pycom01g13960

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0004073
Physical Location & Seq
Reverse (-)
14272794 .. 14273881
1088 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 693 bp
ATGGAATTCATTGCCAAAACTACTACCACTCCTACAAGTCCACCTCCATTCTCCCACTCTCTGTCTTCCTCCATTTCTTCTCCCAGTACTGCACCATTTCCATCCCCTAACTCTCATCACTTATCTAATTATTCTTCTCCTCATGCTGCTAATAGTAATATTGCTACTAATCCATTTCCGACCTATCCTTCACCGCCGCCACCACCACCTGTGGTTCTCAGCCCATGCGCCGCCTGCAAGATTCTTCGCCGCCGGTGTGTGGAGAAGTGCGTTTTAGCGCCATACTTCCCTCCTACTGAGCCCCTTAAGTTCACTATTGCCCACAGAGTCTTTGGAGCTAGCAACATCATCAAGCTCTTGCAGGAAATTCCAGAGTCTCACAGAGCAGATGCAGTGAGCAGCATGGTTTACGAAGCCAATGCCAGAATTCGCGACCCGGTTTATGGCTGCGCCGGAGCAATTTGTCAGCTCCAGAAACAAGTCGGTGAGCTCCAAGCCCAACTGGCCAAGGCACAGGCAGAGCTAGTGAACATGCAATGCGAGCAAGGCAATCTGATTGCCCTAATTTGCATGGACATGACACAGTCTAAAGAACAAGCCATTTTGCAGCAGCAACAGTCTAATTGCAATGACACAAGCTGTTTTCCGGATGAAAACAATTTGGGCACGACTTGGGAGCCTCTCTGGACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

231

Amino Acids

25.06

Weight (kDa)

6.29

Isoelectric Point (pI)

