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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G32920 AT4G32920 AT4G32920 AT5G11700 AT5G11700 |
| fragaria_vesca | FvH4_1g06620 FvH4_2g35120 FvH4_2g35120 FvH4_2g35120 FvH4_2g35120 |
| malus_domestica | MD02G1069200.v1.1 MD08G1108700.v1.1 MD15G1089200.v1.1 MD15G1200900.v1.1 |
| prunus_persica | Prupe.1G443300_v2.0.a1 Prupe.1G443300_v2.0.a1 Prupe.1G443300_v2.0.a1 Prupe.7G216400_v2.0.a1 Prupe.7G216400_v2.0.a1 |
| pyrus_communis | pycom02g05480 pycom08g09060 pycom15g08360 |
| rosa_chinensis | RchiOBHm_Chr2g0092351 RchiOBHm_Chr6g0306851 |
| rosa_laevigata | RLG00000010761 RLG00000016302 |
| rosa_multiflora | Rmu_sc0009381.1_g000004 |
| rosa_roxburghii | Rroxscaffold_2G00149210 Rroxscaffold_7G00161420 |
| rosa_rugosa | Rorug02G0025200.1 Rorug06G0353500 |
| rosa_samantha | Rh2AG071100 Rh2BG070700 Rh2CG072100 Rh2DG069600 Rh6AG465300 Rh6BG435500 Rh6CG479700 Rh6DG466700 |
| rosa_wichuraiana | Rw2G006120 Rw6G040550 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 3516 |
| AarI | CACCTGC | 2 cut(s) | 944, 1682 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1923 |
| Acc16I | TGCGCA | 1 cut(s) | 486 |
| Acc36I | ACCTGC | 4 cut(s) | 944, 1682, 2464, 3722 |
| AccB1I | GGYRCC | 3 cut(s) | 497, 2147, 3016 |
| AccBSI | CCGCTC | 1 cut(s) | 184 |
| AccI | GTMKAC | 2 cut(s) | 2718, 3670 |
| AccII | CGCG | 3 cut(s) | 113, 3742, 3931 |
| AclWI | GGATC | 8 cut(s) | 593, 606, 1388, 1432, 1758, 2719, 3549, 3978 |
| AcoI | YGGCCR | 1 cut(s) | 3532 |
| AcvI | CACGTG | 1 cut(s) | 2855 |
| AcyI | GRCGYC | 1 cut(s) | 3017 |
| AdeI | CACNNNGTG | 1 cut(s) | 2219 |
| AfaI | GTAC | 4 cut(s) | 984, 3216, 3358, 3983 |
| AfeI | AGCGCT | 1 cut(s) | 1727 |
| AflII | CTTAAG | 1 cut(s) | 3460 |
| AflIII | ACRYGT | 3 cut(s) | 3217, 3740, 3797 |
| AgeI | ACCGGT | 1 cut(s) | 3526 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 998 |
| AhlI | ACTAGT | 2 cut(s) | 491, 659 |
| AjnI | CCWGG | 9 cut(s) | 1504, 1831, 2496, 2753, 3230, 3854, 3903, 3957, 3966 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 2127, 2159, 2501, 2533 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 3752, 3784 |
| Alw21I | GWGCWC | 2 cut(s) | 478, 2860 |
| Alw26I | GTCTC | 5 cut(s) | 206, 985, 1749, 2427, 3391 |
| Alw44I | GTGCAC | 2 cut(s) | 474, 2856 |
| AlwI | GGATC | 8 cut(s) | 593, 606, 1388, 1432, 1758, 2719, 3549, 3978 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 959, 1383, 3251 |
| Ama87I | CYCGRG | 1 cut(s) | 3826 |
| Aor51HI | AGCGCT | 1 cut(s) | 1727 |
| AoxI | GGCC | 7 cut(s) | 1492, 2097, 2576, 3203, 3532, 3819, 3901 |
| ApaLI | GTGCAC | 2 cut(s) | 474, 2856 |
| AseI | ATTAAT | 1 cut(s) | 2987 |
| AsiGI | ACCGGT | 1 cut(s) | 3526 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 871, 1224, 3638 |
| AspA2I | CCTAGG | 1 cut(s) | 1495 |
