Rroxscaffold_7G00216370

WD-40 repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0005006
Physical Location & Seq
Reverse (-)
67049633 .. 67055852
6220 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00216370.1

Sequence Viewer

Length: 507 bp
ATGAAAACTGAGAGATGGCATTATGATTCTGTGAAAACGGTCTCATATGGGTGTCGTCATGAAAGTGTGGTTAATGATGTGTCGTGGCATTCGAAGAACGAGAATCTGTTTGGGTCTGTTGAGGACGATTGTCAATTGATGATATGGGACTTGAGAACAAATCAAGCCCAAGACTCTGTCAAGGTTCATGAGAAAGAGTGGGTTTTGGCTACAGCATCTTCAGACACTACTGTGGGTCTGTTTGATATGCTGAAGCTGACGGTATGCTCTCAGTGGCCACACAGGTATTCCAGGTTGAATGGGACCCTAATCATGATACTGTGCTGGCATCTTACGCTGGAGGACAGAAGGTTGATTGTTTGGGACCTTAATAGGATTGGGGATGAGCAGTTGGAGGGAGATGGTGATGATGGGCCACCAGAACTTCTTTTTCACATGGCGGTCATAGAGCAAGGATATCAGATTTCTCATGGAACAAAGAAGTTCCATGGCTCATTTCAAGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0031461 GO:0032991 GO:0044424 GO:0044444 GO:0044464 GO:0080008 GO:1902494 GO:1990234
KEGG Pathways
Metabolic & Signaling
ko04218 map04218
Pfam Domains
Protein Families
CAF1C_H4-bd WD40

Protein Analysis

168

Amino Acids

19.48

Weight (kDa)

5.38

Isoelectric Point (pI)

