pycom05g11570

WD-40 repeat-containing protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Reverse (-)
15176403 .. 15178837
2435 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g11570.3

Sequence Viewer

Length: 1224 bp
ATGGCGGAAGACCAGGACCAAGATTCAGCTGTCTTAGAGGAAGAGTACGCCGTCTGGAAGAAGAACAGCCCTTTCCTCTACGACCTTATCATCTCTCACCCTCTCGAATGGCCGTCTCTCACCGTCCACTGGGCTCCCTCGGCGCCGCAGCCCCACACCGACCCTTCCCTCGCCGTCCACAAGCTCGTTCTTGGGACCCACACCTCCGATGACTACCCCAACTTTCTCATGGTCGCCGACGCCCTCCTCCCCACATCCCAGCCCAACTTTGGCGCCATTTCCGAAAATGACCCTGTGATGCCTAAGGTGGAAATAACGCAGAAGATTCGGGTGTTTGGGGAAGTGAATAGGGCACGATGGATGCCGCAGAAGCCGACTATTGTGGGTGCAAAGACCAGCGGTGCGGATGTATATGTGTTTGATTGTTCTAAACAAGAAGGAAAGAAGCATCAAGAGGAAGCCTGTGATCCTGATTTGAGGTTAAGGGGTCATGACAAAGAAGGGTATGGCCTGTCTTGGAGCTCTTTGAAGGAGGGTTACCTTTTGAGTGGTTCATATGATTGTAAAATTTGCTTGTGGGATGTTTCTGCTTCGGCTCAAGAGAAGGTGCTTGATCCAATCCACGTATACGAGCGTCATGAGAGTGTGGTTGGAGATGTATCGTGGCATCCGAAGAATGAGAATTTGTTTGGATCTGTTGGGGATGATTGTCAGTTGATGATATGGGACTTGCGCACAAACCAAACCCAGCATTGTGTCAAAGCTCATGAGAAAGAGGTAAATTATCTTTCTTTCAATCCGTATAATGAATGGATTTTGGCCACAGCATCTTCAGACACTACTGTTGGTCTGTTCGATATGAGAAAGCTGACAGTGCCATTGCATGTTCTGAGTACTCACGGGGAGGAAGTATTCCAGGTTGAATGGGATCCTAATCACGAAACTGTGTTGGCATCGTACGCTGACGACAGAAGGTTGATGGTTTGGGACCTCAACAGGATTGGGGATGAGCAGGCAGAGGGAGACGGCGATGACGGACCACCAGAACTTCTCTTTGTACATGGCGGTCACAAAGCAAAGATATCTGATTTCTCTTGGAACAAAAATGAGCCATGGGTCATTTCAAGCGTTTCTGAAGACAACACTCTTCAGGTTTGGCAGATTGCTGACAGCATATTTGGCGACGACGATGATGACGTGCAAGCCCAACCTTCCTGTGTGTAA
Functional Annotation

Protein Analysis

408

Amino Acids

45.89

Weight (kDa)

4.63

Isoelectric Point (pI)

