Rh6DG011500

WD-40 repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0005006
Physical Location & Seq
Forward (+)
1124231 .. 1124491
261 bp
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UTR
Exon/CDS
Intron
Rh6DG011500.1

Sequence Viewer

Length: 150 bp
ATGCATATTTTTGAGCGTCATGAAAGTGTGGTTAATGATGTGTCGTGGCATTCGAAGATCGAGAATCTGTTTGGGTCTGTTGGGGACGATTGTCAATTGATGATATGGGACTTGAGAACAAATCAAGCCCAAGACTGTCAAAGTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0031461 GO:0032991 GO:0044424 GO:0044444 GO:0044464 GO:0080008 GO:1902494 GO:1990234
KEGG Pathways
Metabolic & Signaling
ko04218 map04218
Pfam Domains
Protein Families
CAF1C_H4-bd WD40

Protein Analysis

49

Amino Acids

5.71

Weight (kDa)

4.68

Isoelectric Point (pI)

61.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_THOC3 PF25174 4 - 43 6e-06 THOC3 beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AsuII TTCGAA 1 cut(s) 53
BoxI GACNNNNGTC 1 cut(s) 90
Bpu14I TTCGAA 1 cut(s) 53
BpuEI CTTGAG 1 cut(s) 133
BslFI GGGAC 2 cut(s) 98, 122
BsmFI GGGAC 2 cut(s) 98, 122
BsmI GAATGC 1 cut(s) 49
Bsp119I TTCGAA 1 cut(s) 53
Bsp143I GATC 1 cut(s) 57
BspHI TCATGA 2 cut(s) 19, 146
BspT104I TTCGAA 1 cut(s) 53
BssMI GATC 1 cut(s) 57
Bst4CI ACNGT 1 cut(s) 137
BstBI TTCGAA 1 cut(s) 53
BstKTI GATC 1 cut(s) 60
BstMBI GATC 1 cut(s) 57
BstPAI GACNNNNGTC 1 cut(s) 90
CciI TCATGA 2 cut(s) 19, 146
CseI GACGC 1 cut(s) 5
CviAII CATG 2 cut(s) 20, 147
CviJI RGCY 1 cut(s) 128
CviKI_1 RGCY 1 cut(s) 128
DpnI GATC 1 cut(s) 59
DpnII GATC 1 cut(s) 57
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 2 cut(s) 23, 150
FaiI YATR 4 cut(s) 6, 21, 106, 148
FaqI GGGAC 2 cut(s) 98, 122
FatI CATG 2 cut(s) 19, 146
HgaI GACGC 1 cut(s) 5
Hin1II CATG 2 cut(s) 23, 150
HinfI GANTC 1 cut(s) 64
Hpy188III TCNNGA 3 cut(s) 20, 61, 147
HpyCH4III ACNGT 1 cut(s) 137
HpyCH4V TGCA 1 cut(s) 4
Hsp92II CATG 2 cut(s) 23, 150
Kzo9I GATC 1 cut(s) 57
MalI GATC 1 cut(s) 59
MboI GATC 1 cut(s) 57
MboII GAAGA 1 cut(s) 67
MfeI CAATTG 1 cut(s) 95
MluCI AATT 1 cut(s) 95
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 1 cut(s) 33
MslI CAYNNNNRTG 1 cut(s) 24
MunI CAATTG 1 cut(s) 95
Mva1269I GAATGC 1 cut(s) 49
NdeII GATC 1 cut(s) 57
NlaIII CATG 2 cut(s) 23, 150
NsiI ATGCAT 1 cut(s) 6
NspV TTCGAA 1 cut(s) 53
PagI TCATGA 2 cut(s) 19, 146
PcsI WCGNNNNNNNCGW 1 cut(s) 50
PctI GAATGC 1 cut(s) 49
PfeI GAWTC 1 cut(s) 64
PshAI GACNNNNGTC 1 cut(s) 90
RseI CAYNNNNRTG 1 cut(s) 24
SaqAI TTAA 1 cut(s) 33
Sau3AI GATC 1 cut(s) 57
SfuI TTCGAA 1 cut(s) 53
SgeI CNNG 6 cut(s) 32, 57, 73, 124, 137, 143
SmiMI CAYNNNNRTG 1 cut(s) 24
SmlI CTYRAG 1 cut(s) 112
SmoI CTYRAG 1 cut(s) 112
Sse9I AATT 1 cut(s) 95
TaaI ACNGT 1 cut(s) 137
TaqI TCGA 2 cut(s) 53, 60
TasI AATT 1 cut(s) 95
TfiI GAWTC 1 cut(s) 64
Tru1I TTAA 1 cut(s) 33
Tru9I TTAA 1 cut(s) 33
TspDTI ATGAA 2 cut(s) 36, 135
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.