147, 253, 596, 659, 779, 929, 946, 995, 1097
AhdI	GACNNNNNGTC	1 cut(s)	1111
AjiI	CACGTC	1 cut(s)	857
AjnI	CCWGG	1 cut(s)	1245
AloI	GAACNNNNNNTCC	2 cut(s)	846, 878
AluBI	AGCT	7 cut(s)	72, 190, 339, 901, 1118, 1233, 1262
AluI	AGCT	7 cut(s)	72, 190, 339, 901, 1118, 1233, 1262
Alw21I	GWGCWC	1 cut(s)	1302
AlwI	GGATC	1 cut(s)	351
AlwNI	CAGNNNCTG	3 cut(s)	742, 989, 1262
ApeKI	GCWGC	6 cut(s)	72, 190, 466, 495, 980, 983
ApoI	RAATTY	7 cut(s)	61, 115, 600, 833, 917, 940, 1016
AspLEI	GCGC	1 cut(s)	1224
AsuC2I	CCSGG	1 cut(s)	852
AsuHPI	GGTGA	2 cut(s)	543, 1340
BbsI	GAAGAC	2 cut(s)	1278, 1338
Bbv12I	GWGCWC	1 cut(s)	1302
BbvI	GCAGC	6 cut(s)	59, 177, 478, 482, 992, 995
BccI	CCATC	2 cut(s)	316, 1285
BciT130I	CCWGG	1 cut(s)	1247
BclI	TGATCA	1 cut(s)	184
BcnI	CCSGG	1 cut(s)	852
BfaI	CTAG	2 cut(s)	902, 1206
BfmI	CTRYAG	1 cut(s)	978
BglII	AGATCT	1 cut(s)	889
BisI	GCNGC	7 cut(s)	73, 191, 467, 496, 639, 981, 984
BlsI	GCNGC	7 cut(s)	74, 192, 468, 497, 640, 982, 985
Bme1390I	CCNGG	2 cut(s)	852, 1247
BmeRI	GACNNNNNGTC	1 cut(s)	1111
BmgBI	CACGTC	1 cut(s)	857
BmrFI	CCNGG	2 cut(s)	852, 1247
BmsI	GCATC	3 cut(s)	478, 726, 1051
BpiI	GAAGAC	2 cut(s)	1278, 1338
BpmI	CTGGAG	1 cut(s)	278
BpuEI	CTTGAG	1 cut(s)	220
BpuMI	CCSGG	1 cut(s)	852
BsaJI	CCNNGG	2 cut(s)	490, 1210
Bsc4I	CCNNNNNNNGG	1 cut(s)	1216
Bse1I	ACTGG	1 cut(s)	795
BseBI	CCWGG	1 cut(s)	1247
BseDI	CCNNGG	2 cut(s)	490, 1210
BseGI	GGATG	3 cut(s)	799, 1296, 1300
BseLI	CCNNNNNNNGG	1 cut(s)	1216
BseMII	CTCAG	2 cut(s)	406, 1020
BseNI	ACTGG	1 cut(s)	795
BseXI	GCAGC	6 cut(s)	59, 177, 478, 482, 992, 995
BsgI	GTGCAG	1 cut(s)	549
Bsh1236I	CGCG	1 cut(s)	638
BsiHKAI	GWGCWC	1 cut(s)	1302
BsiSI	CCGG	1 cut(s)	852
BslI	CCNNNNNNNGG	1 cut(s)	1216
BsmI	GAATGC	1 cut(s)	294
Bsp1286I	GDGCHC	1 cut(s)	1302
Bsp143I	GATC	4 cut(s)	184, 343, 484, 889
BspACI	CCGC	4 cut(s)	638, 1022, 1081, 1172
BspCNI	CTCAG	2 cut(s)	405, 1019
BspFNI	CGCG	1 cut(s)	638
BspMAI	CTGCAG	1 cut(s)	982
BspPI	GGATC	1 cut(s)	351
BsrBI	CCGCTC	1 cut(s)	1081
BsrI	ACTGG	1 cut(s)	795
BssECI	CCNNGG	2 cut(s)	490, 1210
BssMI	GATC	4 cut(s)	184, 343, 484, 889
BssT1I	CCWWGG	2 cut(s)	490, 1210
Bst2UI	CCWGG	1 cut(s)	1247
Bst4CI	ACNGT	5 cut(s)	744, 884, 991, 1045, 1238
Bst6I	CTCTTC	1 cut(s)	399
BstDEI	CTNAG	3 cut(s)	275, 392, 1006
BstF5I	GGATG	3 cut(s)	799, 1296, 1300
BstFNI	CGCG	1 cut(s)	638
BstHHI	GCGC	1 cut(s)	1224
BstKTI	GATC	4 cut(s)	187, 346, 487, 892
BstMBI	GATC	4 cut(s)	184, 343, 484, 889
BstMWI	GCNNNNNNNGC	1 cut(s)	1230
BstNI	CCWGG	1 cut(s)	1247
BstNSI	RCATGY	2 cut(s)	804, 1111
BstSCI	CCNGG	2 cut(s)	850, 1245
BstSFI	CTRYAG	1 cut(s)	978
