pycom01g18390

platelet degranulation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0005918
Physical Location & Seq
Reverse (-)
17402717 .. 17405590
2874 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1491 bp
ATGATGTCGAATGGGGAAAGAAGAAGAAGTGCGAGATTGGTGGAACTTGAATCAAGGGCGGAAAGTAAGGGCACAGTAATATGTTATGCAGAAGAGGATGTGTCTTCTGAAGAAGATGATTCCTGCCAGAAACGGAGAAGAAAAAGGGTTAAGAGTAGACCTGTCCAAGATCTGGCTGCAAGTAGAAATGAGCATCCATTGAAAACAGAGTTAATGCCTTTATCTTTCTTCAACTTTAACTACAGGAAAGACTTGTACAATATGTTTGCAAAACCAGTAAACCCACAAGAGGTTAAGGGGTACAATGATATCATTGAAGAGCCAATGGATTTCGGCACGATTTCAGAAAAACTCAGTGGAGGAACCTACAGAACACTGGAAGAATTTCAGCATGATGTGTTTTTGGTATTCAGTAATGCAATGTCATACAACGCTCCCTCTTCCATTTTTAATCGAAAGGCTTGTGATATGAAAAATCTAGCGGTGGAGTTGTTTGAAGCCCTAGAGCAAGATTCTAAAAGTTTTGAAAGTGCATGTTCCTCAAAAATATCACGAGCTGGTAAGAGGAGCAAGAACATCATGAACAGTTCTGCTGATAGGTCAACTAATGGGATGCCTTTAAGGGGTCGGTCGCAAGGGGTTGCCGAGCAGAAGTTACAAAAAGCCGGAGTTCTTAATCCTTGTAATTCAACTTCAAACTTTCAGTTTAGTGATCTAGATCTTAATGTGGCATTATTTCAGAATGGCATCATAAATACTCAACCTTCAAATATCCTTCGGAGTTCCACCCAACCTCTATACTCCGGTGCTCAAACAAACATTGAGCACCATAATGGTCAGTTTATTGGGACTGCACCCTCAATCAATGCCTTGTTTAACAACAGCATTGGGAATGATGTTGGTAGGGGTAGGAATCCTTTTATAGCTGATCTGCCTGCTTCAGATATAAAGGGGGACTGTGAAAAGGTTTATGGCCAGTCACTGTCTTCTTCCATATGGTGGCGTTGCCCTCCAATTATTTCTAATTCAAGTAGGAGCCCAGCCTTTGGCTCCACACATGGGCTGAACTCAAATTGTTTTGGAGGTATACAGCATCAATTTCAACCTATGGGTGGTAGTGGAAGCACACCGTATGGAAGTAATAGTTTCGAGCAGGCGAGCCAAGGTCTGAACGGGTTGAGGCAAGCGGAGATAGGACCACAAATACCTGATTTTAAACCATTCCAGCAGCAAGGGCAAGGCTCGGGCACACCAGCCTCTGGAATCAGCATGAGGCCTATAAATTTGTCAGACATAGATCAATGGTTTGGGCATGGTCGGAGTGGAGGGGGATCAAACACTGGAGCTCCTCCTGCAAGCTCACAAGGGCTAGGTGCCGCGGAAACAAACATGTTTCCTTGTGACTTTCAGCACTCAGGGGGATCAAATGCTGGAGCTCTTCCTGCAAGCTCTGAGGGATGTGATTGGAACCCGTGGAACTTTCGGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bromodomain

Protein Analysis

497

Amino Acids

54.06

Weight (kDa)

6.72

Isoelectric Point (pI)