| AspLEI | GCGC | 5 cut(s) | 14, 83, 487, 1728, 3019 |
| AspS9I | GGNCC | 6 cut(s) | 1462, 1829, 2345, 2576, 3716, 3820 |
| AsuC2I | CCSGG | 4 cut(s) | 400, 503, 578, 3686 |
| AsuHPI | GGTGA | 3 cut(s) | 643, 770, 2242 |
| AsuII | TTCGAA | 3 cut(s) | 117, 422, 1267 |
| AvaI | CYCGRG | 1 cut(s) | 3826 |
| AvaII | GGWCC | 4 cut(s) | 1462, 1829, 2345, 3716 |
| AvrII | CCTAGG | 1 cut(s) | 1495 |
| BaeGI | GKGCMC | 2 cut(s) | 478, 2860 |
| BalI | TGGCCA | 1 cut(s) | 3534 |
| BamHI | GGATCC | 1 cut(s) | 598 |
| BanI | GGYRCC | 3 cut(s) | 497, 2147, 3016 |
| BanII | GRGCYC | 3 cut(s) | 1264, 2182, 2471 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2017, 2049 |
| BauI | CACGAG | 2 cut(s) | 187, 3920 |
| BbrPI | CACGTG | 1 cut(s) | 2855 |
| BbsI | GAAGAC | 3 cut(s) | 2942, 2954, 3485 |
| Bbv12I | GWGCWC | 2 cut(s) | 478, 2860 |
| BceAI | ACGGC | 3 cut(s) | 477, 1107, 1624 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 597, 631 |
| BciT130I | CCWGG | 9 cut(s) | 1506, 1833, 2498, 2755, 3232, 3856, 3905, 3959, 3968 |
| BclI | TGATCA | 2 cut(s) | 2824, 3774 |
| BcnI | CCSGG | 4 cut(s) | 400, 503, 578, 3686 |
| BcoDI | GTCTC | 5 cut(s) | 206, 985, 1749, 2427, 3391 |
| BcuI | ACTAGT | 2 cut(s) | 491, 659 |
| BfaI | CTAG | 8 cut(s) | 72, 492, 549, 660, 1496, 1676, 1929, 3051 |
| BfmI | CTRYAG | 5 cut(s) | 960, 1455, 1689, 2719, 3608 |
| BfoI | RGCGCY | 3 cut(s) | 15, 1729, 3020 |
| BfrI | CTTAAG | 1 cut(s) | 3460 |
| BfuAI | ACCTGC | 4 cut(s) | 944, 1682, 2464, 3722 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2145 |
| BlnI | CCTAGG | 1 cut(s) | 1495 |
| Bme18I | GGWCC | 4 cut(s) | 1462, 1829, 2345, 3716 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 998 |
| BmeT110I | CYCGRG | 1 cut(s) | 3826 |
| BmgT120I | GGNCC | 6 cut(s) | 1462, 1829, 2345, 2576, 3716, 3820 |
| BmiI | GGNNCC | 8 cut(s) | 159, 499, 600, 1107, 1121, 2149, 2577, 3018 |
| BmrI | ACTGGG | 2 cut(s) | 1453, 2046 |
| BmsI | GCATC | 9 cut(s) | 967, 1318, 1496, 1618, 1984, 2037, 2385, 2611, 3316 |
| BmuI | ACTGGG | 2 cut(s) | 1453, 2046 |
| BpiI | GAAGAC | 3 cut(s) | 2942, 2954, 3485 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1451, 1483 |
| BpmI | CTGGAG | 5 cut(s) | 873, 2451, 2604, 3335, 3456 |
| Bpu14I | TTCGAA | 3 cut(s) | 117, 422, 1267 |
| BpuEI | CTTGAG | 3 cut(s) | 1373, 2858, 3306 |
| BpuMI | CCSGG | 4 cut(s) | 400, 503, 578, 3686 |
| BsaAI | YACGTR | 4 cut(s) | 2855, 2911, 3356, 3798 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1998 |
| BsaHI | GRCGYC | 1 cut(s) | 3017 |
| BsaI | GGTCTC | 1 cut(s) | 206 |
| BsaWI | WCCGGW | 2 cut(s) | 305, 3526 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 634, 664, 2242, 2272 |
| Bse118I | RCCGGY | 3 cut(s) | 154, 628, 3526 |
| Bse3DI | GCAATG | 2 cut(s) | 1369, 3994 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1998 |
