Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0025272.1

Orthogroup ID

OG0005006

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1890

Gene Structure 1890 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0025272.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 350 bp

catggcatttgaggcatgaatatttattcggttctgttggtgatgatcaataccttctgatatgggatctccggactccatcagttaccaagcctgtccaatctgtagttgctcatcaaagtgaggtcaactgtttggctttcaatccctttaatgaatgggtggttgcaactgggtccactgacaaaactgtcaagctgtttgatctacgcaaaatcagtaccgctctccacacctttgattgccataaggaggaggttttccaagtcggttggaatccgaagaatgagactatcttagcttcttgttgtcttggcaggagactgatggtgtgggatcttagcaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0005737 GO:0006139 GO:0006323 GO:0006325 GO:0006333 GO:0006338 GO:0006349 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008283 GO:0009507 GO:0009536 GO:0009555 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009909 GO:0009987 GO:0010026 GO:0010154 GO:0010214 GO:0010468 GO:0016043 GO:0017053 GO:0019219 GO:0019222 GO:0022414 GO:0022607 GO:0030154 GO:0031323 GO:0031461 GO:0031497 GO:0031507 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0040029 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045787 GO:0046483 GO:0048229 GO:0048316 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048580 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051276 GO:0051726 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070828 GO:0071103 GO:0071514 GO:0071704 GO:0071840 GO:0080008 GO:0080090 GO:0090558 GO:0090568 GO:0099402 GO:1901360 GO:1902494 GO:1990234 GO:2000026 GO:2000241 GO:2000653

KEGG Pathways

Metabolic & Signaling

ko04218 map04218

Pfam Domains

Protein Families

CAF1C_H4-bd WD40

Protein Analysis

115

Amino Acids

13.29

Weight (kDa)

6.56

Isoelectric Point (pI)