70.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 75 - 172 2.3e-40 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 432
AccIII TCCGGA 1 cut(s) 646
AciI CCGC 4 cut(s) 194, 197, 231, 250
AcoI YGGCCR 1 cut(s) 504
AcsI RAATTY 3 cut(s) 5, 366, 426
AfaI GTAC 1 cut(s) 88
AfiI CCNNNNNNNGG 2 cut(s) 259, 443
AflII CTTAAG 1 cut(s) 305
AluBI AGCT 6 cut(s) 338, 355, 469, 490, 523, 639
AluI AGCT 6 cut(s) 338, 355, 469, 490, 523, 639
Alw21I GWGCWC 1 cut(s) 492
Alw26I GTCTC 1 cut(s) 381
Aor13HI TCCGGA 1 cut(s) 646
AoxI GGCC 1 cut(s) 504
ApeKI GCWGC 5 cut(s) 146, 399, 447, 607, 610
ApoI RAATTY 3 cut(s) 5, 366, 426
AspLEI GCGC 3 cut(s) 230, 280, 452
AsuC2I CCSGG 1 cut(s) 437
AsuHPI GGTGA 2 cut(s) 183, 497
AsuNHI GCTAGC 1 cut(s) 338
BaeGI GKGCMC 1 cut(s) 668
BalI TGGCCA 1 cut(s) 506
BanII GRGCYC 2 cut(s) 303, 492
BbsI GAAGAC 1 cut(s) 57
Bbv12I GWGCWC 1 cut(s) 492
BbvI GCAGC 5 cut(s) 133, 411, 434, 619, 622
BccI CCATC 1 cut(s) 109
BcgI CGANNNNNNTGC 2 cut(s) 401, 435
BcnI CCSGG 1 cut(s) 437
BcoDI GTCTC 1 cut(s) 381
BfaI CTAG 2 cut(s) 339, 524
BfoI RGCGCY 1 cut(s) 281
BfrI CTTAAG 1 cut(s) 305
BglI GCCNNNNNGGC 1 cut(s) 503
BisI GCNGC 8 cut(s) 147, 197, 231, 250, 400, 448, 608, 611
BlsI GCNGC 8 cut(s) 148, 198, 232, 251, 401, 449, 609, 612
BmcAI AGTACT 1 cut(s) 88
Bme1390I CCNGG 1 cut(s) 437
BmiI GGNNCC 1 cut(s) 678
BmrFI CCNGG 1 cut(s) 437
BmrI ACTGGG 1 cut(s) 78
BmsI GCATC 1 cut(s) 379
BmtI GCTAGC 1 cut(s) 342
BmuI ACTGGG 1 cut(s) 78
BpiI GAAGAC 1 cut(s) 57
BpmI CTGGAG 1 cut(s) 455
BpuMI CCSGG 1 cut(s) 437
BsaJI CCNNGG 1 cut(s) 507
BsaWI WCCGGW 1 cut(s) 646
BsaXI ACNNNNNCTCC 2 cut(s) 13, 43
Bsc4I CCNNNNNNNGG 2 cut(s) 259, 443
Bse118I RCCGGY 1 cut(s) 252
Bse1I ACTGG 2 cut(s) 84, 507
Bse3DI GCAATG 3 cut(s) 9, 542, 634
BseAI TCCGGA 1 cut(s) 646
BseDI CCNNGG 1 cut(s) 507
BseGI GGATG 2 cut(s) 101, 655
BseLI CCNNNNNNNGG 2 cut(s) 259, 443
BseMI GCAATG 3 cut(s) 9, 542, 634
BseMII CTCAG 2 cut(s) 232, 288
BseNI ACTGG 2 cut(s) 84, 507
BseRI GAGGAG 1 cut(s) 129
BseSI GKGCMC 1 cut(s) 668
BseXI GCAGC 5 cut(s) 133, 411, 434, 619, 622
BsgI GTGCAG 1 cut(s) 75
Bsh1236I CGCG 1 cut(s) 432
BshFI GGCC 1 cut(s) 506
BsiHKAI GWGCWC 1 cut(s) 492
BsiSI CCGG 4 cut(s) 253, 437, 453, 647
BslI CCNNNNNNNGG 2 cut(s) 259, 443
BsmAI GTCTC 1 cut(s) 381
BsnI GGCC 1 cut(s) 506
Bsp1286I GDGCHC 3 cut(s) 303, 492, 668
Bsp13I TCCGGA 1 cut(s) 646
Bsp68I TCGCGA 1 cut(s) 432
BspACI CCGC 4 cut(s) 194, 197, 231, 250
BspANI GGCC 1 cut(s) 506
BspCNI CTCAG 2 cut(s) 231, 289
BspEI TCCGGA 1 cut(s) 646
BspFNI CGCG 1 cut(s) 432
BspLI GGNNCC 1 cut(s) 678
BspOI GCTAGC 1 cut(s) 342