37.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_THOC3 PF25174 18 - 65 1.5e-06 THOC3 beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 440
AcoI YGGCCR 1 cut(s) 275
AcuI CTGAAG 2 cut(s) 204, 272
AgsI TTSAA 2 cut(s) 298, 500
AjnI CCWGG 1 cut(s) 290
AleI CACNNNNGTG 1 cut(s) 230
AluBI AGCT 1 cut(s) 256
AluI AGCT 1 cut(s) 256
Alw26I GTCTC 1 cut(s) 46
AoxI GGCC 2 cut(s) 275, 413
AspS9I GGNCC 3 cut(s) 303, 364, 413
AsuHPI GGTGA 1 cut(s) 416
AsuII TTCGAA 1 cut(s) 92
AvaII GGWCC 2 cut(s) 303, 364
BalI TGGCCA 1 cut(s) 277
BccI CCATC 3 cut(s) 9, 395, 404
BciT130I CCWGG 1 cut(s) 292
BcoDI GTCTC 1 cut(s) 46
BfmI CTRYAG 1 cut(s) 210
Bme1390I CCNGG 1 cut(s) 292
Bme18I GGWCC 2 cut(s) 303, 364
BmgT120I GGNCC 3 cut(s) 303, 364, 413
BmiI GGNNCC 3 cut(s) 304, 305, 365
BmrFI CCNGG 1 cut(s) 292
BmsI GCATC 2 cut(s) 224, 337
BoxI GACNNNNGTC 1 cut(s) 129
BpmI CTGGAG 1 cut(s) 359
Bpu14I TTCGAA 1 cut(s) 92
BpuEI CTTGAG 1 cut(s) 172
BsaI GGTCTC 1 cut(s) 46
BsaJI CCNNGG 1 cut(s) 487
BseBI CCWGG 1 cut(s) 292
BseDI CCNNGG 1 cut(s) 487
BseGI GGATG 1 cut(s) 388
BseMII CTCAG 1 cut(s) 284
BshFI GGCC 2 cut(s) 277, 415
BslFI GGGAC 3 cut(s) 161, 316, 377
BsmAI GTCTC 1 cut(s) 46
BsmFI GGGAC 3 cut(s) 161, 316, 377
BsmI GAATGC 1 cut(s) 88
BsnI GGCC 2 cut(s) 277, 415
Bso31I GGTCTC 1 cut(s) 46
Bsp119I TTCGAA 1 cut(s) 92
Bsp19I CCATGG 1 cut(s) 487
BspACI CCGC 1 cut(s) 440
BspANI GGCC 2 cut(s) 277, 415
BspCNI CTCAG 1 cut(s) 283
BspHI TCATGA 3 cut(s) 58, 187, 312
BspLI GGNNCC 3 cut(s) 304, 305, 365
BspT104I TTCGAA 1 cut(s) 92
BspTNI GGTCTC 1 cut(s) 46
BssECI CCNNGG 1 cut(s) 487
BssT1I CCWWGG 1 cut(s) 487
Bst2UI CCWGG 1 cut(s) 292
Bst4CI ACNGT 4 cut(s) 40, 232, 262, 321
BstBI TTCGAA 1 cut(s) 92
BstC8I GCNNGC 1 cut(s) 326
BstDEI CTNAG 2 cut(s) 9, 270
BstDSI CCRYGG 1 cut(s) 487
BstF5I GGATG 1 cut(s) 388
BstMAI GTCTC 1 cut(s) 46
BstMWI GCNNNNNNNGC 1 cut(s) 334
BstNI CCWGG 1 cut(s) 292
BstPAI GACNNNNGTC 1 cut(s) 129
BstSCI CCNGG 1 cut(s) 290
BstSFI CTRYAG 1 cut(s) 210
BsuRI GGCC 2 cut(s) 277, 415
BtgI CCRYGG 1 cut(s) 487
BtsCI GGATG 1 cut(s) 388
BtsIMutI CAGTG 1 cut(s) 278
Cac8I GCNNGC 1 cut(s) 326
CciI TCATGA 3 cut(s) 58, 187, 312
Cfr13I GGNCC 3 cut(s) 303, 364, 413
CviAII CATG 6 cut(s) 59, 188, 313, 436, 470, 488
CviJI RGCY 6 cut(s) 167, 209, 256, 277, 415, 492
CviKI_1 RGCY 6 cut(s) 167, 209, 256, 277, 415, 492
DdeI CTNAG 2 cut(s) 9, 270
EaeI YGGCCR 1 cut(s) 275
Eco130I CCWWGG 1 cut(s) 487
Eco31I GGTCTC 1 cut(s) 46
Eco32I GATATC 1 cut(s) 458
Eco47I GGWCC 2 cut(s) 303, 364
Eco57I CTGAAG 2 cut(s) 204, 272
EcoO109I RGGNCCY 2 cut(s) 303, 364
EcoRII CCWGG 1 cut(s) 290
EcoRV GATATC 1 cut(s) 458
EcoT14I CCWWGG 1 cut(s) 487
ErhI CCWWGG 1 cut(s) 487
FaeI CATG 6 cut(s) 62, 191, 316, 439, 473, 491