49.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005006)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16780 AT4G35050
fragaria_vesca	FvH4_2g01180
malus_domestica	MD05G1121700.v1.1 MD10G1124300.v1.1
prunus_persica	Prupe.8G165500_v2.0.a1
pyrus_communis	pycom05g11570
rosa_chinensis	RchiOBHm_Chr6g0251791 RchiOBHm_Chr6g0251811
rosa_laevigata	RLG00000015428 RLG00000015429
rosa_multiflora	Rmu_co8247185.1_g000001 Rmu_co8464529.1_g000001 Rmu_sc0003965.1_g000001 Rmu_sc0019305.1_g000001 Rmu_sc0025272.1_g000001 Rmu_ssc0000213.1_g000115 Rmu_ssc0000213.1_g000116
rosa_roxburghii	Rroxscaffold_7G00216370 Rroxscaffold_7G00216380
rosa_rugosa	Rorug05G0504000
rosa_samantha	Rh6AG014800 Rh6AG014900 Rh6BG013200 Rh6BG013300 Rh6CG010200 Rh6CG010300 Rh6DG011400 Rh6DG011500
rosa_wichuraiana	Rw6G001470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	190
Acc36I	ACCTGC	1 cut(s)	335
AccBSI	CCGCTC	1 cut(s)	226
AccIII	TCCGGA	1 cut(s)	71
AciI	CCGC	1 cut(s)	224
AclWI	GGATC	2 cut(s)	74, 344
AfaI	GTAC	1 cut(s)	222
AfiI	CCNNNNNNNGG	1 cut(s)	252
AgsI	TTSAA	1 cut(s)	144
AluBI	AGCT	2 cut(s)	198, 301
AluI	AGCT	2 cut(s)	198, 301
Alw26I	GTCTC	2 cut(s)	283, 315
AlwI	GGATC	2 cut(s)	74, 344
Aor13HI	TCCGGA	1 cut(s)	71
AspS9I	GGNCC	1 cut(s)	176
AsuHPI	GGTGA	1 cut(s)	52
AvaII	GGWCC	1 cut(s)	176
BccI	CCATC	2 cut(s)	87, 321
BclI	TGATCA	1 cut(s)	45
BcoDI	GTCTC	2 cut(s)	283, 315
BfmI	CTRYAG	1 cut(s)	104
BfuAI	ACCTGC	1 cut(s)	335
Bme18I	GGWCC	1 cut(s)	176
BmgT120I	GGNCC	1 cut(s)	176
BmiI	GGNNCC	1 cut(s)	177
BmrI	ACTGGG	1 cut(s)	182
BmuI	ACTGGG	1 cut(s)	182
BsaWI	WCCGGW	1 cut(s)	71
Bsc4I	CCNNNNNNNGG	1 cut(s)	252
Bse1I	ACTGG	1 cut(s)	177
BseAI	TCCGGA	1 cut(s)	71
BseLI	CCNNNNNNNGG	1 cut(s)	252
BseNI	ACTGG	1 cut(s)	177
BseRI	GAGGAG	1 cut(s)	268
BsiSI	CCGG	1 cut(s)	72
BslI	CCNNNNNNNGG	1 cut(s)	252
BsmAI	GTCTC	2 cut(s)	283, 315
Bsp13I	TCCGGA	1 cut(s)	71
Bsp143I	GATC	4 cut(s)	45, 66, 204, 336
BspACI	CCGC	1 cut(s)	224
BspEI	TCCGGA	1 cut(s)	71
BspLI	GGNNCC	1 cut(s)	177
BspMI	ACCTGC	1 cut(s)	335
BspPI	GGATC	2 cut(s)	74, 344
BsrBI	CCGCTC	1 cut(s)	226
BsrI	ACTGG	1 cut(s)	177
BssMI	GATC	4 cut(s)	45, 66, 204, 336
Bst4CI	ACNGT	2 cut(s)	133, 192
BstDEI	CTNAG	2 cut(s)	297, 340
BstKTI	GATC	4 cut(s)	48, 69, 207, 339
BstMAI	GTCTC	2 cut(s)	283, 315
BstMBI	GATC	4 cut(s)	45, 66, 204, 336
BstMWI	GCNNNNNNNGC	1 cut(s)	12
BstSFI	CTRYAG	1 cut(s)	104
BstX2I	RGATCY	2 cut(s)	66, 336
BstYI	RGATCY	2 cut(s)	66, 336
BtsIMutI	CAGTG	1 cut(s)	179
BveI	ACCTGC	1 cut(s)	335
Cfr13I	GGNCC	1 cut(s)	176
Csp6I	GTAC	1 cut(s)	221
CviAII	CATG	2 cut(s)	2, 16
CviJI	RGCY	4 cut(s)	93, 139, 198, 301
CviKI_1	RGCY	4 cut(s)	93, 139, 198, 301
CviQI	GTAC	1 cut(s)	221
DdeI	CTNAG	2 cut(s)	297, 340
DpnI	GATC	4 cut(s)	47, 68, 206, 338
DpnII	GATC	4 cut(s)	45, 66, 204, 336
DrdI	GACNNNNNNGTC	1 cut(s)	190
DseDI	GACNNNNNNGTC	1 cut(s)	190
Eco47I	GGWCC	1 cut(s)	176
FaeI	CATG	1 cut(s)	19
FaiI	YATR	4 cut(s)	3, 17, 63, 248
FatI	CATG	1 cut(s)	15
FbaI	TGATCA	1 cut(s)	45
HapII	CCGG	1 cut(s)	72
Hin1II	CATG	1 cut(s)	19
HincII	GTYRAC	1 cut(s)	129
HindII	GTYRAC	1 cut(s)	129
HinfI	GANTC	2 cut(s)	75, 276
HpaII	CCGG	1 cut(s)	72
HphI	GGTGA	1 cut(s)	52
Hpy166II	GTNNAC	2 cut(s)	129, 179
Hpy188I	TCNGA	2 cut(s)	59, 281
Hpy188III	TCNNGA	1 cut(s)	72
Hpy8I	GTNNAC	2 cut(s)	129, 179
HpyAV	CCTTC	1 cut(s)	64
HpyCH4III	ACNGT	2 cut(s)	133, 192
HpyCH4V	TGCA	1 cut(s)	169
HpyF10VI	GCNNNNNNNGC	1 cut(s)	12
HpyF3I	CTNAG	2 cut(s)	297, 340
Hsp92II	CATG	1 cut(s)	19
Kpn2I	TCCGGA	1 cut(s)	71
Ksp22I	TGATCA	1 cut(s)	45
Kzo9I	GATC	4 cut(s)	45, 66, 204, 336
LpnPI	CCDG	5 cut(s)	85, 107, 158, 303, 330
MaeIII	GTNAC	1 cut(s)	84
MalI	GATC	4 cut(s)	47, 68, 206, 338
MbiI	CCGCTC	1 cut(s)	226
MboI	GATC	4 cut(s)	45, 66, 204, 336
MboII	GAAGA	1 cut(s)	294
MflI	RGATCY	2 cut(s)	66, 336
MlyI	GAGTC	1 cut(s)	69
MmeI	TCCRAC	1 cut(s)	253
MnlI	CCTC	4 cut(s)	5, 117, 246, 249
MroI	TCCGGA	1 cut(s)	71
MseI	TTAA	1 cut(s)	152
MslI	CAYNNNNRTG	1 cut(s)	119
MspI	CCGG	1 cut(s)	72
MwoI	GCNNNNNNNGC	1 cut(s)	12
NdeII	GATC	4 cut(s)	45, 66, 204, 336
NlaIII	CATG	1 cut(s)	19
NlaIV	GGNNCC	1 cut(s)	177
PfeI	GAWTC	1 cut(s)	276
PleI	GAGTC	1 cut(s)	69
PpsI	GAGTC	1 cut(s)	69
PspN4I	GGNNCC	1 cut(s)	177
PspPI	GGNCC	1 cut(s)	176
PsuI	RGATCY	2 cut(s)	66, 336
RsaI	GTAC	1 cut(s)	222
RsaNI	GTAC	1 cut(s)	221
RseI	CAYNNNNRTG	1 cut(s)	119
SaqAI	TTAA	1 cut(s)	152
Sau3AI	GATC	4 cut(s)	45, 66, 204, 336
Sau96I	GGNCC	1 cut(s)	176
SchI	GAGTC	1 cut(s)	69
SetI	ASST	7 cut(s)	56, 128, 200, 238, 260, 303, 349
SfcI	CTRYAG	1 cut(s)	104
SinI	GGWCC	1 cut(s)	176
SmiMI	CAYNNNNRTG	1 cut(s)	119
SsiI	CCGC	1 cut(s)	224
SspI	AATATT	1 cut(s)	22
TaaI	ACNGT	2 cut(s)	133, 192
TfiI	GAWTC	1 cut(s)	276
Tru1I	TTAA	1 cut(s)	152
Tru9I	TTAA	1 cut(s)	152
TscAI	CASTG	1 cut(s)	186
TspDTI	ATGAA	2 cut(s)	32, 170
TspRI	CASTG	1 cut(s)	186
VpaK11BI	GGWCC	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.