Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0005006

Physical Location & Seq

Genomic Coordinates Reverse (-)

17196454 .. 17199558

Gene Structure 3105 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G165500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

ATGGCGGAGGACCAGGACCAAGACGCGGCTCTCCTTGAGGAAGAGTACGCCGTGTGGAAGAAGAACACCCCTTTCCTCTACGACCTCATCATCTCTCACCCTCTCGAATGGCCATCTCTCACCGTCCATTGGGCTCCATCGGCCCCACAGCCCAAAGCCGAAACATCTTTCGCCGTACACAAGCTCGTCCTGGGTACCCACACCTCCGATGGCTACCCCAACTTCCTCATGGTCGCCGACGCCCTCCTCCCCACATCCCAACCCAACTTTGGCGCCATTTCTGAAGAAGATCCCGAGATGCCTAAGGTGGAAATAACGCAGAAGATTCCTGTTGATGGGGAAGTGAATAGGGCACGGTGGATGCCACAGAAACCAACTATTGTGGGTGCGAAGACCAGCGGTGCTGAGGTGTATGTGTTTGATTCTGCGAAACATGGGTTGAAGCCTCAAGAGGGTGGTTGTGATCCTGATTTGAGGTTAACGGGTCATGATAAAGAAGGATATGGCTTGTCCTGGAGCCCTTTTAAGGAGGGTTACCTTTTGAGTGGTTCTTATGATTGTAAAATTTGTTTATGGGATGTGTCTGCTTCGCCTCAAGAGAAAGTGCTTGCTCCAATCCATGTTTATGAGCGTCATGAAAGTGTGGTTGGAGATGTATCATGGCATCCGAAGAACGAGAACCTATTTGGGTCGGTTGGGGATGATTGTCAGTTGATGATTTGGGACTTACGCACAAACCAAACGCAGCATTCTGTCAAAGCTCATGAGAAAGAGGTGAACTATCTTTCTTTCAATCCGTATAATGAATGGATTCTGGCGACAGCATCTTCAGACACTACCATTGGTCTGTTAGATATGCGGAAACTGTCTGTGCCATTGCATGTTCTGAGTAGCCACACAGAGGAGGTGTTCCAGGTTGAATGGGATCCGAATCATGAAACTGTGTTGGCATCTTACGCTGATGACCGAAGGTTGATGGTTTGGGACCTCAACAGGATTGGGGATGAGCAGTTGGAGGGAGATGGTGATGATGGCCCACCAGAACTTCTCTTCTCACATGGCGGCCATAAAGCAAAGATATCAGATTTCTCTTGGAACAAATATGAGCCATGGGTCATTTCAAGTGTAGCTGAAGACAACACTCTTCAAGTTTGGCAAATTGCTGACAGCATATATGGGGACGATTATGATGTGCAAGCTTCCGATGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0031461 GO:0032991 GO:0044424 GO:0044444 GO:0044464 GO:0080008 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04218 map04218

Pfam Domains

Protein Families

CAF1C_H4-bd WD40

Protein Analysis

404

Amino Acids

45.28

Weight (kDa)

4.6

Isoelectric Point (pI)