36.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 734
AccB1I GGYRCC 2 cut(s) 142, 272
AccI GTMKAC 1 cut(s) 627
AciI CCGC 6 cut(s) 5, 146, 365, 399, 404, 1065
AclWI GGATC 5 cut(s) 461, 608, 700, 923, 936
AcoI YGGCCR 2 cut(s) 110, 819
AcsI RAATTY 2 cut(s) 567, 682
AcuI CTGAAG 3 cut(s) 816, 1133, 1155
AcyI GRCGYC 3 cut(s) 143, 240, 273
AfaI GTAC 4 cut(s) 47, 895, 959, 1059
AfiI CCNNNNNNNGG 2 cut(s) 129, 269
AgsI TTSAA 4 cut(s) 529, 796, 923, 1125
AjiI CACGTC 1 cut(s) 1198
AjnI CCWGG 2 cut(s) 12, 915
AluBI AGCT 5 cut(s) 29, 184, 522, 764, 868
AluI AGCT 5 cut(s) 29, 184, 522, 764, 868
Alw21I GWGCWC 1 cut(s) 524
Alw26I GTCTC 2 cut(s) 120, 1017
AlwI GGATC 5 cut(s) 461, 608, 700, 923, 936
AoxI GGCC 3 cut(s) 110, 508, 819
ApeKI GCWGC 1 cut(s) 148
ApoI RAATTY 2 cut(s) 567, 682
ArsI GACNNNNNNTTYG 2 cut(s) 1160, 1192
AspLEI GCGC 3 cut(s) 145, 275, 735
AspS9I GGNCC 4 cut(s) 16, 195, 988, 1037
AsuHPI GGTGA 2 cut(s) 89, 112
AvaII GGWCC 4 cut(s) 16, 195, 988, 1037
AxyI CCTNAGG 1 cut(s) 303
BaeGI GKGCMC 1 cut(s) 355
BalI TGGCCA 1 cut(s) 821
BamHI GGATCC 1 cut(s) 928
BanI GGYRCC 2 cut(s) 142, 272
BanII GRGCYC 2 cut(s) 136, 524
BarI GAAGNNNNNNTAC 2 cut(s) 521, 553
BbsI GAAGAC 2 cut(s) 15, 1143
Bbv12I GWGCWC 1 cut(s) 524
BbvI GCAGC 1 cut(s) 160
BccI CCATC 2 cut(s) 351, 973
BceAI ACGGC 4 cut(s) 35, 97, 158, 1042
BcgI CGANNNNNNTGC 2 cut(s) 308, 342
BciT130I CCWGG 2 cut(s) 14, 917
BcoDI GTCTC 2 cut(s) 120, 1017
BfoI RGCGCY 2 cut(s) 146, 276
BisI GCNGC 3 cut(s) 146, 149, 365
BlsI GCNGC 3 cut(s) 147, 150, 366
BmcAI AGTACT 1 cut(s) 895
Bme1390I CCNGG 2 cut(s) 14, 917
Bme18I GGWCC 4 cut(s) 16, 195, 988, 1037
BmgBI CACGTC 1 cut(s) 1198
BmgT120I GGNCC 4 cut(s) 16, 195, 988, 1037
BmiI GGNNCC 7 cut(s) 135, 144, 196, 197, 274, 930, 989
BmrFI CCNGG 2 cut(s) 14, 917
BmrI ACTGGG 1 cut(s) 139
BmsI GCATC 6 cut(s) 288, 351, 457, 676, 836, 962
BmuI ACTGGG 1 cut(s) 139
BpiI GAAGAC 2 cut(s) 15, 1143
BpuEI CTTGAG 1 cut(s) 582
BsaAI YACGTR 1 cut(s) 625
BsaBI GATNNNNATC 1 cut(s) 933
BsaHI GRCGYC 3 cut(s) 143, 240, 273
BsaJI CCNNGG 2 cut(s) 138, 1112
Bsc4I CCNNNNNNNGG 2 cut(s) 129, 269
Bse1I ACTGG 1 cut(s) 134
Bse21I CCTNAGG 1 cut(s) 303