| BseBI | CCWGG | 9 cut(s) | 1506, 1833, 2498, 2755, 3232, 3856, 3905, 3959, 3968 |
| BseJI | GATNNNNATC | 1 cut(s) | 1998 |
| BseMI | GCAATG | 2 cut(s) | 1369, 3994 |
| BseMII | CTCAG | 3 cut(s) | 1390, 2558, 3613 |
| BseRI | GAGGAG | 3 cut(s) | 1959, 2439, 3012 |
| BseSI | GKGCMC | 2 cut(s) | 478, 2860 |
| BsgI | GTGCAG | 3 cut(s) | 849, 1182, 3944 |
| Bsh1236I | CGCG | 3 cut(s) | 113, 3742, 3931 |
| BshFI | GGCC | 7 cut(s) | 1494, 2099, 2578, 3205, 3534, 3821, 3903 |
| BshNI | GGYRCC | 3 cut(s) | 497, 2147, 3016 |
| BshTI | ACCGGT | 1 cut(s) | 3526 |
| BsiHKAI | GWGCWC | 2 cut(s) | 478, 2860 |
| BsiHKCI | CYCGRG | 1 cut(s) | 3826 |
| BsiSI | CCGG | 8 cut(s) | 155, 306, 399, 503, 578, 629, 3527, 3686 |
| BsiWI | CGTACG | 1 cut(s) | 3356 |
| BslFI | GGGAC | 4 cut(s) | 143, 979, 2088, 2095 |
| BsmAI | GTCTC | 5 cut(s) | 206, 985, 1749, 2427, 3391 |
| BsmBI | CGTCTC | 1 cut(s) | 2427 |
| BsmFI | GGGAC | 4 cut(s) | 143, 979, 2088, 2095 |
| BsmI | GAATGC | 4 cut(s) | 430, 2141, 2654, 2724 |
| BsnI | GGCC | 7 cut(s) | 1494, 2099, 2578, 3205, 3534, 3821, 3903 |
| Bso31I | GGTCTC | 1 cut(s) | 206 |
| BsoBI | CYCGRG | 1 cut(s) | 3826 |
| Bsp119I | TTCGAA | 3 cut(s) | 117, 422, 1267 |
| Bsp1286I | GDGCHC | 5 cut(s) | 478, 1264, 2182, 2471, 2860 |
| Bsp1407I | TGTACA | 1 cut(s) | 3981 |
| Bsp19I | CCATGG | 1 cut(s) | 2348 |
| BspANI | GGCC | 7 cut(s) | 1494, 2099, 2578, 3205, 3534, 3821, 3903 |
| BspCNI | CTCAG | 3 cut(s) | 1389, 2557, 3612 |
| BspFNI | CGCG | 3 cut(s) | 113, 3742, 3931 |
| BspHI | TCATGA | 2 cut(s) | 3057, 4013 |
| BspLI | GGNNCC | 8 cut(s) | 159, 499, 600, 1107, 1121, 2149, 2577, 3018 |
| BspMAI | CTGCAG | 3 cut(s) | 964, 1693, 3612 |
| BspMI | ACCTGC | 4 cut(s) | 944, 1682, 2464, 3722 |
| BspPI | GGATC | 8 cut(s) | 593, 606, 1388, 1432, 1758, 2719, 3549, 3978 |
| BspQI | GCTCTTC | 2 cut(s) | 1215, 1269 |
| BspT104I | TTCGAA | 3 cut(s) | 117, 422, 1267 |
| BspT107I | GGYRCC | 3 cut(s) | 497, 2147, 3016 |
| BspTI | CTTAAG | 1 cut(s) | 3460 |
| BspTNI | GGTCTC | 1 cut(s) | 206 |
| BsrBI | CCGCTC | 1 cut(s) | 184 |
| BsrDI | GCAATG | 2 cut(s) | 1369, 3994 |
| BsrFI | RCCGGY | 3 cut(s) | 154, 628, 3526 |
| BsrGI | TGTACA | 1 cut(s) | 3981 |
| BssAI | RCCGGY | 3 cut(s) | 154, 628, 3526 |
| BssNI | GRCGYC | 1 cut(s) | 3017 |
| BssSI | CACGAG | 2 cut(s) | 187, 3920 |
| BssT1I | CCWWGG | 5 cut(s) | 1095, 1495, 2348, 2597, 2923 |
| Bst2BI | CACGAG | 2 cut(s) | 187, 3920 |
| Bst2UI | CCWGG | 9 cut(s) | 1506, 1833, 2498, 2755, 3232, 3856, 3905, 3959, 3968 |
| Bst4CI | ACNGT | 9 cut(s) | 412, 509, 1610, 1909, 2086, 2862, 3630, 3675, 3912 |
| Bst6I | CTCTTC | 6 cut(s) | 53, 862, 1215, 1269, 1474, 2316 |
| BstACI | GRCGYC | 1 cut(s) | 3017 |
| BstAFI | CTTAAG | 1 cut(s) | 3460 |
| BstAPI | GCANNNNNTGC | 4 cut(s) | 482, 959, 1190, 2730 |
