Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003965.1

Orthogroup ID

OG0005006

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1787

Gene Structure 1787 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003965.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 290 bp

agaggaggtattccaggttgaatgggaccctaatcatgatactgtgctggcatcttacgctggagggagatggggatgagcagttggagggtgatggggatgatgggccaccagaactgtttgcacatggcggtcatagagcaaagatatcagatttctcatggaacaaagaagttccatggctcatttcaagtgtagccgaagacaacactctccaggtctggcaaatggctgatggcatttacggtgacgatgatgtgcaagaaggggaatcttctgatgtccgatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0031461 GO:0032991 GO:0044424 GO:0044444 GO:0044464 GO:0080008 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04218 map04218

Pfam Domains

Protein Families

CAF1C_H4-bd WD40

Protein Analysis

95

Amino Acids

10.66

Weight (kDa)

4.22

Isoelectric Point (pI)

41.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005006)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16780 AT4G35050
fragaria_vesca	FvH4_2g01180
malus_domestica	MD05G1121700.v1.1 MD10G1124300.v1.1
prunus_persica	Prupe.8G165500_v2.0.a1
pyrus_communis	pycom05g11570
rosa_chinensis	RchiOBHm_Chr6g0251791 RchiOBHm_Chr6g0251811
rosa_laevigata	RLG00000015428 RLG00000015429
rosa_multiflora	Rmu_co8247185.1_g000001 Rmu_co8464529.1_g000001 Rmu_sc0003965.1_g000001 Rmu_sc0019305.1_g000001 Rmu_sc0025272.1_g000001 Rmu_ssc0000213.1_g000115 Rmu_ssc0000213.1_g000116
rosa_roxburghii	Rroxscaffold_7G00216370 Rroxscaffold_7G00216380
rosa_rugosa	Rorug05G0504000
rosa_samantha	Rh6AG014800 Rh6AG014900 Rh6BG013200 Rh6BG013300 Rh6CG010200 Rh6CG010300 Rh6DG011400 Rh6DG011500
rosa_wichuraiana	Rw6G001470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	131
AgsI	TTSAA	2 cut(s)	21, 191
AjnI	CCWGG	2 cut(s)	13, 215
AoxI	GGCC	1 cut(s)	106
AspS9I	GGNCC	2 cut(s)	26, 106
AsuHPI	GGTGA	2 cut(s)	103, 259
AvaII	GGWCC	1 cut(s)	26
BbsI	GAAGAC	1 cut(s)	209
BccI	CCATC	4 cut(s)	64, 88, 97, 229
BciT130I	CCWGG	2 cut(s)	15, 217
Bme1390I	CCNGG	2 cut(s)	15, 217
Bme18I	GGWCC	1 cut(s)	26
BmgT120I	GGNCC	2 cut(s)	26, 106
BmiI	GGNNCC	2 cut(s)	27, 28
BmrFI	CCNGG	2 cut(s)	15, 217
BmsI	GCATC	1 cut(s)	60
BpiI	GAAGAC	1 cut(s)	209
BpmI	CTGGAG	2 cut(s)	82, 199
BsaJI	CCNNGG	1 cut(s)	178
BseBI	CCWGG	2 cut(s)	15, 217
BseDI	CCNNGG	1 cut(s)	178
BseGI	GGATG	2 cut(s)	81, 105
BseRI	GAGGAG	1 cut(s)	18
BshFI	GGCC	1 cut(s)	108
BslFI	GGGAC	1 cut(s)	39
BsmFI	GGGAC	1 cut(s)	39
BsnI	GGCC	1 cut(s)	108
Bsp19I	CCATGG	1 cut(s)	178