BspTI CTTAAG 1 cut(s) 305
BsrDI GCAATG 3 cut(s) 9, 542, 634
BsrFI RCCGGY 1 cut(s) 252
BsrI ACTGG 2 cut(s) 84, 507
BssAI RCCGGY 1 cut(s) 252
BssECI CCNNGG 1 cut(s) 507
BssT1I CCWWGG 1 cut(s) 507
Bst4CI ACNGT 2 cut(s) 585, 618
BstAFI CTTAAG 1 cut(s) 305
BstC8I GCNNGC 3 cut(s) 235, 340, 542
BstDEI CTNAG 2 cut(s) 218, 297
BstF5I GGATG 2 cut(s) 101, 655
BstFNI CGCG 1 cut(s) 432
BstH2I RGCGCY 1 cut(s) 281
BstHHI GCGC 3 cut(s) 230, 280, 452
BstMAI GTCTC 1 cut(s) 381
BstMWI GCNNNNNNNGC 4 cut(s) 234, 503, 541, 546
BstNSI RCATGY 1 cut(s) 535
BstSCI CCNGG 1 cut(s) 435
BstSLI GKGCMC 1 cut(s) 668
BstUI CGCG 1 cut(s) 432
BstV1I GCAGC 5 cut(s) 133, 411, 434, 619, 622
BstV2I GAAGAC 1 cut(s) 57
BsuRI GGCC 1 cut(s) 506
BtsCI GGATG 2 cut(s) 101, 655
BtsI GCAGTG 1 cut(s) 399
BtsIMutI CAGTG 1 cut(s) 399
BtuMI TCGCGA 1 cut(s) 432
Cac8I GCNNGC 3 cut(s) 235, 340, 542
CfoI GCGC 3 cut(s) 230, 280, 452
Cfr10I RCCGGY 1 cut(s) 252
Csp6I GTAC 1 cut(s) 87
CviAII CATG 7 cut(s) 143, 225, 403, 532, 571, 577, 690
CviQI GTAC 1 cut(s) 87
DdeI CTNAG 2 cut(s) 218, 297
EaeI YGGCCR 1 cut(s) 504
Ecl136II GAGCTC 1 cut(s) 490
Eco130I CCWWGG 1 cut(s) 507
Eco24I GRGCYC 2 cut(s) 303, 492
Eco53kI GAGCTC 1 cut(s) 490
EcoICRI GAGCTC 1 cut(s) 490
EcoRI GAATTC 2 cut(s) 5, 426
EcoT14I CCWWGG 1 cut(s) 507
EcoT38I GRGCYC 2 cut(s) 303, 492
ErhI CCWWGG 1 cut(s) 507
FaeI CATG 7 cut(s) 146, 228, 406, 535, 574, 580, 693
FaiI YATR 9 cut(s) 144, 226, 283, 404, 444, 533, 572, 578, 691
FatI CATG 7 cut(s) 142, 224, 402, 531, 570, 576, 689
Fnu4HI GCNGC 8 cut(s) 147, 197, 231, 250, 400, 448, 608, 611
FokI GGATG 2 cut(s) 88, 662
FriOI GRGCYC 2 cut(s) 303, 492
Fsp4HI GCNGC 8 cut(s) 147, 197, 231, 250, 400, 448, 608, 611
FspBI CTAG 2 cut(s) 339, 524
GlaI GCGC 3 cut(s) 229, 279, 451
GluI GCNGC 8 cut(s) 147, 197, 231, 250, 400, 448, 608, 611
GsuI CTGGAG 1 cut(s) 455
HaeII RGCGCY 1 cut(s) 281
HaeIII GGCC 1 cut(s) 506
HapII CCGG 4 cut(s) 253, 437, 453, 647
HhaI GCGC 3 cut(s) 230, 280, 452
Hin1II CATG 7 cut(s) 146, 228, 406, 535, 574, 580, 693
Hin6I GCGC 3 cut(s) 228, 278, 450
HinP1I GCGC 3 cut(s) 228, 278, 450
HinfI GANTC 3 cut(s) 241, 327, 374
HpaII CCGG 4 cut(s) 253, 437, 453, 647
HphI GGTGA 2 cut(s) 183, 497
Hpy166II GTNNAC 4 cut(s) 41, 312, 409, 529
Hpy188I TCNGA 2 cut(s) 180, 555
Hpy188III TCNNGA 5 cut(s) 371, 431, 472, 647, 685
Hpy8I GTNNAC 4 cut(s) 41, 312, 409, 529
HpyAV CCTTC 1 cut(s) 198
HpyCH4III ACNGT 2 cut(s) 585, 618
HpyCH4V TGCA 8 cut(s) 92, 237, 361, 392, 535, 570, 607, 627
HpyF10VI GCNNNNNNNGC 4 cut(s) 234, 503, 541, 546
HpyF3I CTNAG 2 cut(s) 218, 297
Hsp92II CATG 7 cut(s) 146, 228, 406, 535, 574, 580, 693