36.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005006)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16780 AT4G35050
fragaria_vesca	FvH4_2g01180
malus_domestica	MD05G1121700.v1.1 MD10G1124300.v1.1
prunus_persica	Prupe.8G165500_v2.0.a1
pyrus_communis	pycom05g11570
rosa_chinensis	RchiOBHm_Chr6g0251791 RchiOBHm_Chr6g0251811
rosa_laevigata	RLG00000015428 RLG00000015429
rosa_multiflora	Rmu_co8247185.1_g000001 Rmu_co8464529.1_g000001 Rmu_sc0003965.1_g000001 Rmu_sc0019305.1_g000001 Rmu_sc0025272.1_g000001 Rmu_ssc0000213.1_g000115 Rmu_ssc0000213.1_g000116
rosa_roxburghii	Rroxscaffold_7G00216370 Rroxscaffold_7G00216380
rosa_rugosa	Rorug05G0504000
rosa_samantha	Rh6AG014800 Rh6AG014900 Rh6BG013200 Rh6BG013300 Rh6CG010200 Rh6CG010300 Rh6DG011400 Rh6DG011500
rosa_wichuraiana	Rw6G001470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	194
AccB1I	GGYRCC	2 cut(s)	194, 272
AccII	CGCG	1 cut(s)	26
AciI	CCGC	5 cut(s)	5, 26, 399, 859, 1062
AclWI	GGATC	4 cut(s)	284, 458, 920, 933
AcoI	YGGCCR	2 cut(s)	110, 1063
AcsI	RAATTY	1 cut(s)	564
AcuI	CTGAAG	3 cut(s)	303, 813, 1152
AcyI	GRCGYC	2 cut(s)	240, 273
AfaI	GTAC	3 cut(s)	47, 177, 196
AfiI	CCNNNNNNNGG	7 cut(s)	25, 129, 269, 335, 452, 526, 901
AgsI	TTSAA	5 cut(s)	442, 793, 920, 1122, 1148
AjnI	CCWGG	4 cut(s)	12, 189, 512, 912
AjuI	GAANNNNNNNTTGG	2 cut(s)	630, 662
AluBI	AGCT	4 cut(s)	184, 761, 1130, 1199
AluI	AGCT	4 cut(s)	184, 761, 1130, 1199
AlwI	GGATC	4 cut(s)	284, 458, 920, 933
Ama87I	CYCGRG	1 cut(s)	293
AoxI	GGCC	4 cut(s)	110, 141, 1033, 1063
ApeKI	GCWGC	1 cut(s)	745
ApoI	RAATTY	1 cut(s)	564
Asp700I	GAANNNNTTC	1 cut(s)	810
Asp718I	GGTACC	1 cut(s)	194
AspLEI	GCGC	1 cut(s)	275
AspS9I	GGNCC	5 cut(s)	10, 16, 142, 985, 1034
AsuHPI	GGTGA	4 cut(s)	89, 112, 787, 1037
AvaI	CYCGRG	1 cut(s)	293
AvaII	GGWCC	3 cut(s)	10, 16, 985
AxyI	CCTNAGG	1 cut(s)	303
BaeGI	GKGCMC	1 cut(s)	355
BalI	TGGCCA	1 cut(s)	112
BamHI	GGATCC	1 cut(s)	925
BanI	GGYRCC	2 cut(s)	194, 272
BanII	GRGCYC	2 cut(s)	136, 521
BbsI	GAAGAC	2 cut(s)	398, 1140
BbvCI	CCTCAGC	1 cut(s)	405
BbvI	GCAGC	1 cut(s)	757
BccI	CCATC	7 cut(s)	121, 145, 203, 329, 970, 1016, 1025
BceAI	ACGGC	2 cut(s)	35, 158
BciT130I	CCWGG	4 cut(s)	14, 191, 514, 914
BfoI	RGCGCY	1 cut(s)	276
BisI	GCNGC	3 cut(s)	27, 746, 1063
BlsI	GCNGC	3 cut(s)	28, 747, 1064
Bme1390I	CCNGG	4 cut(s)	14, 191, 514, 914
Bme18I	GGWCC	3 cut(s)	10, 16, 985
BmeT110I	CYCGRG	1 cut(s)	293
BmgT120I	GGNCC	5 cut(s)	10, 16, 142, 985, 1034
BmiI	GGNNCC	7 cut(s)	135, 144, 196, 274, 518, 927, 986
BmrFI	CCNGG	4 cut(s)	14, 191, 514, 914
BmsI	GCATC	5 cut(s)	288, 351, 673, 833, 959
