Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8247185.1

Orthogroup ID

OG0005006

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 523

Gene Structure 523 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8247185.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 226 bp

aattgatgaggagcaaacaccagaagatgcggaagatggacccccagagttgctttttattcatggtggtcacaccagtaaaatatctgatttttcttggaatccatgtgaagattgggttatatctagtgttgctgaagataacatactgcagatctggcagatggcggagaatatataccatgatgaagatgatttacctgaagaaccggcaaagcagccttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0005737 GO:0006139 GO:0006323 GO:0006325 GO:0006333 GO:0006338 GO:0006349 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008283 GO:0009507 GO:0009536 GO:0009555 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009909 GO:0009987 GO:0010026 GO:0010154 GO:0010214 GO:0010468 GO:0016043 GO:0017053 GO:0019219 GO:0019222 GO:0022414 GO:0022607 GO:0030154 GO:0031323 GO:0031461 GO:0031497 GO:0031507 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0040029 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045787 GO:0046483 GO:0048229 GO:0048316 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048580 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051276 GO:0051726 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070828 GO:0071103 GO:0071514 GO:0071704 GO:0071840 GO:0080008 GO:0080090 GO:0090558 GO:0090568 GO:0099402 GO:1901360 GO:1902494 GO:1990234 GO:2000026 GO:2000241 GO:2000653

KEGG Pathways

Metabolic & Signaling

ko04218 map04218

Pfam Domains

Protein Families

CAF1C_H4-bd WD40

Protein Analysis

74

Amino Acids

8.46

Weight (kDa)

4.05

Isoelectric Point (pI)

