pycom01g10820

Protein SDE2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0009131
Physical Location & Seq
Forward (+)
11608869 .. 11610710
1842 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 738 bp
ATGGCGGAATCCATCGTCACCAAATCCAACACATACAACCTCTTCGTGAACCTCTTGGAGGGCAAAACCCTAACCCTAAAATTCACAACCCCGGAGATCCCCGCCACTTCCCTCAAGCACCTCCTATACAAATTCACCAAAATACCCCTCCAGCACCAGCGCCTCGTCACCGGGACTTGCCAGCTCGAGGATGATTCTGTCCTCTCGTGCTCCTCCTCCCACGCGCCGGACTTCCCAACCGTGCATCTTCTGCTCCGTCTCGCCGGAGGAAAGGGCGGGTTCGGGTCGCTGCTGCGCGGGGCGGCGACGAAGGCCGGGCAGAAGAAGACGAGCAATTTCGACGCTTGTCGCGACATGAGTGGTCGGCGGTTGAGGCATGTTAATGCGGAGAAGAAGCTGGAGGAGTGGAGGGCTGAGGAAGAAGAGAGGATGCTTGAGAAGATGGCAGAGGATTATTTGAAGGGTGTGGCGAAGAAGGGCAAAAGGGGAACTGGGGATGATTTGGCTGAGAAGTATGTGGCCAAGTATAGGGAGCAGTCGGAGCGCTGCATTTCGGAGGTTTTGGATTCAGTTAAGGAGGCAGTGAAGGGGAAGCGTAAGGGGCCGGCCAAGGAGGCCGTGGAGGATTCGAAAAGGCTGAAAATTTGTTCTGGTGAAACTTGTTTCGGAAATGCTACATTTTCTTTATTTCAGAAACTTTTTGGAGAAACACTGTATCTTCCTACCATTTCTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Telomere_Sde2 Telomere_Sde2_2

Protein Analysis

246

Amino Acids

27.27

Weight (kDa)

9.18

Isoelectric Point (pI)

