Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019305.1

Orthogroup ID

OG0005006

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 334

Gene Structure 334 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019305.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 216 bp

gtccacgaaggtgttgtagaagatgtagcatggcatttgaggcatgaatatttattcggttctgttggtgatgatcaataccttctgatatgggatctccggactccatcagttaccaagcctgtccaatctgtagttgctcatcaaagtgaggtgagtgatgtgaatatccttctccccttcaccctctcatttaaatggacagcattgctatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0005737 GO:0006139 GO:0006323 GO:0006325 GO:0006333 GO:0006338 GO:0006349 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008283 GO:0009507 GO:0009536 GO:0009555 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009909 GO:0009987 GO:0010026 GO:0010154 GO:0010214 GO:0010468 GO:0016043 GO:0017053 GO:0019219 GO:0019222 GO:0022414 GO:0022607 GO:0030154 GO:0031323 GO:0031461 GO:0031497 GO:0031507 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0040029 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045787 GO:0046483 GO:0048229 GO:0048316 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048580 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051276 GO:0051726 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070828 GO:0071103 GO:0071514 GO:0071704 GO:0071840 GO:0080008 GO:0080090 GO:0090558 GO:0090568 GO:0099402 GO:1901360 GO:1902494 GO:1990234 GO:2000026 GO:2000241 GO:2000653

KEGG Pathways

Metabolic & Signaling

ko04218 map04218

Pfam Domains

Protein Families

CAF1C_H4-bd WD40

Protein Analysis

71

Amino Acids

8.1

Weight (kDa)

5.01

Isoelectric Point (pI)

48.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005006)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16780 AT4G35050
fragaria_vesca	FvH4_2g01180
malus_domestica	MD05G1121700.v1.1 MD10G1124300.v1.1
prunus_persica	Prupe.8G165500_v2.0.a1
pyrus_communis	pycom05g11570
rosa_chinensis	RchiOBHm_Chr6g0251791 RchiOBHm_Chr6g0251811
rosa_laevigata	RLG00000015428 RLG00000015429
rosa_multiflora	Rmu_co8247185.1_g000001 Rmu_co8464529.1_g000001 Rmu_sc0003965.1_g000001 Rmu_sc0019305.1_g000001 Rmu_sc0025272.1_g000001 Rmu_ssc0000213.1_g000115 Rmu_ssc0000213.1_g000116
rosa_roxburghii	Rroxscaffold_7G00216370 Rroxscaffold_7G00216380
rosa_rugosa	Rorug05G0504000
rosa_samantha	Rh6AG014800 Rh6AG014900 Rh6BG013200 Rh6BG013300 Rh6CG010200 Rh6CG010300 Rh6DG011400 Rh6DG011500
rosa_wichuraiana	Rw6G001470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	99
AclWI	GGATC	1 cut(s)	102
AleI	CACNNNNGTG	1 cut(s)	9
AlwI	GGATC	1 cut(s)	102
Aor13HI	TCCGGA	1 cut(s)	99
AsuHPI	GGTGA	3 cut(s)	80, 166, 175
BccI	CCATC	1 cut(s)	115
BclI	TGATCA	1 cut(s)	73
BfmI	CTRYAG	2 cut(s)	132, 212
BsaWI	WCCGGW	1 cut(s)	99
Bse3DI	GCAATG	1 cut(s)	206
BseAI	TCCGGA	1 cut(s)	99
BseMI	GCAATG	1 cut(s)	206
BsiSI	CCGG	1 cut(s)	100
Bsp13I	TCCGGA	1 cut(s)	99
Bsp143I	GATC	2 cut(s)	73, 94
BspEI	TCCGGA	1 cut(s)	99
BspPI	GGATC	1 cut(s)	102
BsrDI	GCAATG	1 cut(s)	206
BssMI	GATC	2 cut(s)	73, 94
BstKTI	GATC	2 cut(s)	76, 97
BstMBI	GATC	2 cut(s)	73, 94
BstMWI	GCNNNNNNNGC	1 cut(s)	40
BstSFI	CTRYAG	2 cut(s)	132, 212
BstX2I	RGATCY	1 cut(s)	94
BstYI	RGATCY	1 cut(s)	94
CviAII	CATG	2 cut(s)	30, 44
CviJI	RGCY	1 cut(s)	121
CviKI_1	RGCY	1 cut(s)	121
DpnI	GATC	2 cut(s)	75, 96
DpnII	GATC	2 cut(s)	73, 94
DraI	TTTAAA	1 cut(s)	196
FaeI	CATG	2 cut(s)	33, 47
FaiI	YATR	4 cut(s)	31, 45, 91, 214
FatI	CATG	2 cut(s)	29, 43
FbaI	TGATCA	1 cut(s)	73
HapII	CCGG	1 cut(s)	100
Hin1II	CATG	2 cut(s)	33, 47
HinfI	GANTC	1 cut(s)	103
HpaII	CCGG	1 cut(s)	100
HphI	GGTGA	3 cut(s)	80, 166, 175
Hpy166II	GTNNAC	1 cut(s)	4
Hpy188I	TCNGA	1 cut(s)	87
Hpy188III	TCNNGA	1 cut(s)	100
Hpy8I	GTNNAC	1 cut(s)	4
HpyAV	CCTTC	3 cut(s)	92, 182, 190
HpyF10VI	GCNNNNNNNGC	1 cut(s)	40
Hsp92II	CATG	2 cut(s)	33, 47
Kpn2I	TCCGGA	1 cut(s)	99
Ksp22I	TGATCA	1 cut(s)	73
Kzo9I	GATC	2 cut(s)	73, 94
LpnPI	CCDG	2 cut(s)	113, 135
MaeIII	GTNAC	1 cut(s)	112
MalI	GATC	2 cut(s)	75, 96
MboI	GATC	2 cut(s)	73, 94
MboII	GAAGA	1 cut(s)	32
MflI	RGATCY	1 cut(s)	94
MlyI	GAGTC	1 cut(s)	97
MnlI	CCTC	3 cut(s)	33, 145, 197
MroI	TCCGGA	1 cut(s)	99
MseI	TTAA	1 cut(s)	195
MslI	CAYNNNNRTG	3 cut(s)	9, 147, 196
MspI	CCGG	1 cut(s)	100
MwoI	GCNNNNNNNGC	1 cut(s)	40
NdeII	GATC	2 cut(s)	73, 94
NlaIII	CATG	2 cut(s)	33, 47
OliI	CACNNNNGTG	1 cut(s)	9
PleI	GAGTC	1 cut(s)	97
PpsI	GAGTC	1 cut(s)	97
PsuI	RGATCY	1 cut(s)	94
RseI	CAYNNNNRTG	3 cut(s)	9, 147, 196
SaqAI	TTAA	1 cut(s)	195
Sau3AI	GATC	2 cut(s)	73, 94
SchI	GAGTC	1 cut(s)	97
SetI	ASST	3 cut(s)	13, 84, 156
SfcI	CTRYAG	2 cut(s)	132, 212
SgeI	CNNG	6 cut(s)	17, 42, 56, 112, 130, 134
SmiI	ATTTAAAT	1 cut(s)	196
SmiMI	CAYNNNNRTG	3 cut(s)	9, 147, 196
SspI	AATATT	1 cut(s)	50
SwaI	ATTTAAAT	1 cut(s)	196
Tru1I	TTAA	1 cut(s)	195
Tru9I	TTAA	1 cut(s)	195
TspDTI	ATGAA	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.