Bse3DI GCAATG 1 cut(s) 878
Bse8I GATNNNNATC 1 cut(s) 933
BseBI CCWGG 2 cut(s) 14, 917
BseDI CCNNGG 2 cut(s) 138, 1112
BseGI GGATG 7 cut(s) 254, 366, 412, 586, 667, 709, 1012
BseJI GATNNNNATC 1 cut(s) 933
BseLI CCNNNNNNNGG 2 cut(s) 129, 269
BseMI GCAATG 1 cut(s) 878
BseMII CTCAG 1 cut(s) 881
BseNI ACTGG 1 cut(s) 134
BseRI GAGGAG 1 cut(s) 236
BseSI GKGCMC 1 cut(s) 355
BseXI GCAGC 1 cut(s) 160
BseYI CCCAGC 2 cut(s) 258, 747
BshFI GGCC 3 cut(s) 112, 510, 821
BshNI GGYRCC 2 cut(s) 142, 272
BsiHKAI GWGCWC 1 cut(s) 524
BsiWI CGTACG 1 cut(s) 957
BslFI GGGAC 3 cut(s) 208, 740, 1001
BslI CCNNNNNNNGG 2 cut(s) 129, 269
BsmAI GTCTC 2 cut(s) 120, 1017
BsmBI CGTCTC 2 cut(s) 120, 1017
BsmFI GGGAC 3 cut(s) 208, 740, 1001
BsnI GGCC 3 cut(s) 112, 510, 821
Bsp1286I GDGCHC 3 cut(s) 136, 355, 524
Bsp1407I TGTACA 1 cut(s) 1057
Bsp143I GATC 4 cut(s) 466, 613, 692, 928
Bsp19I CCATGG 1 cut(s) 1112
BspACI CCGC 6 cut(s) 5, 146, 365, 399, 404, 1065
BspANI GGCC 3 cut(s) 112, 510, 821
BspCNI CTCAG 1 cut(s) 882
BspHI TCATGA 3 cut(s) 490, 637, 766
BspLI GGNNCC 7 cut(s) 135, 144, 196, 197, 274, 930, 989
BspPI GGATC 5 cut(s) 461, 608, 700, 923, 936
BspT107I GGYRCC 2 cut(s) 142, 272
BsrDI GCAATG 1 cut(s) 878
BsrGI TGTACA 1 cut(s) 1057
BsrI ACTGG 1 cut(s) 134
BssECI CCNNGG 2 cut(s) 138, 1112
BssMI GATC 4 cut(s) 466, 613, 692, 928
BssNAI GTATAC 1 cut(s) 628
BssNI GRCGYC 3 cut(s) 143, 240, 273
BssT1I CCWWGG 1 cut(s) 1112
Bst1107I GTATAC 1 cut(s) 628
Bst2UI CCWGG 2 cut(s) 14, 917
Bst4CI ACNGT 4 cut(s) 124, 844, 874, 946
Bst6I CTCTTC 2 cut(s) 36, 1152
BstACI GRCGYC 3 cut(s) 143, 240, 273
BstAUI TGTACA 1 cut(s) 1057
BstBAI YACGTR 1 cut(s) 625
BstC8I GCNNGC 2 cut(s) 1014, 1203
BstDEI CTNAG 3 cut(s) 34, 303, 890
BstDSI CCRYGG 1 cut(s) 1112
BstEII GGTNACC 1 cut(s) 536
BstF5I GGATG 7 cut(s) 254, 366, 412, 586, 667, 709, 1012
BstH2I RGCGCY 2 cut(s) 146, 276
BstHHI GCGC 3 cut(s) 145, 275, 735
BstKTI GATC 4 cut(s) 469, 616, 695, 931
BstMAI GTCTC 2 cut(s) 120, 1017
BstMBI GATC 4 cut(s) 466, 613, 692, 928
BstMWI GCNNNNNNNGC 5 cut(s) 140, 370, 874, 959, 1179
BstNI CCWGG 2 cut(s) 14, 917
BstNSI RCATGY 1 cut(s) 887
BstPI GGTNACC 1 cut(s) 536