BpiI	GAAGAC	2 cut(s)	398, 1140
BpmI	CTGGAG	1 cut(s)	535
Bpu10I	CCTNAGC	1 cut(s)	405
BpuEI	CTTGAG	3 cut(s)	56, 432, 579
BsaBI	GATNNNNATC	1 cut(s)	930
BsaHI	GRCGYC	2 cut(s)	240, 273
BsaJI	CCNNGG	2 cut(s)	190, 1109
Bsc4I	CCNNNNNNNGG	7 cut(s)	25, 129, 269, 335, 452, 526, 901
Bse21I	CCTNAGG	1 cut(s)	303
Bse3DI	GCAATG	1 cut(s)	875
Bse8I	GATNNNNATC	1 cut(s)	930
BseBI	CCWGG	4 cut(s)	14, 191, 514, 914
BseDI	CCNNGG	2 cut(s)	190, 1109
BseGI	GGATG	6 cut(s)	254, 366, 583, 664, 706, 1009
BseJI	GATNNNNATC	1 cut(s)	930
BseLI	CCNNNNNNNGG	7 cut(s)	25, 129, 269, 335, 452, 526, 901
BseMI	GCAATG	1 cut(s)	875
BseMII	CTCAG	2 cut(s)	396, 878
BseRI	GAGGAG	2 cut(s)	236, 917
BseSI	GKGCMC	1 cut(s)	355
BseXI	GCAGC	1 cut(s)	757
Bsh1236I	CGCG	1 cut(s)	26
BshFI	GGCC	4 cut(s)	112, 143, 1035, 1065
BshNI	GGYRCC	2 cut(s)	194, 272
BsiHKCI	CYCGRG	1 cut(s)	293
BslFI	GGGAC	3 cut(s)	737, 998, 1193
BslI	CCNNNNNNNGG	7 cut(s)	25, 129, 269, 335, 452, 526, 901
BsmFI	GGGAC	3 cut(s)	737, 998, 1193
BsmI	GAATGC	1 cut(s)	748
BsnI	GGCC	4 cut(s)	112, 143, 1035, 1065
BsoBI	CYCGRG	1 cut(s)	293
Bsp1286I	GDGCHC	3 cut(s)	136, 355, 521
Bsp143I	GATC	3 cut(s)	289, 463, 925
Bsp19I	CCATGG	1 cut(s)	1109
BspACI	CCGC	5 cut(s)	5, 26, 399, 859, 1062
BspANI	GGCC	4 cut(s)	112, 143, 1035, 1065
BspCNI	CTCAG	2 cut(s)	397, 879
BspFNI	CGCG	1 cut(s)	26
BspHI	TCATGA	4 cut(s)	487, 634, 763, 934
BspLI	GGNNCC	7 cut(s)	135, 144, 196, 274, 518, 927, 986
BspPI	GGATC	4 cut(s)	284, 458, 920, 933
BspT107I	GGYRCC	2 cut(s)	194, 272
BsrDI	GCAATG	1 cut(s)	875
BssECI	CCNNGG	2 cut(s)	190, 1109
BssMI	GATC	3 cut(s)	289, 463, 925
BssNI	GRCGYC	2 cut(s)	240, 273
BssT1I	CCWWGG	1 cut(s)	1109
Bst2UI	CCWGG	4 cut(s)	14, 191, 514, 914
Bst4CI	ACNGT	4 cut(s)	124, 357, 867, 943
Bst6I	CTCTTC	3 cut(s)	36, 1055, 1149
BstACI	GRCGYC	2 cut(s)	240, 273
BstC8I	GCNNGC	2 cut(s)	609, 1197
BstDEI	CTNAG	3 cut(s)	303, 405, 887
BstDSI	CCRYGG	1 cut(s)	1109
BstEII	GGTNACC	1 cut(s)	533
BstF5I	GGATG	6 cut(s)	254, 366, 583, 664, 706, 1009
BstFNI	CGCG	1 cut(s)	26
BstH2I	RGCGCY	1 cut(s)	276
BstHHI	GCGC	1 cut(s)	275
BstKTI	GATC	3 cut(s)	292, 466, 928
BstMBI	GATC	3 cut(s)	289, 463, 925
BstMWI	GCNNNNNNNGC	2 cut(s)	140, 956
BstNI	CCWGG	4 cut(s)	14, 191, 514, 914
BstNSI	RCATGY	1 cut(s)	884
BstPI	GGTNACC	1 cut(s)	533
BstSCI	CCNGG	4 cut(s)	12, 189, 512, 912
BstSLI	GKGCMC	1 cut(s)	355
BstUI	CGCG	1 cut(s)	26
BstV1I	GCAGC	1 cut(s)	757
BstV2I	GAAGAC	2 cut(s)	398, 1140
BstX2I	RGATCY	2 cut(s)	289, 925
BstYI	RGATCY	2 cut(s)	289, 925
Bsu36I	CCTNAGG	1 cut(s)	303
BsuRI	GGCC	4 cut(s)	112, 143, 1035, 1065
BtgI	CCRYGG	1 cut(s)	1109