FaqI GGGAC 3 cut(s) 161, 316, 377
FatI CATG 6 cut(s) 58, 187, 312, 435, 469, 487
FauNDI CATATG 1 cut(s) 46
FokI GGATG 1 cut(s) 395
GsuI CTGGAG 1 cut(s) 359
HaeIII GGCC 2 cut(s) 277, 415
Hin1II CATG 6 cut(s) 62, 191, 316, 439, 473, 491
HinfI GANTC 3 cut(s) 26, 103, 173
HphI GGTGA 1 cut(s) 416
Hpy188I TCNGA 2 cut(s) 223, 462
Hpy188III TCNNGA 3 cut(s) 59, 188, 313
HpyAV CCTTC 1 cut(s) 342
HpyCH4III ACNGT 4 cut(s) 40, 232, 262, 321
HpyF10VI GCNNNNNNNGC 1 cut(s) 334
HpyF3I CTNAG 2 cut(s) 9, 270
Hsp92II CATG 6 cut(s) 62, 191, 316, 439, 473, 491
KflI GGGWCCC 1 cut(s) 303
LpnPI CCDG 6 cut(s) 268, 277, 304, 310, 323, 432
LweI GCATC 2 cut(s) 224, 337
MboII GAAGA 2 cut(s) 106, 210
MfeI CAATTG 1 cut(s) 134
MlsI TGGCCA 1 cut(s) 277
MluCI AATT 1 cut(s) 134
MluNI TGGCCA 1 cut(s) 277
MlyI GAGTC 1 cut(s) 167
MmeI TCCRAC 1 cut(s) 372
MnlI CCTC 3 cut(s) 115, 334, 388
Mox20I TGGCCA 1 cut(s) 277
MscI TGGCCA 1 cut(s) 277
MseI TTAA 2 cut(s) 72, 369
MslI CAYNNNNRTG 3 cut(s) 49, 63, 230
Msp20I TGGCCA 1 cut(s) 277
MspR9I CCNGG 1 cut(s) 292
MunI CAATTG 1 cut(s) 134
Mva1269I GAATGC 1 cut(s) 88
MvaI CCWGG 1 cut(s) 292
MwoI GCNNNNNNNGC 1 cut(s) 334
NcoI CCATGG 1 cut(s) 487
NdeI CATATG 1 cut(s) 46
NlaIII CATG 6 cut(s) 62, 191, 316, 439, 473, 491
NlaIV GGNNCC 3 cut(s) 304, 305, 365
NspV TTCGAA 1 cut(s) 92
OliI CACNNNNGTG 1 cut(s) 230
PagI TCATGA 3 cut(s) 58, 187, 312
PcsI WCGNNNNNNNCGW 1 cut(s) 89
PctI GAATGC 1 cut(s) 88
PfeI GAWTC 2 cut(s) 26, 103
PflFI GACNNNGTC 1 cut(s) 176
PleI GAGTC 1 cut(s) 167
PpsI GAGTC 1 cut(s) 167
PpuMI RGGWCCY 2 cut(s) 303, 364
PshAI GACNNNNGTC 1 cut(s) 129
Psp5II RGGWCCY 2 cut(s) 303, 364
Psp6I CCWGG 1 cut(s) 290
PspGI CCWGG 1 cut(s) 290
PspN4I GGNNCC 3 cut(s) 304, 305, 365
PspPI GGNCC 3 cut(s) 303, 364, 413
PspPPI RGGWCCY 2 cut(s) 303, 364
PsyI GACNNNGTC 1 cut(s) 176
RseI CAYNNNNRTG 3 cut(s) 49, 63, 230
SaqAI TTAA 2 cut(s) 72, 369
Sau96I GGNCC 3 cut(s) 303, 364, 413
SchI GAGTC 1 cut(s) 167
ScrFI CCNGG 1 cut(s) 292
SetI ASST 6 cut(s) 186, 258, 287, 296, 353, 369
SfaNI GCATC 2 cut(s) 224, 337
SfcI CTRYAG 1 cut(s) 210
SfuI TTCGAA 1 cut(s) 92
SinI GGWCC 2 cut(s) 303, 364
SmiMI CAYNNNNRTG 3 cut(s) 49, 63, 230
SmlI CTYRAG 1 cut(s) 151
SmoI CTYRAG 1 cut(s) 151
Sse9I AATT 1 cut(s) 134
SsiI CCGC 1 cut(s) 440
StyD4I CCNGG 1 cut(s) 290
StyI CCWWGG 1 cut(s) 487
TaaI ACNGT 4 cut(s) 40, 232, 262, 321
TaqI TCGA 1 cut(s) 92
TasI AATT 1 cut(s) 134
TfiI GAWTC 2 cut(s) 26, 103
Tru1I TTAA 2 cut(s) 72, 369
Tru9I TTAA 2 cut(s) 72, 369
TscAI CASTG 1 cut(s) 278
TspDTI ATGAA 3 cut(s) 17, 75, 176
TspRI CASTG 1 cut(s) 278
Tth111I GACNNNGTC 1 cut(s) 176
VpaK11BI GGWCC 2 cut(s) 303, 364
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.