BstSCI CCNGG 2 cut(s) 12, 915
BstSLI GKGCMC 1 cut(s) 355
BstV1I GCAGC 1 cut(s) 160
BstV2I GAAGAC 2 cut(s) 15, 1143
BstX2I RGATCY 2 cut(s) 692, 928
BstYI RGATCY 2 cut(s) 692, 928
BstZ17I GTATAC 1 cut(s) 628
Bsu36I CCTNAGG 1 cut(s) 303
BsuRI GGCC 3 cut(s) 112, 510, 821
BtgI CCRYGG 1 cut(s) 1112
BtgZI GCGATG 1 cut(s) 1044
BtrI CACGTC 1 cut(s) 1198
BtsCI GGATG 7 cut(s) 254, 366, 412, 586, 667, 709, 1012
BtsIMutI CAGTG 2 cut(s) 127, 879
Cac8I GCNNGC 2 cut(s) 1014, 1203
CciI TCATGA 3 cut(s) 490, 637, 766
CfoI GCGC 3 cut(s) 145, 275, 735
Cfr13I GGNCC 4 cut(s) 16, 195, 988, 1037
CseI GACGC 2 cut(s) 248, 623
Csp6I GTAC 4 cut(s) 46, 894, 958, 1058
CviAII CATG 7 cut(s) 229, 491, 638, 767, 884, 1061, 1113
CviQI GTAC 4 cut(s) 46, 894, 958, 1058
DdeI CTNAG 3 cut(s) 34, 303, 890
DinI GGCGCC 2 cut(s) 144, 274
DpnI GATC 4 cut(s) 468, 615, 694, 930
DpnII GATC 4 cut(s) 466, 613, 692, 928
EaeI YGGCCR 2 cut(s) 110, 819
Eam1104I CTCTTC 2 cut(s) 36, 1152
EarI CTCTTC 2 cut(s) 36, 1152
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 1 cut(s) 522
Eco130I CCWWGG 1 cut(s) 1112
Eco24I GRGCYC 2 cut(s) 136, 524
Eco32I GATATC 1 cut(s) 1083
Eco47I GGWCC 4 cut(s) 16, 195, 988, 1037
Eco53kI GAGCTC 1 cut(s) 522
Eco57I CTGAAG 3 cut(s) 816, 1133, 1155
Eco81I CCTNAGG 1 cut(s) 303
Eco91I GGTNACC 1 cut(s) 536
EcoICRI GAGCTC 1 cut(s) 522
EcoO109I RGGNCCY 2 cut(s) 195, 988
EcoO65I GGTNACC 1 cut(s) 536
EcoRII CCWGG 2 cut(s) 12, 915
EcoRV GATATC 1 cut(s) 1083
EcoT14I CCWWGG 1 cut(s) 1112
EcoT38I GRGCYC 2 cut(s) 136, 524
EgeI GGCGCC 2 cut(s) 144, 274
EheI GGCGCC 2 cut(s) 144, 274
ErhI CCWWGG 1 cut(s) 1112
Esp3I CGTCTC 2 cut(s) 120, 1017
FaeI CATG 7 cut(s) 232, 494, 641, 770, 887, 1064, 1116
FaqI GGGAC 3 cut(s) 208, 740, 1001
FatI CATG 7 cut(s) 228, 490, 637, 766, 883, 1060, 1112
FauNDI CATATG 1 cut(s) 556
FblI GTMKAC 1 cut(s) 627
Fnu4HI GCNGC 3 cut(s) 146, 149, 365
FokI GGATG 7 cut(s) 241, 373, 419, 593, 654, 716, 1019
FriOI GRGCYC 2 cut(s) 136, 524
Fsp4HI GCNGC 3 cut(s) 146, 149, 365
FspI TGCGCA 1 cut(s) 734
GlaI GCGC 3 cut(s) 144, 274, 734
GluI GCNGC 3 cut(s) 146, 149, 365
GsaI CCCAGC 2 cut(s) 262, 751
HaeII RGCGCY 2 cut(s) 146, 276
HaeIII GGCC 3 cut(s) 112, 510, 821