56.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bromodomain PF00439 80 - 150 5.2e-20 Bromodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1373
AccB7I CCANNNNNTGG 4 cut(s) 172, 999, 1046, 1259
AccI GTMKAC 2 cut(s) 157, 1087
AccII CGCG 1 cut(s) 1379
AciI CCGC 5 cut(s) 59, 482, 1187, 1377, 1379
AclWI GGATC 2 cut(s) 1339, 1429
AcoI YGGCCR 2 cut(s) 973, 1484
AcsI RAATTY 2 cut(s) 383, 1282
AcuI CTGAAG 2 cut(s) 129, 924
AfaI GTAC 2 cut(s) 257, 302
AfiI CCNNNNNNNGG 8 cut(s) 172, 289, 623, 999, 1046, 1059, 1112, 1259
AflIII ACRYGT 1 cut(s) 1389
AluBI AGCT 6 cut(s) 557, 926, 1346, 1359, 1436, 1449
AluI AGCT 6 cut(s) 557, 926, 1346, 1359, 1436, 1449
Alw21I GWGCWC 4 cut(s) 811, 828, 1348, 1438
AlwI GGATC 2 cut(s) 1339, 1429
AlwNI CAGNNNCTG 2 cut(s) 982, 1259
Ama87I CYCGRG 1 cut(s) 1243
AoxI GGCC 3 cut(s) 973, 1274, 1484
ApeKI GCWGC 2 cut(s) 176, 1228
ApoI RAATTY 2 cut(s) 383, 1282
Asp700I GAANNNNTTC 1 cut(s) 384
AspS9I GGNCC 1 cut(s) 1196
AvaI CYCGRG 1 cut(s) 1243
AvaII GGWCC 1 cut(s) 1196
BaeGI GKGCMC 2 cut(s) 74, 1250
BalI TGGCCA 1 cut(s) 975
BanI GGYRCC 1 cut(s) 1373
BanII GRGCYC 3 cut(s) 1040, 1348, 1438
BarI GAAGNNNNNNTAC 2 cut(s) 676, 708
BauI CACGAG 1 cut(s) 552
BbsI GAAGAC 2 cut(s) 96, 978
Bbv12I GWGCWC 4 cut(s) 811, 828, 1348, 1438
BbvI GCAGC 2 cut(s) 163, 1240
BfaI CTAG 4 cut(s) 479, 503, 716, 1370
BfmI CTRYAG 2 cut(s) 241, 367
BglII AGATCT 2 cut(s) 169, 718
BisI GCNGC 3 cut(s) 177, 1229, 1377
BlsI GCNGC 3 cut(s) 178, 1230, 1378
Bme18I GGWCC 1 cut(s) 1196
BmeT110I CYCGRG 1 cut(s) 1243
BmgT120I GGNCC 1 cut(s) 1196
BmiI GGNNCC 5 cut(s) 364, 1037, 1051, 1375, 1469
BmsI GCATC 4 cut(s) 202, 603, 756, 1102
BpiI GAAGAC 2 cut(s) 96, 978
BpmI CTGGAG 2 cut(s) 1362, 1452
BsaBI GATNNNNATC 1 cut(s) 717
BsaJI CCNNGG 3 cut(s) 1162, 1377, 1472
BsaWI WCCGGW 1 cut(s) 803
BsaXI ACNNNNNCTCC 2 cut(s) 1330, 1360
Bsc4I CCNNNNNNNGG 8 cut(s) 172, 289, 623, 999, 1046, 1059, 1112, 1259
Bse1I ACTGG 4 cut(s) 275, 381, 976, 1345
Bse3DI GCAATG 1 cut(s) 426
Bse8I GATNNNNATC 1 cut(s) 717
BseDI CCNNGG 3 cut(s) 1162, 1377, 1472
BseGI GGATG 4 cut(s) 103, 193, 618, 1463
BseJI GATNNNNATC 1 cut(s) 717
BseLI CCNNNNNNNGG 8 cut(s) 172, 289, 623, 999, 1046, 1059, 1112, 1259
BseMI GCAATG 1 cut(s) 426
BseMII CTCAG 3 cut(s) 367, 1428, 1443
BseNI ACTGG 4 cut(s) 275, 381, 976, 1345
BseRI GAGGAG 2 cut(s) 580, 1338
BseSI GKGCMC 2 cut(s) 74, 1250
BseXI GCAGC 2 cut(s) 163, 1240
BseYI CCCAGC 1 cut(s) 1039
BsgI GTGCAG 1 cut(s) 837
Bsh1236I CGCG 1 cut(s) 1379
Bsh1285I CGRYCG 1 cut(s) 632
BshFI GGCC 3 cut(s) 975, 1276, 1486
BshNI GGYRCC 1 cut(s) 1373
