Rh6BG013300

WD-40 repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0005006
Physical Location & Seq
Forward (+)
1932638 .. 1934864
2227 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG013300.1

Sequence Viewer

Length: 393 bp
ATGCACGTTTTTGAGCGTCATGAAAGTGTGGTTAATGATGTGTCGTGGCATTTGAAGAACGAGAATCTGTTTGGGTCTTTTGGGGACGATTGTCCATTGATGATATGGGACTTGAGAACAAATCAAGCCCAAGACTCTGTCAAAGTTCATGAGAAAGAGGGATGGCTGGAGGGAGATGGGGATGAGCAGTTGGAGGGTGATGGGGATGATGGGCCACCAGAACTGTTTTCACATGGCGGTCATAGAGCAAAGATATCAGATTTCTCATGGAACAAAGAAGTTCCATGGCTCATTTCAAGTGTAGCCGAAGACAACACTCTCCAGGTCTGGCAAATGGCTGATGGCATTTACGGTGACGATGATGTGCAAGAAGGGGAATCTTCTGATGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0031461 GO:0032991 GO:0044424 GO:0044444 GO:0044464 GO:0080008 GO:1902494 GO:1990234
KEGG Pathways
Metabolic & Signaling
ko04218 map04218
Pfam Domains
Protein Families
CAF1C_H4-bd WD40

Protein Analysis

130

Amino Acids

14.69

Weight (kDa)

4.17

Isoelectric Point (pI)

