RchiOBHm_Chr6g0251811

WD-40 repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0005006
Physical Location & Seq
Forward (+)
7075367 .. 7075874
508 bp
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UTR
Exon/CDS
Intron
PRQ22574

Sequence Viewer

Length: 204 bp
ATGCATGTTTTTGAGCGTCATGAAAGTGTGGTTAATGATGTGTCGTGGCATTTGAAGAACGAGAATCTGTTTGGGTCTTTTGGGGACGATTGTCCATTGATGATATGGGACTTGAGAACAAATCAAGCCCAAGACTCTGTCAAAGTTCATGAGAAAGAGGATTTGCATGGTTCTCACTGCCATTCTATAAATGTTCAAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0031461 GO:0032991 GO:0044424 GO:0044444 GO:0044464 GO:0080008 GO:1902494 GO:1990234
KEGG Pathways
Metabolic & Signaling
ko04218 map04218
Pfam Domains
Protein Families
CAF1C_H4-bd WD40

Protein Analysis

67

Amino Acids

7.78

Weight (kDa)

5.47

Isoelectric Point (pI)

45.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_THOC3 PF25174 4 - 52 7e-07 THOC3 beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 2 cut(s) 55, 197
BoxI GACNNNNGTC 1 cut(s) 90
BpuEI CTTGAG 1 cut(s) 133
BslFI GGGAC 2 cut(s) 98, 122
BsmFI GGGAC 2 cut(s) 98, 122
BspHI TCATGA 2 cut(s) 19, 148
BstNSI RCATGY 1 cut(s) 8
BstPAI GACNNNNGTC 1 cut(s) 90
BtsI GCAGTG 1 cut(s) 175
BtsIMutI CAGTG 1 cut(s) 175
CciI TCATGA 2 cut(s) 19, 148
CseI GACGC 1 cut(s) 5
CviAII CATG 4 cut(s) 5, 20, 149, 167
CviJI RGCY 1 cut(s) 128
CviKI_1 RGCY 1 cut(s) 128
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 4 cut(s) 8, 23, 152, 170
FaiI YATR 6 cut(s) 6, 21, 106, 150, 168, 188
FaqI GGGAC 2 cut(s) 98, 122
FatI CATG 4 cut(s) 4, 19, 148, 166
HgaI GACGC 1 cut(s) 5
Hin1II CATG 4 cut(s) 8, 23, 152, 170
HinfI GANTC 2 cut(s) 64, 134
Hpy188III TCNNGA 2 cut(s) 20, 149
HpyCH4V TGCA 2 cut(s) 4, 166
Hsp92II CATG 4 cut(s) 8, 23, 152, 170
MboII GAAGA 1 cut(s) 67
MlyI GAGTC 1 cut(s) 128
MnlI CCTC 1 cut(s) 151
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 1 cut(s) 33
MslI CAYNNNNRTG 1 cut(s) 24
NlaIII CATG 4 cut(s) 8, 23, 152, 170
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 8
PagI TCATGA 2 cut(s) 19, 148
PfeI GAWTC 1 cut(s) 64
PflFI GACNNNGTC 1 cut(s) 137
PleI GAGTC 1 cut(s) 128
PpsI GAGTC 1 cut(s) 128
PshAI GACNNNNGTC 1 cut(s) 90
PsyI GACNNNGTC 1 cut(s) 137
RseI CAYNNNNRTG 1 cut(s) 24
SaqAI TTAA 1 cut(s) 33
SchI GAGTC 1 cut(s) 128
SgeI CNNG 9 cut(s) 17, 32, 57, 73, 124, 137, 143, 161, 179
SmiMI CAYNNNNRTG 1 cut(s) 24
SmlI CTYRAG 1 cut(s) 112
SmoI CTYRAG 1 cut(s) 112
TfiI GAWTC 1 cut(s) 64
Tru1I TTAA 1 cut(s) 33
Tru9I TTAA 1 cut(s) 33
TscAI CASTG 1 cut(s) 182
TspDTI ATGAA 2 cut(s) 36, 137
TspRI CASTG 1 cut(s) 182
Tth111I GACNNNGTC 1 cut(s) 137
XceI RCATGY 1 cut(s) 8
XcmI CCANNNNNNNNNTGG 1 cut(s) 102
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.