BstUI	CGCG	1 cut(s)	638
BstV1I	GCAGC	6 cut(s)	59, 177, 478, 482, 992, 995
BstV2I	GAAGAC	2 cut(s)	1278, 1338
BstX2I	RGATCY	2 cut(s)	343, 889
BstYI	RGATCY	2 cut(s)	343, 889
BtrI	CACGTC	1 cut(s)	857
BtsCI	GGATG	3 cut(s)	799, 1296, 1300
BtsI	GCAGTG	2 cut(s)	354, 1078
BtsIMutI	CAGTG	2 cut(s)	354, 1078
CaiI	CAGNNNCTG	3 cut(s)	742, 989, 1262
CfoI	GCGC	1 cut(s)	1224
CsiI	ACCWGGT	1 cut(s)	1245
Csp6I	GTAC	1 cut(s)	975
CviAII	CATG	5 cut(s)	761, 801, 839, 1108, 1121
CviQI	GTAC	1 cut(s)	975
DdeI	CTNAG	3 cut(s)	275, 392, 1006
DpnI	GATC	4 cut(s)	186, 345, 486, 891
DpnII	GATC	4 cut(s)	184, 343, 484, 889
DraI	TTTAAA	1 cut(s)	120
DriI	GACNNNNNGTC	1 cut(s)	1111
Eam1104I	CTCTTC	1 cut(s)	399
Eam1105I	GACNNNNNGTC	1 cut(s)	1111
EarI	CTCTTC	1 cut(s)	399
Eco130I	CCWWGG	2 cut(s)	490, 1210
Eco57I	CTGAAG	2 cut(s)	914, 1290
EcoRI	GAATTC	2 cut(s)	833, 1016
EcoRII	CCWGG	1 cut(s)	1245
EcoT14I	CCWWGG	2 cut(s)	490, 1210
EcoT22I	ATGCAT	1 cut(s)	719
ErhI	CCWWGG	2 cut(s)	490, 1210
FaeI	CATG	5 cut(s)	764, 804, 842, 1111, 1124
FalI	AAGNNNNNCTT	2 cut(s)	61, 93
FatI	CATG	5 cut(s)	760, 800, 838, 1107, 1120
FauI	CCCGC	2 cut(s)	1029, 1179
FbaI	TGATCA	1 cut(s)	184
Fnu4HI	GCNGC	7 cut(s)	73, 191, 467, 496, 639, 981, 984
FokI	GGATG	3 cut(s)	806, 1303, 1307
Fsp4HI	GCNGC	7 cut(s)	73, 191, 467, 496, 639, 981, 984
FspBI	CTAG	2 cut(s)	902, 1206
GlaI	GCGC	1 cut(s)	1223
GluI	GCNGC	7 cut(s)	73, 191, 467, 496, 639, 981, 984
GsuI	CTGGAG	1 cut(s)	278
HapII	CCGG	1 cut(s)	852
HhaI	GCGC	1 cut(s)	1224
Hin1II	CATG	5 cut(s)	764, 804, 842, 1111, 1124
Hin6I	GCGC	1 cut(s)	1222
HinP1I	GCGC	1 cut(s)	1222
HincII	GTYRAC	1 cut(s)	411
HindII	GTYRAC	1 cut(s)	411
HindIII	AAGCTT	1 cut(s)	337
HinfI	GANTC	5 cut(s)	108, 202, 533, 698, 1265
HpaII	CCGG	1 cut(s)	852
HphI	GGTGA	2 cut(s)	543, 1340
Hpy166II	GTNNAC	3 cut(s)	411, 634, 1243
Hpy188I	TCNGA	9 cut(s)	135, 237, 738, 832, 894, 916, 1009, 1049, 1270
Hpy188III	TCNNGA	7 cut(s)	105, 295, 331, 482, 596, 605, 1256
Hpy8I	GTNNAC	3 cut(s)	411, 634, 1243
HpyAV	CCTTC	3 cut(s)	384, 889, 1314
HpyCH4III	ACNGT	5 cut(s)	744, 884, 991, 1045, 1238
HpyCH4IV	ACGT	2 cut(s)	691, 856
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1230
HpyF3I	CTNAG	3 cut(s)	275, 392, 1006
HpySE526I	ACGT	2 cut(s)	691, 856
Hsp92II	CATG	5 cut(s)	764, 804, 842, 1111, 1124
HspAI	GCGC	1 cut(s)	1222
Ksp22I	TGATCA	1 cut(s)	184
Kzo9I	GATC	4 cut(s)	184, 343, 484, 889
LmnI	GCTCC	2 cut(s)	297, 898
Lsp1109I	GCAGC	6 cut(s)	59, 177, 478, 482, 992, 995
LweI	GCATC	3 cut(s)	478, 726, 1051
MabI	ACCWGGT	1 cut(s)	1245
MaeI	CTAG	2 cut(s)	902, 1206
MaeII	ACGT	2 cut(s)	691, 856