BsiEI CGRYCG 1 cut(s) 632
BsiHKAI GWGCWC 4 cut(s) 811, 828, 1348, 1438
BsiHKCI CYCGRG 1 cut(s) 1243
BsiSI CCGG 2 cut(s) 666, 804
BslFI GGGAC 2 cut(s) 862, 968
BslI CCNNNNNNNGG 8 cut(s) 172, 289, 623, 999, 1046, 1059, 1112, 1259
BsmFI GGGAC 2 cut(s) 862, 968
BsnI GGCC 3 cut(s) 975, 1276, 1486
BsoBI CYCGRG 1 cut(s) 1243
Bsp1286I GDGCHC 7 cut(s) 74, 811, 828, 1040, 1250, 1348, 1438
Bsp1407I TGTACA 1 cut(s) 255
Bsp143I GATC 7 cut(s) 169, 712, 718, 928, 1297, 1331, 1421
BspACI CCGC 5 cut(s) 59, 482, 1187, 1377, 1379
BspANI GGCC 3 cut(s) 975, 1276, 1486
BspCNI CTCAG 3 cut(s) 366, 1427, 1444
BspFNI CGCG 1 cut(s) 1379
BspHI TCATGA 1 cut(s) 579
BspLI GGNNCC 5 cut(s) 364, 1037, 1051, 1375, 1469
BspPI GGATC 2 cut(s) 1339, 1429
BspQI GCTCTTC 2 cut(s) 312, 1443
BspT107I GGYRCC 1 cut(s) 1373
BsrDI GCAATG 1 cut(s) 426
BsrGI TGTACA 1 cut(s) 255
BsrI ACTGG 4 cut(s) 275, 381, 976, 1345
BssECI CCNNGG 3 cut(s) 1162, 1377, 1472
BssMI GATC 7 cut(s) 169, 712, 718, 928, 1297, 1331, 1421
BssNAI GTATAC 1 cut(s) 1088
BssSI CACGAG 1 cut(s) 552
BssT1I CCWWGG 1 cut(s) 1162
Bst1107I GTATAC 1 cut(s) 1088
Bst2BI CACGAG 1 cut(s) 552
Bst4CI ACNGT 5 cut(s) 76, 587, 959, 984, 1131
Bst6I CTCTTC 4 cut(s) 87, 312, 445, 1443
BstAUI TGTACA 1 cut(s) 255
BstC8I GCNNGC 6 cut(s) 936, 1155, 1159, 1185, 1357, 1447
BstDEI CTNAG 3 cut(s) 353, 1414, 1452
BstDSI CCRYGG 2 cut(s) 1377, 1472
BstF5I GGATG 4 cut(s) 103, 193, 618, 1463
BstFNI CGCG 1 cut(s) 1379
BstKTI GATC 7 cut(s) 172, 715, 721, 931, 1300, 1334, 1424
BstMBI GATC 7 cut(s) 169, 712, 718, 928, 1297, 1331, 1421
BstMCI CGRYCG 1 cut(s) 632
BstMWI GCNNNNNNNGC 3 cut(s) 1234, 1352, 1442
BstNSI RCATGY 2 cut(s) 537, 1393
BstSFI CTRYAG 2 cut(s) 241, 367
BstSLI GKGCMC 2 cut(s) 74, 1250
BstUI CGCG 1 cut(s) 1379
BstV1I GCAGC 2 cut(s) 163, 1240
BstV2I GAAGAC 2 cut(s) 96, 978
BstX2I RGATCY 2 cut(s) 169, 718
BstYI RGATCY 2 cut(s) 169, 718
BstZ17I GTATAC 1 cut(s) 1088
BsuRI GGCC 3 cut(s) 975, 1276, 1486
BtgI CCRYGG 2 cut(s) 1377, 1472
BtsCI GGATG 4 cut(s) 103, 193, 618, 1463
BtsIMutI CAGTG 4 cut(s) 361, 374, 980, 1338
Cac8I GCNNGC 6 cut(s) 936, 1155, 1159, 1185, 1357, 1447
CaiI CAGNNNCTG 2 cut(s) 982, 1259
CciI TCATGA 1 cut(s) 579
Cfr13I GGNCC 1 cut(s) 1196
Cfr42I CCGCGG 1 cut(s) 1380
Csp6I GTAC 2 cut(s) 256, 301
CviAII CATG 8 cut(s) 392, 534, 580, 1058, 1270, 1313, 1390, 1488
CviQI GTAC 2 cut(s) 256, 301
DdeI CTNAG 3 cut(s) 353, 1414, 1452
DpnI GATC 7 cut(s) 171, 714, 720, 930, 1299, 1333, 1423
DpnII GATC 7 cut(s) 169, 712, 718, 928, 1297, 1331, 1421
DraI TTTAAA 1 cut(s) 1216
EaeI YGGCCR 2 cut(s) 973, 1484