BtsCI	GGATG	6 cut(s)	254, 366, 583, 664, 706, 1009
Cac8I	GCNNGC	2 cut(s)	609, 1197
CciI	TCATGA	4 cut(s)	487, 634, 763, 934
CfoI	GCGC	1 cut(s)	275
Cfr13I	GGNCC	5 cut(s)	10, 16, 142, 985, 1034
CseI	GACGC	3 cut(s)	32, 248, 620
Csp6I	GTAC	3 cut(s)	46, 176, 195
CspCI	CAANNNNNGTGG	2 cut(s)	363, 398
CviQI	GTAC	3 cut(s)	46, 176, 195
DdeI	CTNAG	3 cut(s)	303, 405, 887
DinI	GGCGCC	1 cut(s)	274
DpnI	GATC	3 cut(s)	291, 465, 927
DpnII	GATC	3 cut(s)	289, 463, 925
EaeI	YGGCCR	2 cut(s)	110, 1063
Eam1104I	CTCTTC	3 cut(s)	36, 1055, 1149
EarI	CTCTTC	3 cut(s)	36, 1055, 1149
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	1109
Eco24I	GRGCYC	2 cut(s)	136, 521
Eco32I	GATATC	1 cut(s)	1080
Eco47I	GGWCC	3 cut(s)	10, 16, 985
Eco57I	CTGAAG	3 cut(s)	303, 813, 1152
Eco81I	CCTNAGG	1 cut(s)	303
Eco88I	CYCGRG	1 cut(s)	293
Eco91I	GGTNACC	1 cut(s)	533
EcoO109I	RGGNCCY	1 cut(s)	985
EcoO65I	GGTNACC	1 cut(s)	533
EcoRII	CCWGG	4 cut(s)	12, 189, 512, 912
EcoRV	GATATC	1 cut(s)	1080
EcoT14I	CCWWGG	1 cut(s)	1109
EcoT38I	GRGCYC	2 cut(s)	136, 521
EgeI	GGCGCC	1 cut(s)	274
EheI	GGCGCC	1 cut(s)	274
ErhI	CCWWGG	1 cut(s)	1109
FaqI	GGGAC	3 cut(s)	737, 998, 1193
Fnu4HI	GCNGC	3 cut(s)	27, 746, 1063
FokI	GGATG	6 cut(s)	241, 373, 590, 651, 713, 1016
FriOI	GRGCYC	2 cut(s)	136, 521
Fsp4HI	GCNGC	3 cut(s)	27, 746, 1063
GlaI	GCGC	1 cut(s)	274
GluI	GCNGC	3 cut(s)	27, 746, 1063
GsuI	CTGGAG	1 cut(s)	535
HaeII	RGCGCY	1 cut(s)	276
HaeIII	GGCC	4 cut(s)	112, 143, 1035, 1065
HgaI	GACGC	3 cut(s)	32, 248, 620
HhaI	GCGC	1 cut(s)	275
Hin1I	GRCGYC	2 cut(s)	240, 273
Hin6I	GCGC	1 cut(s)	273
HinP1I	GCGC	1 cut(s)	273
HincII	GTYRAC	1 cut(s)	480
HindII	GTYRAC	1 cut(s)	480
HindIII	AAGCTT	1 cut(s)	1197
HinfI	GANTC	4 cut(s)	325, 422, 811, 931
HpaI	GTTAAC	1 cut(s)	480
HphI	GGTGA	4 cut(s)	89, 112, 787, 1037
Hpy166II	GTNNAC	3 cut(s)	178, 480, 778
Hpy188I	TCNGA	8 cut(s)	208, 283, 669, 832, 888, 930, 1084, 1204
Hpy188III	TCNNGA	9 cut(s)	104, 293, 449, 467, 488, 596, 635, 764, 935
Hpy8I	GTNNAC	3 cut(s)	178, 480, 778
Hpy99I	CGWCG	1 cut(s)	242
HpyAV	CCTTC	2 cut(s)	491, 963
HpyCH4III	ACNGT	4 cut(s)	124, 357, 867, 943
HpyCH4V	TGCA	2 cut(s)	880, 1195
HpyF10VI	GCNNNNNNNGC	2 cut(s)	140, 956
HpyF3I	CTNAG	3 cut(s)	303, 405, 887
Hsp92I	GRCGYC	2 cut(s)	240, 273
HspAI	GCGC	1 cut(s)	273
KasI	GGCGCC	1 cut(s)	272
KpnI	GGTACC	1 cut(s)	198
KspAI	GTTAAC	1 cut(s)	480
Kzo9I	GATC	3 cut(s)	289, 463, 925
LmnI	GCTCC	3 cut(s)	139, 516, 616
Lsp1109I	GCAGC	1 cut(s)	757
LweI	GCATC	5 cut(s)	288, 351, 673, 833, 959
MaeIII	GTNAC	1 cut(s)	533
MalI	GATC	3 cut(s)	291, 465, 927
MboI	GATC	3 cut(s)	289, 463, 925