MaeIII	GTNAC	4 cut(s)	538, 549, 699, 766
MalI	GATC	4 cut(s)	186, 345, 486, 891
MbiI	CCGCTC	1 cut(s)	1081
MboI	GATC	4 cut(s)	184, 343, 484, 889
MboII	GAAGA	8 cut(s)	416, 899, 1007, 1022, 1025, 1283, 1289, 1343
MflI	RGATCY	2 cut(s)	343, 889
MhlI	GDGCHC	1 cut(s)	1302
MlyI	GAGTC	4 cut(s)	102, 211, 542, 707
MnlI	CCTC	4 cut(s)	272, 410, 572, 945
Mph1103I	ATGCAT	1 cut(s)	719
MseI	TTAA	7 cut(s)	119, 128, 510, 570, 729, 1002, 1089
MspA1I	CMGCKG	1 cut(s)	190
MspI	CCGG	1 cut(s)	852
MspR9I	CCNGG	2 cut(s)	852, 1247
Mva1269I	GAATGC	1 cut(s)	294
MvaI	CCWGG	1 cut(s)	1247
MvnI	CGCG	1 cut(s)	638
MwoI	GCNNNNNNNGC	1 cut(s)	1230
NciI	CCSGG	1 cut(s)	852
NdeII	GATC	4 cut(s)	184, 343, 484, 889
NlaIII	CATG	5 cut(s)	764, 804, 842, 1111, 1124
NmuCI	GTSAC	3 cut(s)	549, 699, 766
NsiI	ATGCAT	1 cut(s)	719
NspI	RCATGY	2 cut(s)	804, 1111
PcsI	WCGNNNNNNNCGW	1 cut(s)	542
PctI	GAATGC	1 cut(s)	294
PfeI	GAWTC	1 cut(s)	1265
PfoI	TCCNGGA	1 cut(s)	850
PkrI	GCNGC	7 cut(s)	74, 192, 468, 497, 640, 982, 985
PleI	GAGTC	4 cut(s)	102, 210, 541, 706
PpsI	GAGTC	4 cut(s)	102, 210, 541, 706
Psp6I	CCWGG	1 cut(s)	1245
PspGI	CCWGG	1 cut(s)	1245
PsrI	GAACNNNNNNTAC	2 cut(s)	771, 803
PstI	CTGCAG	1 cut(s)	982
PstNI	CAGNNNCTG	3 cut(s)	742, 989, 1262
PsuI	RGATCY	2 cut(s)	343, 889
PvuII	CAGCTG	1 cut(s)	190
RsaI	GTAC	1 cut(s)	976
RsaNI	GTAC	1 cut(s)	975
SaqAI	TTAA	7 cut(s)	119, 128, 510, 570, 729, 1002, 1089
SatI	GCNGC	7 cut(s)	73, 191, 467, 496, 639, 981, 984
Sau3AI	GATC	4 cut(s)	184, 343, 484, 889
SchI	GAGTC	4 cut(s)	102, 211, 542, 707
ScrFI	CCNGG	2 cut(s)	852, 1247
SduI	GDGCHC	1 cut(s)	1302
SexAI	ACCWGGT	1 cut(s)	1245
SfaNI	GCATC	3 cut(s)	478, 726, 1051
SfcI	CTRYAG	1 cut(s)	978
SmlI	CTYRAG	1 cut(s)	199
SmoI	CTYRAG	1 cut(s)	199
SsiI	CCGC	4 cut(s)	638, 1022, 1081, 1172
SspMI	CTAG	2 cut(s)	902, 1206
StyD4I	CCNGG	2 cut(s)	850, 1245
StyI	CCWWGG	2 cut(s)	490, 1210
TaaI	ACNGT	5 cut(s)	744, 884, 991, 1045, 1238
TaiI	ACGT	2 cut(s)	694, 859
TaqI	TCGA	2 cut(s)	402, 1186
TatI	WGTACW	1 cut(s)	974
TauI	GCSGC	1 cut(s)	641
TfiI	GAWTC	1 cut(s)	1265
Tru1I	TTAA	7 cut(s)	119, 128, 510, 570, 729, 1002, 1089
Tru9I	TTAA	7 cut(s)	119, 128, 510, 570, 729, 1002, 1089
TscAI	CASTG	2 cut(s)	361, 1078
TseFI	GTSAC	3 cut(s)	549, 699, 766
TseI	GCWGC	6 cut(s)	72, 190, 466, 495, 980, 983
Tsp45I	GTSAC	3 cut(s)	549, 699, 766
TspDTI	ATGAA	6 cut(s)	219, 366, 725, 810, 1135, 1335
TspRI	CASTG	2 cut(s)	361, 1078
XapI	RAATTY	7 cut(s)	61, 115, 600, 833, 917, 940, 1016
XceI	RCATGY	2 cut(s)	804, 1111
XspI	CTAG	2 cut(s)	902, 1206
Zsp2I	ATGCAT	1 cut(s)	719

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.