38.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SDE2 PF22782 89 - 192 1.2e-24 Splicing regulator SDE2, SDE2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 224, 297, 351
AciI CCGC 7 cut(s) 5, 102, 276, 297, 302, 367, 386
AclWI GGATC 1 cut(s) 91
AcoI YGGCCR 2 cut(s) 519, 606
AcsI RAATTY 3 cut(s) 80, 131, 642
AfeI AGCGCT 1 cut(s) 545
AfiI CCNNNNNNNGG 4 cut(s) 58, 187, 226, 528
AgsI TTSAA 1 cut(s) 460
AluBI AGCT 2 cut(s) 184, 397
AluI AGCT 2 cut(s) 184, 397
Alw21I GWGCWC 1 cut(s) 212
Alw26I GTCTC 1 cut(s) 263
AlwI GGATC 1 cut(s) 91
Ama87I CYCGRG 1 cut(s) 185
Aor51HI AGCGCT 1 cut(s) 545
AoxI GGCC 5 cut(s) 312, 519, 602, 606, 615
ApeKI GCWGC 3 cut(s) 289, 292, 546
ApoI RAATTY 3 cut(s) 80, 131, 642
AspLEI GCGC 4 cut(s) 162, 226, 297, 546
AspS9I GGNCC 1 cut(s) 602
AsuC2I CCSGG 3 cut(s) 92, 172, 316
AsuHPI GGTGA 4 cut(s) 10, 127, 160, 665
AsuII TTCGAA 1 cut(s) 629
AvaI CYCGRG 1 cut(s) 185
BalI TGGCCA 1 cut(s) 521
BauI CACGAG 1 cut(s) 205
BbsI GAAGAC 1 cut(s) 332
Bbv12I GWGCWC 1 cut(s) 212
BbvCI CCTCAGC 1 cut(s) 414
BbvI GCAGC 3 cut(s) 276, 279, 533
BccI CCATC 2 cut(s) 20, 436
BceAI ACGGC 1 cut(s) 602
BcnI CCSGG 3 cut(s) 92, 172, 316
BcoDI GTCTC 1 cut(s) 263
BfoI RGCGCY 2 cut(s) 163, 547
BglI GCCNNNNNGGC 1 cut(s) 614
BisI GCNGC 4 cut(s) 290, 293, 303, 547
BlsI GCNGC 4 cut(s) 291, 294, 304, 548
Bme1390I CCNGG 3 cut(s) 92, 172, 316
BmeT110I CYCGRG 1 cut(s) 185
BmgT120I GGNCC 1 cut(s) 602
BmiI GGNNCC 1 cut(s) 603
BmrFI CCNGG 3 cut(s) 92, 172, 316
BmrI ACTGGG 1 cut(s) 501
BmsI GCATC 2 cut(s) 253, 420
BmuI ACTGGG 1 cut(s) 501
BoxI GACNNNNGTC 1 cut(s) 345
BpiI GAAGAC 1 cut(s) 332
BpmI CTGGAG 2 cut(s) 134, 419
Bpu10I CCTNAGC 1 cut(s) 414
Bpu14I TTCGAA 1 cut(s) 629
BpuEI CTTGAG 2 cut(s) 98, 455
BpuMI CCSGG 3 cut(s) 92, 172, 316
BsaJI CCNNGG 3 cut(s) 90, 609, 618
Bsc4I CCNNNNNNNGG 4 cut(s) 58, 187, 226, 528
Bse118I RCCGGY 1 cut(s) 604
Bse1I ACTGG 1 cut(s) 496
BseDI CCNNGG 3 cut(s) 90, 609, 618
BseGI GGATG 3 cut(s) 196, 435, 502
BseLI CCNNNNNNNGG 4 cut(s) 58, 187, 226, 528
BseMII CTCAG 2 cut(s) 405, 498
BseNI ACTGG 1 cut(s) 496
BseRI GAGGAG 3 cut(s) 202, 205, 416
BseXI GCAGC 3 cut(s) 276, 279, 533
Bsh1236I CGCG 3 cut(s) 224, 297, 351
BshFI GGCC 5 cut(s) 314, 521, 604, 608, 617
BsiHKAI GWGCWC 1 cut(s) 212
BsiHKCI CYCGRG 1 cut(s) 185
BsiSI CCGG 6 cut(s) 92, 171, 227, 264, 315, 605
BslFI GGGAC 1 cut(s) 187
BslI CCNNNNNNNGG 4 cut(s) 58, 187, 226, 528
BsmAI GTCTC 1 cut(s) 263
BsmBI CGTCTC 1 cut(s) 263
BsmFI GGGAC 1 cut(s) 187
BsnI GGCC 5 cut(s) 314, 521, 604, 608, 617
BsoBI CYCGRG 1 cut(s) 185
Bsp119I TTCGAA 1 cut(s) 629
Bsp1286I GDGCHC 1 cut(s) 212
Bsp143I GATC 1 cut(s) 96
Bsp68I TCGCGA 1 cut(s) 351
BspACI CCGC 7 cut(s) 5, 102, 276, 297, 302, 367, 386
BspANI GGCC 5 cut(s) 314, 521, 604, 608, 617
BspCNI CTCAG 2 cut(s) 406, 499
BspFNI CGCG 3 cut(s) 224, 297, 351
BspLI GGNNCC 1 cut(s) 603