MflI	RGATCY	2 cut(s)	289, 925
MhlI	GDGCHC	3 cut(s)	136, 355, 521
MlsI	TGGCCA	1 cut(s)	112
MluCI	AATT	2 cut(s)	564, 1158
MluNI	TGGCCA	1 cut(s)	112
Mly113I	GGCGCC	1 cut(s)	273
MmeI	TCCRAC	2 cut(s)	628, 993
Mox20I	TGGCCA	1 cut(s)	112
MroXI	GAANNNNTTC	1 cut(s)	810
MscI	TGGCCA	1 cut(s)	112
MseI	TTAA	3 cut(s)	479, 525, 1210
MslI	CAYNNNNRTG	2 cut(s)	624, 639
Msp20I	TGGCCA	1 cut(s)	112
MspA1I	CMGCKG	1 cut(s)	399
MspR9I	CCNGG	4 cut(s)	14, 191, 514, 914
Mva1269I	GAATGC	1 cut(s)	748
MvaI	CCWGG	4 cut(s)	14, 191, 514, 914
MvnI	CGCG	1 cut(s)	26
MwoI	GCNNNNNNNGC	2 cut(s)	140, 956
NarI	GGCGCC	1 cut(s)	273
NcoI	CCATGG	1 cut(s)	1109
NdeII	GATC	3 cut(s)	289, 463, 925
NlaIV	GGNNCC	7 cut(s)	135, 144, 196, 274, 518, 927, 986
NspI	RCATGY	1 cut(s)	884
PagI	TCATGA	4 cut(s)	487, 634, 763, 934
PctI	GAATGC	1 cut(s)	748
PdmI	GAANNNNTTC	1 cut(s)	810
PfeI	GAWTC	4 cut(s)	325, 422, 811, 931
PfoI	TCCNGGA	1 cut(s)	512
PkrI	GCNGC	3 cut(s)	28, 747, 1064
PluTI	GGCGCC	1 cut(s)	276
PpuMI	RGGWCCY	1 cut(s)	985
Psp5II	RGGWCCY	1 cut(s)	985
Psp6I	CCWGG	4 cut(s)	12, 189, 512, 912
PspEI	GGTNACC	1 cut(s)	533
PspGI	CCWGG	4 cut(s)	12, 189, 512, 912
PspN4I	GGNNCC	7 cut(s)	135, 144, 196, 274, 518, 927, 986
PspPI	GGNCC	5 cut(s)	10, 16, 142, 985, 1034
PspPPI	RGGWCCY	1 cut(s)	985
PsuI	RGATCY	2 cut(s)	289, 925
RsaI	GTAC	3 cut(s)	47, 177, 196
RsaNI	GTAC	3 cut(s)	46, 176, 195
RseI	CAYNNNNRTG	2 cut(s)	624, 639
SaqAI	TTAA	3 cut(s)	479, 525, 1210
SatI	GCNGC	3 cut(s)	27, 746, 1063
Sau3AI	GATC	3 cut(s)	289, 463, 925
Sau96I	GGNCC	5 cut(s)	10, 16, 142, 985, 1034
ScrFI	CCNGG	4 cut(s)	14, 191, 514, 914
SduI	GDGCHC	3 cut(s)	136, 355, 521
SfaNI	GCATC	5 cut(s)	288, 351, 673, 833, 959
SfoI	GGCGCC	1 cut(s)	274
SinI	GGWCC	3 cut(s)	10, 16, 985
SmiMI	CAYNNNNRTG	2 cut(s)	624, 639
SmlI	CTYRAG	3 cut(s)	35, 447, 594
SmoI	CTYRAG	3 cut(s)	35, 447, 594
Sse9I	AATT	2 cut(s)	564, 1158
SsiI	CCGC	5 cut(s)	5, 26, 399, 859, 1062
SspDI	GGCGCC	1 cut(s)	272
StyD4I	CCNGG	4 cut(s)	12, 189, 512, 912
StyI	CCWWGG	1 cut(s)	1109
TaaI	ACNGT	4 cut(s)	124, 357, 867, 943
TaqI	TCGA	1 cut(s)	105
TaqII	GACCGA	1 cut(s)	981
TasI	AATT	2 cut(s)	564, 1158
TauI	GCSGC	2 cut(s)	29, 1065
TfiI	GAWTC	4 cut(s)	325, 422, 811, 931
Tru1I	TTAA	3 cut(s)	479, 525, 1210
Tru9I	TTAA	3 cut(s)	479, 525, 1210
TseI	GCWGC	1 cut(s)	745
TspDTI	ATGAA	3 cut(s)	651, 819, 951
TspGWI	ACGGA	1 cut(s)	786
VpaK11BI	GGWCC	3 cut(s)	10, 16, 985
XapI	RAATTY	1 cut(s)	564
XceI	RCATGY	1 cut(s)	884
XcmI	CCANNNNNNNNNTGG	3 cut(s)	206, 226, 266
XmnI	GAANNNNTTC	1 cut(s)	810

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.