HgaI GACGC 2 cut(s) 248, 623
HhaI GCGC 3 cut(s) 145, 275, 735
Hin1I GRCGYC 3 cut(s) 143, 240, 273
Hin1II CATG 7 cut(s) 232, 494, 641, 770, 887, 1064, 1116
Hin6I GCGC 3 cut(s) 143, 273, 733
HinP1I GCGC 3 cut(s) 143, 273, 733
HinfI GANTC 2 cut(s) 23, 325
HphI GGTGA 2 cut(s) 89, 112
Hpy166II GTNNAC 3 cut(s) 127, 178, 628
Hpy188I TCNGA 7 cut(s) 208, 283, 672, 835, 891, 1087, 1135
Hpy188III TCNNGA 9 cut(s) 55, 104, 452, 470, 491, 599, 638, 767, 938
Hpy8I GTNNAC 3 cut(s) 127, 178, 628
Hpy99I CGWCG 3 cut(s) 242, 1187, 1190
HpyAV CCTTC 7 cut(s) 174, 431, 494, 523, 598, 966, 1221
HpyCH4III ACNGT 4 cut(s) 124, 844, 874, 946
HpyCH4IV ACGT 2 cut(s) 624, 1197
HpyCH4V TGCA 3 cut(s) 389, 883, 1201
HpyF10VI GCNNNNNNNGC 5 cut(s) 140, 370, 874, 959, 1179
HpyF3I CTNAG 3 cut(s) 34, 303, 890
HpySE526I ACGT 2 cut(s) 624, 1197
Hsp92I GRCGYC 3 cut(s) 143, 240, 273
Hsp92II CATG 7 cut(s) 232, 494, 641, 770, 887, 1064, 1116
HspAI GCGC 3 cut(s) 143, 273, 733
KasI GGCGCC 2 cut(s) 142, 272
KflI GGGWCCC 1 cut(s) 195
Kzo9I GATC 4 cut(s) 466, 613, 692, 928
LmnI GCTCC 2 cut(s) 139, 519
Lsp1109I GCAGC 1 cut(s) 160
LweI GCATC 6 cut(s) 288, 351, 457, 676, 836, 962
MaeII ACGT 2 cut(s) 624, 1197
MaeIII GTNAC 2 cut(s) 536, 1067
MalI GATC 4 cut(s) 468, 615, 694, 930
MboI GATC 4 cut(s) 466, 613, 692, 928
MboII GAAGA 9 cut(s) 20, 53, 70, 73, 334, 685, 822, 1139, 1148
MflI RGATCY 2 cut(s) 692, 928
MhlI GDGCHC 3 cut(s) 136, 355, 524
MlsI TGGCCA 1 cut(s) 821
MluCI AATT 3 cut(s) 567, 682, 781
MluNI TGGCCA 1 cut(s) 821
Mly113I GGCGCC 2 cut(s) 143, 273
MmeI TCCRAC 1 cut(s) 631
Mox20I TGGCCA 1 cut(s) 821
MscI TGGCCA 1 cut(s) 821
MseI TTAA 1 cut(s) 482
MslI CAYNNNNRTG 1 cut(s) 642
Msp20I TGGCCA 1 cut(s) 821
MspA1I CMGCKG 2 cut(s) 29, 399
MspR9I CCNGG 2 cut(s) 14, 917
MvaI CCWGG 2 cut(s) 14, 917
MwoI GCNNNNNNNGC 5 cut(s) 140, 370, 874, 959, 1179
NarI GGCGCC 2 cut(s) 143, 273
NcoI CCATGG 1 cut(s) 1112
NdeI CATATG 1 cut(s) 556
NdeII GATC 4 cut(s) 466, 613, 692, 928
NlaIII CATG 7 cut(s) 232, 494, 641, 770, 887, 1064, 1116
NlaIV GGNNCC 7 cut(s) 135, 144, 196, 197, 274, 930, 989
NmeAIII GCCGAG 1 cut(s) 119
NmuCI GTSAC 1 cut(s) 1067