BspPI GGATC 1 cut(s) 91
BspT104I TTCGAA 1 cut(s) 629
BsrFI RCCGGY 1 cut(s) 604
BsrI ACTGG 1 cut(s) 496
BssAI RCCGGY 1 cut(s) 604
BssECI CCNNGG 3 cut(s) 90, 609, 618
BssMI GATC 1 cut(s) 96
BssSI CACGAG 1 cut(s) 205
BssT1I CCWWGG 1 cut(s) 609
Bst2BI CACGAG 1 cut(s) 205
Bst4CI ACNGT 2 cut(s) 241, 714
Bst6I CTCTTC 2 cut(s) 47, 417
BstAPI GCANNNNNTGC 1 cut(s) 250
BstBI TTCGAA 1 cut(s) 629
BstC8I GCNNGC 2 cut(s) 182, 606
BstDEI CTNAG 2 cut(s) 414, 507
BstDSI CCRYGG 1 cut(s) 618
BstENI CCTNNNNNAGG 1 cut(s) 56
BstF5I GGATG 3 cut(s) 196, 435, 502
BstFNI CGCG 3 cut(s) 224, 297, 351
BstH2I RGCGCY 2 cut(s) 163, 547
BstHHI GCGC 4 cut(s) 162, 226, 297, 546
BstKTI GATC 1 cut(s) 99
BstMAI GTCTC 1 cut(s) 263
BstMBI GATC 1 cut(s) 96
BstMWI GCNNNNNNNGC 6 cut(s) 250, 311, 373, 541, 601, 614
BstNSI RCATGY 1 cut(s) 380
BstPAI GACNNNNGTC 1 cut(s) 345
BstSCI CCNGG 3 cut(s) 90, 170, 314
BstUI CGCG 3 cut(s) 224, 297, 351
BstV1I GCAGC 3 cut(s) 276, 279, 533
BstV2I GAAGAC 1 cut(s) 332
BstX2I RGATCY 1 cut(s) 96
BstYI RGATCY 1 cut(s) 96
BsuRI GGCC 5 cut(s) 314, 521, 604, 608, 617
BtgI CCRYGG 1 cut(s) 618
BtsCI GGATG 3 cut(s) 196, 435, 502
BtsI GCAGTG 1 cut(s) 588
BtsIMutI CAGTG 2 cut(s) 588, 710
BtuMI TCGCGA 1 cut(s) 351
Cac8I GCNNGC 2 cut(s) 182, 606
CfoI GCGC 4 cut(s) 162, 226, 297, 546
Cfr10I RCCGGY 1 cut(s) 604
Cfr13I GGNCC 1 cut(s) 602
CseI GACGC 1 cut(s) 350
CviAII CATG 2 cut(s) 355, 377
DdeI CTNAG 2 cut(s) 414, 507
DpnI GATC 1 cut(s) 98
DpnII GATC 1 cut(s) 96
EaeI YGGCCR 2 cut(s) 519, 606
Eam1104I CTCTTC 2 cut(s) 47, 417
EarI CTCTTC 2 cut(s) 47, 417
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 609
Eco47III AGCGCT 1 cut(s) 545
Eco88I CYCGRG 1 cut(s) 185
EcoNI CCTNNNNNAGG 1 cut(s) 56
EcoT14I CCWWGG 1 cut(s) 609
ErhI CCWWGG 1 cut(s) 609
Esp3I CGTCTC 1 cut(s) 263
FaeI CATG 2 cut(s) 358, 380
FaiI YATR 6 cut(s) 34, 127, 356, 378, 516, 528
FaqI GGGAC 1 cut(s) 187
FatI CATG 2 cut(s) 354, 376
FauI CCCGC 3 cut(s) 109, 269, 290
Fnu4HI GCNGC 4 cut(s) 290, 293, 303, 547
FokI GGATG 3 cut(s) 203, 442, 509
FseI GGCCGGCC 1 cut(s) 608
Fsp4HI GCNGC 4 cut(s) 290, 293, 303, 547
GlaI GCGC 4 cut(s) 161, 225, 296, 545
GluI GCNGC 4 cut(s) 290, 293, 303, 547
GsuI CTGGAG 2 cut(s) 134, 419
HaeII RGCGCY 2 cut(s) 163, 547
HaeIII GGCC 5 cut(s) 314, 521, 604, 608, 617
HapII CCGG 6 cut(s) 92, 171, 227, 264, 315, 605
HgaI GACGC 1 cut(s) 350
HhaI GCGC 4 cut(s) 162, 226, 297, 546
Hin1II CATG 2 cut(s) 358, 380
Hin6I GCGC 4 cut(s) 160, 224, 295, 544
HinP1I GCGC 4 cut(s) 160, 224, 295, 544
HinfI GANTC 4 cut(s) 8, 194, 566, 626
HpaII CCGG 6 cut(s) 92, 171, 227, 264, 315, 605
HphI GGTGA 4 cut(s) 10, 127, 160, 665
Hpy166II GTNNAC 1 cut(s) 49
Hpy188I TCNGA 4 cut(s) 541, 556, 668, 693
Hpy188III TCNNGA 2 cut(s) 46, 350
Hpy8I GTNNAC 1 cut(s) 49
Hpy99I CGWCG 2 cut(s) 310, 344
HpyAV CCTTC 4 cut(s) 304, 454, 469, 580
HpyCH4III ACNGT 2 cut(s) 241, 714