38.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_THOC3 PF25174 4 - 52 5.1e-06 THOC3 beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 237
AgsI TTSAA 2 cut(s) 55, 297
AjnI CCWGG 1 cut(s) 321
AoxI GGCC 1 cut(s) 212
AspS9I GGNCC 1 cut(s) 212
AsuHPI GGTGA 2 cut(s) 209, 365
BbsI GAAGAC 1 cut(s) 315
BccI CCATC 5 cut(s) 156, 170, 194, 203, 335
BciT130I CCWGG 1 cut(s) 323
Bme1390I CCNGG 1 cut(s) 323
BmgT120I GGNCC 1 cut(s) 212
BmrFI CCNGG 1 cut(s) 323
BoxI GACNNNNGTC 1 cut(s) 90
BpiI GAAGAC 1 cut(s) 315
BpmI CTGGAG 2 cut(s) 188, 305
BpuEI CTTGAG 1 cut(s) 133
BsaJI CCNNGG 1 cut(s) 284
BseBI CCWGG 1 cut(s) 323
BseDI CCNNGG 1 cut(s) 284
BseGI GGATG 3 cut(s) 167, 187, 211
BshFI GGCC 1 cut(s) 214
BslFI GGGAC 2 cut(s) 98, 122
BsmFI GGGAC 2 cut(s) 98, 122
BsnI GGCC 1 cut(s) 214
Bsp19I CCATGG 1 cut(s) 284
BspACI CCGC 1 cut(s) 237
BspANI GGCC 1 cut(s) 214
BspHI TCATGA 2 cut(s) 19, 148
BssECI CCNNGG 1 cut(s) 284
BssT1I CCWWGG 1 cut(s) 284
Bst2UI CCWGG 1 cut(s) 323
Bst4CI ACNGT 2 cut(s) 225, 353
BstDSI CCRYGG 1 cut(s) 284
BstF5I GGATG 3 cut(s) 167, 187, 211
BstNI CCWGG 1 cut(s) 323
BstPAI GACNNNNGTC 1 cut(s) 90
BstSCI CCNGG 1 cut(s) 321
BstV2I GAAGAC 1 cut(s) 315
BsuRI GGCC 1 cut(s) 214
BtgI CCRYGG 1 cut(s) 284
BtsCI GGATG 3 cut(s) 167, 187, 211
CciI TCATGA 2 cut(s) 19, 148
Cfr13I GGNCC 1 cut(s) 212
CseI GACGC 1 cut(s) 5
CviAII CATG 5 cut(s) 20, 149, 233, 267, 285
CviJI RGCY 6 cut(s) 128, 166, 214, 289, 305, 338
CviKI_1 RGCY 6 cut(s) 128, 166, 214, 289, 305, 338
Eco130I CCWWGG 1 cut(s) 284
Eco32I GATATC 1 cut(s) 255
EcoRII CCWGG 1 cut(s) 321
EcoRV GATATC 1 cut(s) 255
EcoT14I CCWWGG 1 cut(s) 284
ErhI CCWWGG 1 cut(s) 284
FaeI CATG 5 cut(s) 23, 152, 236, 270, 288
FaiI YATR 7 cut(s) 21, 106, 150, 234, 243, 268, 286
FaqI GGGAC 2 cut(s) 98, 122
FatI CATG 5 cut(s) 19, 148, 232, 266, 284
FokI GGATG 3 cut(s) 174, 194, 218
GsuI CTGGAG 2 cut(s) 188, 305
HaeIII GGCC 1 cut(s) 214
HgaI GACGC 1 cut(s) 5
Hin1II CATG 5 cut(s) 23, 152, 236, 270, 288
HinfI GANTC 3 cut(s) 64, 134, 377
HphI GGTGA 2 cut(s) 209, 365
Hpy188I TCNGA 3 cut(s) 259, 385, 392
Hpy188III TCNNGA 2 cut(s) 20, 149
HpyAV CCTTC 1 cut(s) 365
HpyCH4III ACNGT 2 cut(s) 225, 353
HpyCH4IV ACGT 1 cut(s) 6
HpyCH4V TGCA 2 cut(s) 4, 367
HpySE526I ACGT 1 cut(s) 6
Hsp92II CATG 5 cut(s) 23, 152, 236, 270, 288
LpnPI CCDG 5 cut(s) 152, 231, 308, 313, 335
MaeII ACGT 1 cut(s) 6
MaeIII GTNAC 1 cut(s) 353
MboII GAAGA 3 cut(s) 67, 320, 372
MlyI GAGTC 1 cut(s) 128
MmeI TCCRAC 1 cut(s) 171
MnlI CCTC 3 cut(s) 151, 163, 187
MseI TTAA 1 cut(s) 33
MslI CAYNNNNRTG 1 cut(s) 24
MspR9I CCNGG 1 cut(s) 323
MvaI CCWGG 1 cut(s) 323
NcoI CCATGG 1 cut(s) 284
NlaIII CATG 5 cut(s) 23, 152, 236, 270, 288
NmuCI GTSAC 1 cut(s) 353
PagI TCATGA 2 cut(s) 19, 148
PfeI GAWTC 2 cut(s) 64, 377
PflFI GACNNNGTC 1 cut(s) 137
PleI GAGTC 1 cut(s) 128
PpsI GAGTC 1 cut(s) 128
PshAI GACNNNNGTC 1 cut(s) 90
Psp6I CCWGG 1 cut(s) 321
PspGI CCWGG 1 cut(s) 321
PspPI GGNCC 1 cut(s) 212
PsyI GACNNNGTC 1 cut(s) 137
RseI CAYNNNNRTG 1 cut(s) 24
SaqAI TTAA 1 cut(s) 33
Sau96I GGNCC 1 cut(s) 212
SchI GAGTC 1 cut(s) 128
ScrFI CCNGG 1 cut(s) 323
SetI ASST 2 cut(s) 9, 327
SmiMI CAYNNNNRTG 1 cut(s) 24
SmlI CTYRAG 1 cut(s) 112
SmoI CTYRAG 1 cut(s) 112
SsiI CCGC 1 cut(s) 237
StyD4I CCNGG 1 cut(s) 321
StyI CCWWGG 1 cut(s) 284
TaaI ACNGT 2 cut(s) 225, 353
TaiI ACGT 1 cut(s) 9
TfiI GAWTC 2 cut(s) 64, 377
Tru1I TTAA 1 cut(s) 33
Tru9I TTAA 1 cut(s) 33
TseFI GTSAC 1 cut(s) 353
Tsp45I GTSAC 1 cut(s) 353
TspDTI ATGAA 2 cut(s) 36, 137
Tth111I GACNNNGTC 1 cut(s) 137
XcmI CCANNNNNNNNNTGG 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.