NsbI TGCGCA 1 cut(s) 734
NspI RCATGY 1 cut(s) 887
PagI TCATGA 3 cut(s) 490, 637, 766
PcsI WCGNNNNNNNCGW 2 cut(s) 668, 1194
PfeI GAWTC 2 cut(s) 23, 325
Pfl23II CGTACG 1 cut(s) 957
PkrI GCNGC 3 cut(s) 147, 150, 366
PluTI GGCGCC 2 cut(s) 146, 276
Ppu21I YACGTR 1 cut(s) 625
PpuMI RGGWCCY 2 cut(s) 195, 988
Psp124BI GAGCTC 1 cut(s) 524
Psp5II RGGWCCY 2 cut(s) 195, 988
Psp6I CCWGG 2 cut(s) 12, 915
PspEI GGTNACC 1 cut(s) 536
PspFI CCCAGC 2 cut(s) 258, 747
PspGI CCWGG 2 cut(s) 12, 915
PspLI CGTACG 1 cut(s) 957
PspN4I GGNNCC 7 cut(s) 135, 144, 196, 197, 274, 930, 989
PspPI GGNCC 4 cut(s) 16, 195, 988, 1037
PspPPI RGGWCCY 2 cut(s) 195, 988
PsuI RGATCY 2 cut(s) 692, 928
PvuII CAGCTG 1 cut(s) 29
RsaI GTAC 4 cut(s) 47, 895, 959, 1059
RsaNI GTAC 4 cut(s) 46, 894, 958, 1058
RseI CAYNNNNRTG 1 cut(s) 642
SacI GAGCTC 1 cut(s) 524
SaqAI TTAA 1 cut(s) 482
SatI GCNGC 3 cut(s) 146, 149, 365
Sau3AI GATC 4 cut(s) 466, 613, 692, 928
Sau96I GGNCC 4 cut(s) 16, 195, 988, 1037
ScaI AGTACT 1 cut(s) 895
ScrFI CCNGG 2 cut(s) 14, 917
SduI GDGCHC 3 cut(s) 136, 355, 524
SfaNI GCATC 6 cut(s) 288, 351, 457, 676, 836, 962
SfoI GGCGCC 2 cut(s) 144, 274
SinI GGWCC 4 cut(s) 16, 195, 988, 1037
SmiMI CAYNNNNRTG 1 cut(s) 642
SmlI CTYRAG 1 cut(s) 597
SmoI CTYRAG 1 cut(s) 597
Sse9I AATT 3 cut(s) 567, 682, 781
SsiI CCGC 6 cut(s) 5, 146, 365, 399, 404, 1065
SspDI GGCGCC 2 cut(s) 142, 272
SstI GAGCTC 1 cut(s) 524
StyD4I CCNGG 2 cut(s) 12, 915
StyI CCWWGG 1 cut(s) 1112
TaaI ACNGT 4 cut(s) 124, 844, 874, 946
TaiI ACGT 2 cut(s) 627, 1200
TaqI TCGA 2 cut(s) 105, 855
TasI AATT 3 cut(s) 567, 682, 781
TatI WGTACW 2 cut(s) 893, 1057
TauI GCSGC 2 cut(s) 148, 367
TfiI GAWTC 2 cut(s) 23, 325
Tru1I TTAA 1 cut(s) 482
Tru9I TTAA 1 cut(s) 482
TscAI CASTG 2 cut(s) 134, 879
TseFI GTSAC 1 cut(s) 1067
TseI GCWGC 1 cut(s) 148
Tsp45I GTSAC 1 cut(s) 1067
TspDTI ATGAA 2 cut(s) 543, 822
TspGWI ACGGA 2 cut(s) 789, 1050
TspRI CASTG 2 cut(s) 134, 879
VpaK11BI GGWCC 4 cut(s) 16, 195, 988, 1037
XapI RAATTY 2 cut(s) 567, 682
XceI RCATGY 1 cut(s) 887
XcmI CCANNNNNNNNNTGG 2 cut(s) 226, 266
XmiI GTMKAC 1 cut(s) 627
ZrmI AGTACT 1 cut(s) 895
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.