BspACI	CCGC	1 cut(s)	131
BspANI	GGCC	1 cut(s)	108
BspHI	TCATGA	1 cut(s)	35
BspLI	GGNNCC	2 cut(s)	27, 28
BssECI	CCNNGG	1 cut(s)	178
BssT1I	CCWWGG	1 cut(s)	178
Bst2UI	CCWGG	2 cut(s)	15, 217
Bst4CI	ACNGT	3 cut(s)	44, 119, 247
BstC8I	GCNNGC	1 cut(s)	49
BstDSI	CCRYGG	1 cut(s)	178
BstF5I	GGATG	2 cut(s)	81, 105
BstMWI	GCNNNNNNNGC	1 cut(s)	57
BstNI	CCWGG	2 cut(s)	15, 217
BstSCI	CCNGG	2 cut(s)	13, 215
BstV2I	GAAGAC	1 cut(s)	209
BsuRI	GGCC	1 cut(s)	108
BtgI	CCRYGG	1 cut(s)	178
BtsCI	GGATG	2 cut(s)	81, 105
Cac8I	GCNNGC	1 cut(s)	49
CciI	TCATGA	1 cut(s)	35
Cfr13I	GGNCC	2 cut(s)	26, 106
CviAII	CATG	4 cut(s)	36, 127, 161, 179
CviJI	RGCY	4 cut(s)	108, 183, 199, 232
CviKI_1	RGCY	4 cut(s)	108, 183, 199, 232
Eco130I	CCWWGG	1 cut(s)	178
Eco32I	GATATC	1 cut(s)	149
Eco47I	GGWCC	1 cut(s)	26
EcoO109I	RGGNCCY	1 cut(s)	26
EcoRII	CCWGG	2 cut(s)	13, 215
EcoRV	GATATC	1 cut(s)	149
EcoT14I	CCWWGG	1 cut(s)	178
ErhI	CCWWGG	1 cut(s)	178
FaeI	CATG	4 cut(s)	39, 130, 164, 182
FaiI	YATR	5 cut(s)	37, 128, 137, 162, 180
FaqI	GGGAC	1 cut(s)	39
FatI	CATG	4 cut(s)	35, 126, 160, 178
FokI	GGATG	2 cut(s)	88, 112
GsuI	CTGGAG	2 cut(s)	82, 199
HaeIII	GGCC	1 cut(s)	108
Hin1II	CATG	4 cut(s)	39, 130, 164, 182
HinfI	GANTC	1 cut(s)	271
HphI	GGTGA	2 cut(s)	103, 259
Hpy188I	TCNGA	3 cut(s)	153, 279, 286
Hpy188III	TCNNGA	1 cut(s)	36
HpyAV	CCTTC	1 cut(s)	259
HpyCH4III	ACNGT	3 cut(s)	44, 119, 247
HpyCH4V	TGCA	2 cut(s)	124, 261
HpyF10VI	GCNNNNNNNGC	1 cut(s)	57
Hsp92II	CATG	4 cut(s)	39, 130, 164, 182
KflI	GGGWCCC	1 cut(s)	26
LpnPI	CCDG	7 cut(s)	27, 33, 46, 125, 202, 207, 229
LweI	GCATC	1 cut(s)	60
MaeIII	GTNAC	1 cut(s)	247
MboII	GAAGA	2 cut(s)	214, 266
MmeI	TCCRAC	1 cut(s)	65
MnlI	CCTC	2 cut(s)	57, 81
MspR9I	CCNGG	2 cut(s)	15, 217
MvaI	CCWGG	2 cut(s)	15, 217
MwoI	GCNNNNNNNGC	1 cut(s)	57
NcoI	CCATGG	1 cut(s)	178
NlaIII	CATG	4 cut(s)	39, 130, 164, 182
NlaIV	GGNNCC	2 cut(s)	27, 28
NmuCI	GTSAC	1 cut(s)	247
PagI	TCATGA	1 cut(s)	35
PfeI	GAWTC	1 cut(s)	271
PpuMI	RGGWCCY	1 cut(s)	26
Psp5II	RGGWCCY	1 cut(s)	26
Psp6I	CCWGG	2 cut(s)	13, 215
PspGI	CCWGG	2 cut(s)	13, 215
PspN4I	GGNNCC	2 cut(s)	27, 28
PspPI	GGNCC	2 cut(s)	26, 106
PspPPI	RGGWCCY	1 cut(s)	26
Sau96I	GGNCC	2 cut(s)	26, 106
ScrFI	CCNGG	2 cut(s)	15, 217
SetI	ASST	3 cut(s)	10, 19, 221
SfaNI	GCATC	1 cut(s)	60
SinI	GGWCC	1 cut(s)	26
SsiI	CCGC	1 cut(s)	131
StyD4I	CCNGG	2 cut(s)	13, 215
StyI	CCWWGG	1 cut(s)	178
TaaI	ACNGT	3 cut(s)	44, 119, 247
TfiI	GAWTC	1 cut(s)	271
TseFI	GTSAC	1 cut(s)	247
Tsp45I	GTSAC	1 cut(s)	247
VpaK11BI	GGWCC	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.