80.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005006)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16780 AT4G35050
fragaria_vesca	FvH4_2g01180
malus_domestica	MD05G1121700.v1.1 MD10G1124300.v1.1
prunus_persica	Prupe.8G165500_v2.0.a1
pyrus_communis	pycom05g11570
rosa_chinensis	RchiOBHm_Chr6g0251791 RchiOBHm_Chr6g0251811
rosa_laevigata	RLG00000015428 RLG00000015429
rosa_multiflora	Rmu_co8247185.1_g000001 Rmu_co8464529.1_g000001 Rmu_sc0003965.1_g000001 Rmu_sc0019305.1_g000001 Rmu_sc0025272.1_g000001 Rmu_ssc0000213.1_g000115 Rmu_ssc0000213.1_g000116
rosa_roxburghii	Rroxscaffold_7G00216370 Rroxscaffold_7G00216380
rosa_rugosa	Rorug05G0504000
rosa_samantha	Rh6AG014800 Rh6AG014900 Rh6BG013200 Rh6BG013300 Rh6CG010200 Rh6CG010300 Rh6DG011400 Rh6DG011500
rosa_wichuraiana	Rw6G001470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	30, 168
AcuI	CTGAAG	2 cut(s)	157, 223
ApeKI	GCWGC	1 cut(s)	218
AspS9I	GGNCC	1 cut(s)	39
AvaII	GGWCC	1 cut(s)	39
BarI	GAAGNNNNNNTAC	4 cut(s)	130, 162, 181, 213
BccI	CCATC	2 cut(s)	30, 158
BfaI	CTAG	1 cut(s)	127
BfmI	CTRYAG	1 cut(s)	150
BglII	AGATCT	1 cut(s)	154
BisI	GCNGC	1 cut(s)	219
BlsI	GCNGC	1 cut(s)	220
Bme18I	GGWCC	1 cut(s)	39
BmgT120I	GGNCC	1 cut(s)	39
BmiI	GGNNCC	1 cut(s)	41
BmsI	GCATC	1 cut(s)	17
Bse118I	RCCGGY	1 cut(s)	209
Bse1I	ACTGG	1 cut(s)	76
BseNI	ACTGG	1 cut(s)	76
BseRI	GAGGAG	1 cut(s)	24
BsiSI	CCGG	1 cut(s)	210
Bsp143I	GATC	1 cut(s)	154
BspACI	CCGC	2 cut(s)	30, 168
BspLI	GGNNCC	1 cut(s)	41
BspMAI	CTGCAG	1 cut(s)	154
BsrFI	RCCGGY	1 cut(s)	209
BsrI	ACTGG	1 cut(s)	76
BssAI	RCCGGY	1 cut(s)	209
BssMI	GATC	1 cut(s)	154
BstDEI	CTNAG	1 cut(s)	223
BstKTI	GATC	1 cut(s)	157
BstMBI	GATC	1 cut(s)	154
BstMWI	GCNNNNNNNGC	1 cut(s)	158
BstSFI	CTRYAG	1 cut(s)	150
BstX2I	RGATCY	1 cut(s)	154
BstYI	RGATCY	1 cut(s)	154
Cfr10I	RCCGGY	1 cut(s)	209
Cfr13I	GGNCC	1 cut(s)	39
CviAII	CATG	3 cut(s)	63, 106, 183
CviJI	RGCY	1 cut(s)	221
CviKI_1	RGCY	1 cut(s)	221
DdeI	CTNAG	1 cut(s)	223
DpnI	GATC	1 cut(s)	156
DpnII	GATC	1 cut(s)	154
EciI	GGCGGA	1 cut(s)	183
Eco47I	GGWCC	1 cut(s)	39
Eco57I	CTGAAG	2 cut(s)	157, 223
FaeI	CATG	3 cut(s)	66, 109, 186
FaiI	YATR	7 cut(s)	64, 107, 123, 147, 177, 179, 184
FatI	CATG	3 cut(s)	62, 105, 182
Fnu4HI	GCNGC	1 cut(s)	219
Fsp4HI	GCNGC	1 cut(s)	219
FspBI	CTAG	1 cut(s)	127
GluI	GCNGC	1 cut(s)	219
HapII	CCGG	1 cut(s)	210
Hin1II	CATG	3 cut(s)	66, 109, 186
HinfI	GANTC	1 cut(s)	101
HpaII	CCGG	1 cut(s)	210
Hpy188I	TCNGA	1 cut(s)	89
HpyCH4V	TGCA	1 cut(s)	152
HpyF10VI	GCNNNNNNNGC	1 cut(s)	158
HpyF3I	CTNAG	1 cut(s)	223
Hsp92II	CATG	3 cut(s)	66, 109, 186
Kzo9I	GATC	1 cut(s)	154
LmnI	GCTCC	1 cut(s)	11
LpnPI	CCDG	5 cut(s)	34, 58, 89, 143, 214
LweI	GCATC	1 cut(s)	17
MaeI	CTAG	1 cut(s)	127
MaeIII	GTNAC	1 cut(s)	69
MalI	GATC	1 cut(s)	156
MboI	GATC	1 cut(s)	154
MboII	GAAGA	6 cut(s)	36, 45, 123, 150, 201, 216
MflI	RGATCY	1 cut(s)	154
MspI	CCGG	1 cut(s)	210
MwoI	GCNNNNNNNGC	1 cut(s)	158
NdeII	GATC	1 cut(s)	154
NlaIII	CATG	3 cut(s)	66, 109, 186
NlaIV	GGNNCC	1 cut(s)	41
NmuCI	GTSAC	1 cut(s)	69
PfeI	GAWTC	1 cut(s)	101
PkrI	GCNGC	1 cut(s)	220
PspN4I	GGNNCC	1 cut(s)	41
PspPI	GGNCC	1 cut(s)	39
PstI	CTGCAG	1 cut(s)	154
PsuI	RGATCY	1 cut(s)	154
SatI	GCNGC	1 cut(s)	219
Sau3AI	GATC	1 cut(s)	154
Sau96I	GGNCC	1 cut(s)	39
SetI	ASST	1 cut(s)	203
SfaNI	GCATC	1 cut(s)	17
SfcI	CTRYAG	1 cut(s)	150
SinI	GGWCC	1 cut(s)	39
SsiI	CCGC	2 cut(s)	30, 168
SspMI	CTAG	1 cut(s)	127
TfiI	GAWTC	1 cut(s)	101
TseFI	GTSAC	1 cut(s)	69
TseI	GCWGC	1 cut(s)	218
Tsp45I	GTSAC	1 cut(s)	69
TspDTI	ATGAA	2 cut(s)	51, 202
VpaK11BI	GGWCC	1 cut(s)	39
XcmI	CCANNNNNNNNNTGG	1 cut(s)	112
XspI	CTAG	1 cut(s)	127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.