HspAI GCGC 3 cut(s) 228, 278, 450
Kpn2I TCCGGA 1 cut(s) 646
LmnI GCTCC 5 cut(s) 335, 455, 474, 495, 676
Lsp1109I GCAGC 5 cut(s) 133, 411, 434, 619, 622
LweI GCATC 1 cut(s) 379
MaeI CTAG 2 cut(s) 339, 524
MboII GAAGA 4 cut(s) 57, 69, 126, 236
MhlI GDGCHC 3 cut(s) 303, 492, 668
MlsI TGGCCA 1 cut(s) 506
MluCI AATT 8 cut(s) 5, 127, 366, 426, 459, 564, 622, 658
MluNI TGGCCA 1 cut(s) 506
MlyI GAGTC 2 cut(s) 336, 383
MmeI TCCRAC 1 cut(s) 203
MnlI CCTC 5 cut(s) 54, 79, 150, 300, 690
Mox20I TGGCCA 1 cut(s) 506
MroI TCCGGA 1 cut(s) 646
MscI TGGCCA 1 cut(s) 506
MseI TTAA 1 cut(s) 306
MslI CAYNNNNRTG 1 cut(s) 575
Msp20I TGGCCA 1 cut(s) 506
MspCI CTTAAG 1 cut(s) 305
MspI CCGG 4 cut(s) 253, 437, 453, 647
MspR9I CCNGG 1 cut(s) 437
MvnI CGCG 1 cut(s) 432
MwoI GCNNNNNNNGC 4 cut(s) 234, 503, 541, 546
NciI CCSGG 1 cut(s) 437
NheI GCTAGC 1 cut(s) 338
NlaIII CATG 7 cut(s) 146, 228, 406, 535, 574, 580, 693
NlaIV GGNNCC 1 cut(s) 678
NruI TCGCGA 1 cut(s) 432
NspI RCATGY 1 cut(s) 535
PfeI GAWTC 1 cut(s) 241
PflFI GACNNNGTC 1 cut(s) 583
PkrI GCNGC 8 cut(s) 148, 198, 232, 251, 401, 449, 609, 612
PleI GAGTC 2 cut(s) 335, 382
PpsI GAGTC 2 cut(s) 335, 382
Psp124BI GAGCTC 1 cut(s) 492
PspN4I GGNNCC 1 cut(s) 678
PsyI GACNNNGTC 1 cut(s) 583
RruI TCGCGA 1 cut(s) 432
RsaI GTAC 1 cut(s) 88
RsaNI GTAC 1 cut(s) 87
RseI CAYNNNNRTG 1 cut(s) 575
SacI GAGCTC 1 cut(s) 492
SaqAI TTAA 1 cut(s) 306
SatI GCNGC 8 cut(s) 147, 197, 231, 250, 400, 448, 608, 611
ScaI AGTACT 1 cut(s) 88
SchI GAGTC 2 cut(s) 336, 383
ScrFI CCNGG 1 cut(s) 437
SduI GDGCHC 3 cut(s) 303, 492, 668
SetI ASST 9 cut(s) 46, 185, 211, 340, 357, 471, 492, 525, 641
SfaNI GCATC 1 cut(s) 379
SgrAI CRCCGGYG 1 cut(s) 252
SmiMI CAYNNNNRTG 1 cut(s) 575
SmlI CTYRAG 1 cut(s) 305
SmoI CTYRAG 1 cut(s) 305
Sse9I AATT 8 cut(s) 5, 127, 366, 426, 459, 564, 622, 658
SsiI CCGC 4 cut(s) 194, 197, 231, 250
SspI AATATT 1 cut(s) 160
SspMI CTAG 2 cut(s) 339, 524
SstI GAGCTC 1 cut(s) 492
StyD4I CCNGG 1 cut(s) 435
StyI CCWWGG 1 cut(s) 507
TaaI ACNGT 2 cut(s) 585, 618
TasI AATT 8 cut(s) 5, 127, 366, 426, 459, 564, 622, 658
TatI WGTACW 1 cut(s) 86
TauI GCSGC 3 cut(s) 199, 233, 252
TfiI GAWTC 1 cut(s) 241
Tru1I TTAA 1 cut(s) 306
Tru9I TTAA 1 cut(s) 306
TscAI CASTG 1 cut(s) 399
TseI GCWGC 5 cut(s) 146, 399, 447, 607, 610
TspDTI ATGAA 1 cut(s) 666
TspRI CASTG 1 cut(s) 399
Tth111I GACNNNGTC 1 cut(s) 583
Vha464I CTTAAG 1 cut(s) 305
XapI RAATTY 3 cut(s) 5, 366, 426
XceI RCATGY 1 cut(s) 535
XcmI CCANNNNNNNNNTGG 1 cut(s) 329
XspI CTAG 2 cut(s) 339, 524
ZrmI AGTACT 1 cut(s) 88
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.