Eam1104I CTCTTC 4 cut(s) 87, 312, 445, 1443
EarI CTCTTC 4 cut(s) 87, 312, 445, 1443
EciI GGCGGA 1 cut(s) 74
Ecl136II GAGCTC 2 cut(s) 1346, 1436
Eco130I CCWWGG 1 cut(s) 1162
Eco147I AGGCCT 1 cut(s) 1276
Eco24I GRGCYC 3 cut(s) 1040, 1348, 1438
Eco32I GATATC 1 cut(s) 310
Eco47I GGWCC 1 cut(s) 1196
Eco53kI GAGCTC 2 cut(s) 1346, 1436
Eco57I CTGAAG 2 cut(s) 129, 924
Eco88I CYCGRG 1 cut(s) 1243
EcoICRI GAGCTC 2 cut(s) 1346, 1436
EcoRV GATATC 1 cut(s) 310
EcoT14I CCWWGG 1 cut(s) 1162
EcoT38I GRGCYC 3 cut(s) 1040, 1348, 1438
ErhI CCWWGG 1 cut(s) 1162
FaeI CATG 8 cut(s) 395, 537, 583, 1061, 1273, 1316, 1393, 1491
FaqI GGGAC 2 cut(s) 862, 968
FatI CATG 8 cut(s) 391, 533, 579, 1057, 1269, 1312, 1389, 1487
FauNDI CATATG 1 cut(s) 995
FblI GTMKAC 2 cut(s) 157, 1087
Fnu4HI GCNGC 3 cut(s) 177, 1229, 1377
FokI GGATG 4 cut(s) 110, 180, 625, 1470
FriOI GRGCYC 3 cut(s) 1040, 1348, 1438
Fsp4HI GCNGC 3 cut(s) 177, 1229, 1377
FspBI CTAG 4 cut(s) 479, 503, 716, 1370
GluI GCNGC 3 cut(s) 177, 1229, 1377
GsaI CCCAGC 1 cut(s) 1043
GsuI CTGGAG 2 cut(s) 1362, 1452
HaeIII GGCC 3 cut(s) 975, 1276, 1486
HapII CCGG 2 cut(s) 666, 804
Hin1II CATG 8 cut(s) 395, 537, 583, 1061, 1273, 1316, 1393, 1491
HincII GTYRAC 1 cut(s) 603
HindII GTYRAC 1 cut(s) 603
HinfI GANTC 5 cut(s) 50, 119, 512, 913, 1263
HpaII CCGG 2 cut(s) 666, 804
Hpy166II GTNNAC 4 cut(s) 158, 280, 603, 1088
Hpy188I TCNGA 9 cut(s) 109, 346, 741, 780, 943, 1170, 1291, 1320, 1453
Hpy188III TCNNGA 4 cut(s) 552, 580, 716, 1260
Hpy8I GTNNAC 4 cut(s) 158, 280, 603, 1088
HpyAV CCTTC 2 cut(s) 774, 785
HpyCH4III ACNGT 5 cut(s) 76, 587, 959, 984, 1131
HpyCH4V TGCA 8 cut(s) 89, 179, 269, 419, 533, 854, 1355, 1445
HpyF10VI GCNNNNNNNGC 3 cut(s) 1234, 1352, 1442
HpyF3I CTNAG 3 cut(s) 353, 1414, 1452
Hsp92II CATG 8 cut(s) 395, 537, 583, 1061, 1273, 1316, 1393, 1491
KspI CCGCGG 1 cut(s) 1380
Kzo9I GATC 7 cut(s) 169, 712, 718, 928, 1297, 1331, 1421
LguI GCTCTTC 2 cut(s) 312, 1443
LmnI GCTCC 7 cut(s) 439, 567, 1035, 1055, 1343, 1351, 1433
Lsp1109I GCAGC 2 cut(s) 163, 1240
LweI GCATC 4 cut(s) 202, 603, 756, 1102
MaeI CTAG 4 cut(s) 479, 503, 716, 1370
MaeIII GTNAC 3 cut(s) 654, 978, 1400
MalI GATC 7 cut(s) 171, 714, 720, 930, 1299, 1333, 1423
MboI GATC 7 cut(s) 169, 712, 718, 928, 1297, 1331, 1421
MflI RGATCY 2 cut(s) 169, 718
MhlI GDGCHC 7 cut(s) 74, 811, 828, 1040, 1250, 1348, 1438
MlsI TGGCCA 1 cut(s) 975
MluCI AATT 7 cut(s) 383, 685, 1014, 1024, 1072, 1097, 1282
MluNI TGGCCA 1 cut(s) 975
MmeI TCCRAC 1 cut(s) 1298
Mox20I TGGCCA 1 cut(s) 975
MroXI GAANNNNTTC 1 cut(s) 384
MscI TGGCCA 1 cut(s) 975