HpyCH4V TGCA 2 cut(s) 244, 549
HpyF10VI GCNNNNNNNGC 6 cut(s) 250, 311, 373, 541, 601, 614
HpyF3I CTNAG 2 cut(s) 414, 507
Hsp92II CATG 2 cut(s) 358, 380
HspAI GCGC 4 cut(s) 160, 224, 295, 544
KroI GCCGGC 1 cut(s) 604
KroNI GCCGGC 1 cut(s) 606
Kzo9I GATC 1 cut(s) 96
LmnI GCTCC 4 cut(s) 215, 258, 532, 541
Lsp1109I GCAGC 3 cut(s) 276, 279, 533
LweI GCATC 2 cut(s) 253, 420
MaeIII GTNAC 2 cut(s) 16, 166
MalI GATC 1 cut(s) 98
MboI GATC 1 cut(s) 96
MflI RGATCY 1 cut(s) 96
MhlI GDGCHC 1 cut(s) 212
MlsI TGGCCA 1 cut(s) 521
MluCI AATT 4 cut(s) 80, 131, 334, 642
MluNI TGGCCA 1 cut(s) 521
MmeI TCCRAC 2 cut(s) 51, 519
Mox20I TGGCCA 1 cut(s) 521
MroNI GCCGGC 1 cut(s) 604
MscI TGGCCA 1 cut(s) 521
MseI TTAA 3 cut(s) 381, 573, 736
MslI CAYNNNNRTG 1 cut(s) 381
Msp20I TGGCCA 1 cut(s) 521
MspI CCGG 6 cut(s) 92, 171, 227, 264, 315, 605
MspR9I CCNGG 3 cut(s) 92, 172, 316
MvnI CGCG 3 cut(s) 224, 297, 351
MwoI GCNNNNNNNGC 6 cut(s) 250, 311, 373, 541, 601, 614
NaeI GCCGGC 1 cut(s) 606
NciI CCSGG 3 cut(s) 92, 172, 316
NdeII GATC 1 cut(s) 96
NgoMIV GCCGGC 1 cut(s) 604
NlaIII CATG 2 cut(s) 358, 380
NlaIV GGNNCC 1 cut(s) 603
NmuCI GTSAC 2 cut(s) 16, 166
NruI TCGCGA 1 cut(s) 351
NspI RCATGY 1 cut(s) 380
NspV TTCGAA 1 cut(s) 629
PaeR7I CTCGAG 1 cut(s) 185
PcsI WCGNNNNNNNCGW 1 cut(s) 348
PdiI GCCGGC 1 cut(s) 606
PfeI GAWTC 4 cut(s) 8, 194, 566, 626
PkrI GCNGC 4 cut(s) 291, 294, 304, 548
PshAI GACNNNNGTC 1 cut(s) 345
PspN4I GGNNCC 1 cut(s) 603
PspPI GGNCC 1 cut(s) 602
PspXI VCTCGAGB 1 cut(s) 185
PsuI RGATCY 1 cut(s) 96
RigI GGCCGGCC 1 cut(s) 608
RruI TCGCGA 1 cut(s) 351
RseI CAYNNNNRTG 1 cut(s) 381
SaqAI TTAA 3 cut(s) 381, 573, 736
SatI GCNGC 4 cut(s) 290, 293, 303, 547
Sau3AI GATC 1 cut(s) 96
Sau96I GGNCC 1 cut(s) 602
ScrFI CCNGG 3 cut(s) 92, 172, 316
SduI GDGCHC 1 cut(s) 212
SetI ASST 6 cut(s) 42, 54, 123, 186, 399, 561
SfaNI GCATC 2 cut(s) 253, 420
SfiI GGCCNNNNNGGCC 1 cut(s) 614
Sfr274I CTCGAG 1 cut(s) 185
SfuI TTCGAA 1 cut(s) 629
SlaI CTCGAG 1 cut(s) 185
SmiMI CAYNNNNRTG 1 cut(s) 381
SmlI CTYRAG 3 cut(s) 113, 185, 434
SmoI CTYRAG 3 cut(s) 113, 185, 434
Sse9I AATT 4 cut(s) 80, 131, 334, 642
SsiI CCGC 7 cut(s) 5, 102, 276, 297, 302, 367, 386
StyD4I CCNGG 3 cut(s) 90, 170, 314
StyI CCWWGG 1 cut(s) 609
TaaI ACNGT 2 cut(s) 241, 714
TaqI TCGA 3 cut(s) 186, 339, 629
TasI AATT 4 cut(s) 80, 131, 334, 642
TauI GCSGC 1 cut(s) 305
TfiI GAWTC 4 cut(s) 8, 194, 566, 626
Tru1I TTAA 3 cut(s) 381, 573, 736
Tru9I TTAA 3 cut(s) 381, 573, 736
TscAI CASTG 2 cut(s) 588, 717
TseFI GTSAC 2 cut(s) 16, 166
TseI GCWGC 3 cut(s) 289, 292, 546
Tsp45I GTSAC 2 cut(s) 16, 166
TspGWI ACGGA 1 cut(s) 245
TspRI CASTG 2 cut(s) 588, 717
XagI CCTNNNNNAGG 1 cut(s) 56
XapI RAATTY 3 cut(s) 80, 131, 642
XceI RCATGY 1 cut(s) 380
XcmI CCANNNNNNNNNTGG 1 cut(s) 616
XhoI CTCGAG 1 cut(s) 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.