MslI CAYNNNNRTG 1 cut(s) 831
Msp20I TGGCCA 1 cut(s) 975
MspA1I CMGCKG 1 cut(s) 1379
MspI CCGG 2 cut(s) 666, 804
MvnI CGCG 1 cut(s) 1379
MwoI GCNNNNNNNGC 3 cut(s) 1234, 1352, 1442
NdeI CATATG 1 cut(s) 995
NdeII GATC 7 cut(s) 169, 712, 718, 928, 1297, 1331, 1421
NlaIII CATG 8 cut(s) 395, 537, 583, 1061, 1273, 1316, 1393, 1491
NlaIV GGNNCC 5 cut(s) 364, 1037, 1051, 1375, 1469
NmeAIII GCCGAG 1 cut(s) 670
NmuCI GTSAC 2 cut(s) 978, 1400
NspI RCATGY 2 cut(s) 537, 1393
PagI TCATGA 1 cut(s) 579
PceI AGGCCT 1 cut(s) 1276
PciI ACATGT 1 cut(s) 1389
PciSI GCTCTTC 2 cut(s) 312, 1443
PdmI GAANNNNTTC 1 cut(s) 384
PfeI GAWTC 5 cut(s) 50, 119, 512, 913, 1263
PflMI CCANNNNNTGG 4 cut(s) 172, 999, 1046, 1259
PkrI GCNGC 3 cut(s) 178, 1230, 1378
PscI ACATGT 1 cut(s) 1389
Psp124BI GAGCTC 2 cut(s) 1348, 1438
PspFI CCCAGC 1 cut(s) 1039
PspN4I GGNNCC 5 cut(s) 364, 1037, 1051, 1375, 1469
PspPI GGNCC 1 cut(s) 1196
PstNI CAGNNNCTG 2 cut(s) 982, 1259
PsuI RGATCY 2 cut(s) 169, 718
RsaI GTAC 2 cut(s) 257, 302
RsaNI GTAC 2 cut(s) 256, 301
RseI CAYNNNNRTG 1 cut(s) 831
SacI GAGCTC 2 cut(s) 1348, 1438
SacII CCGCGG 1 cut(s) 1380
SapI GCTCTTC 2 cut(s) 312, 1443
SatI GCNGC 3 cut(s) 177, 1229, 1377
Sau3AI GATC 7 cut(s) 169, 712, 718, 928, 1297, 1331, 1421
Sau96I GGNCC 1 cut(s) 1196
SduI GDGCHC 7 cut(s) 74, 811, 828, 1040, 1250, 1348, 1438
SfaNI GCATC 4 cut(s) 202, 603, 756, 1102
SfcI CTRYAG 2 cut(s) 241, 367
Sfr303I CCGCGG 1 cut(s) 1380
SgrBI CCGCGG 1 cut(s) 1380
SinI GGWCC 1 cut(s) 1196
SmiMI CAYNNNNRTG 1 cut(s) 831
Sse9I AATT 7 cut(s) 383, 685, 1014, 1024, 1072, 1097, 1282
SseBI AGGCCT 1 cut(s) 1276
SsiI CCGC 5 cut(s) 59, 482, 1187, 1377, 1379
SspMI CTAG 4 cut(s) 479, 503, 716, 1370
SstI GAGCTC 2 cut(s) 1348, 1438
StuI AGGCCT 1 cut(s) 1276
StyI CCWWGG 1 cut(s) 1162
TaaI ACNGT 5 cut(s) 76, 587, 959, 984, 1131
TaqI TCGA 3 cut(s) 8, 454, 1149
TaqII GACCGA 1 cut(s) 618
TasI AATT 7 cut(s) 383, 685, 1014, 1024, 1072, 1097, 1282
TatI WGTACW 1 cut(s) 255
TauI GCSGC 1 cut(s) 1379
TfiI GAWTC 5 cut(s) 50, 119, 512, 913, 1263
TscAI CASTG 4 cut(s) 361, 381, 987, 1345
TseFI GTSAC 2 cut(s) 978, 1400
TseI GCWGC 2 cut(s) 176, 1228
Tsp45I GTSAC 2 cut(s) 978, 1400
TspDTI ATGAA 2 cut(s) 485, 596
TspGWI ACGGA 1 cut(s) 148
TspRI CASTG 4 cut(s) 361, 381, 987, 1345
Van91I CCANNNNNTGG 4 cut(s) 172, 999, 1046, 1259
VpaK11BI GGWCC 1 cut(s) 1196
XapI RAATTY 2 cut(s) 383, 1282
XbaI TCTAGA 1 cut(s) 715
XceI RCATGY 2 cut(s) 537, 1393
XmiI GTMKAC 2 cut(s) 157, 1087
XmnI GAANNNNTTC 1 cut(s) 384
XspI CTAG 4 cut(s) 479, 503, 716, 1370
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.