| BstAUI | TGTACA | 1 cut(s) | 3981 |
| BstBAI | YACGTR | 4 cut(s) | 2855, 2911, 3356, 3798 |
| BstBI | TTCGAA | 3 cut(s) | 117, 422, 1267 |
| BstC8I | GCNNGC | 7 cut(s) | 430, 893, 1360, 2194, 2904, 3173, 3186 |
| BstDEI | CTNAG | 9 cut(s) | 731, 1376, 1760, 2301, 2402, 2544, 3200, 3599, 3643 |
| BstDSI | CCRYGG | 2 cut(s) | 2348, 3338 |
| BstFNI | CGCG | 3 cut(s) | 113, 3742, 3931 |
| BstH2I | RGCGCY | 3 cut(s) | 15, 1729, 3020 |
| BstHHI | GCGC | 5 cut(s) | 14, 83, 487, 1728, 3019 |
| BstMAI | GTCTC | 5 cut(s) | 206, 985, 1749, 2427, 3391 |
| BstNI | CCWGG | 9 cut(s) | 1506, 1833, 2498, 2755, 3232, 3856, 3905, 3959, 3968 |
| BstNSI | RCATGY | 3 cut(s) | 2299, 3188, 3221 |
| BstSFI | CTRYAG | 5 cut(s) | 960, 1455, 1689, 2719, 3608 |
| BstSLI | GKGCMC | 2 cut(s) | 478, 2860 |
| BstUI | CGCG | 3 cut(s) | 113, 3742, 3931 |
| BstV2I | GAAGAC | 3 cut(s) | 2942, 2954, 3485 |
| BstX2I | RGATCY | 5 cut(s) | 598, 1380, 1424, 1763, 3541 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 1102, 1472, 2754 |
| BstYI | RGATCY | 5 cut(s) | 598, 1380, 1424, 1763, 3541 |
| BsuRI | GGCC | 7 cut(s) | 1494, 2099, 2578, 3205, 3534, 3821, 3903 |
| BtgI | CCRYGG | 2 cut(s) | 2348, 3338 |
| BtsI | GCAGTG | 2 cut(s) | 837, 3040 |
| BveI | ACCTGC | 4 cut(s) | 944, 1682, 2464, 3722 |
| Cac8I | GCNNGC | 7 cut(s) | 430, 893, 1360, 2194, 2904, 3173, 3186 |
| CaiI | CAGNNNCTG | 3 cut(s) | 959, 1383, 3251 |
| CciI | TCATGA | 2 cut(s) | 3057, 4013 |
| CfoI | GCGC | 5 cut(s) | 14, 83, 487, 1728, 3019 |
| Cfr10I | RCCGGY | 3 cut(s) | 154, 628, 3526 |
| Cfr13I | GGNCC | 6 cut(s) | 1462, 1829, 2345, 2576, 3716, 3820 |
| CseI | GACGC | 1 cut(s) | 3237 |
| Csp6I | GTAC | 4 cut(s) | 983, 3215, 3357, 3982 |
| CspAI | ACCGGT | 1 cut(s) | 3526 |
| CviQI | GTAC | 4 cut(s) | 983, 3215, 3357, 3982 |
| DdeI | CTNAG | 9 cut(s) | 731, 1376, 1760, 2301, 2402, 2544, 3200, 3599, 3643 |
| DinI | GGCGCC | 1 cut(s) | 3018 |
| DraI | TTTAAA | 1 cut(s) | 3472 |
| DraIII | CACNNNGTG | 1 cut(s) | 2219 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1923 |
| DriI | GACNNNNNGTC | 1 cut(s) | 998 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1923 |
| EaeI | YGGCCR | 1 cut(s) | 3532 |
| Eam1104I | CTCTTC | 6 cut(s) | 53, 862, 1215, 1269, 1474, 2316 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 998 |
| EarI | CTCTTC | 6 cut(s) | 53, 862, 1215, 1269, 1474, 2316 |
| EciI | GGCGGA | 4 cut(s) | 138, 150, 1956, 2358 |
| Eco130I | CCWWGG | 5 cut(s) | 1095, 1495, 2348, 2597, 2923 |
| Eco147I | AGGCCT | 1 cut(s) | 2099 |
| Eco24I | GRGCYC | 3 cut(s) | 1264, 2182, 2471 |
| Eco31I | GGTCTC | 1 cut(s) | 206 |
| Eco32I | GATATC | 3 cut(s) | 910, 1081, 2291 |
| Eco47I | GGWCC | 4 cut(s) | 1462, 1829, 2345, 3716 |
| Eco47III | AGCGCT | 1 cut(s) | 1727 |
| Eco72I | CACGTG | 1 cut(s) | 2855 |
| Eco88I | CYCGRG | 1 cut(s) | 3826 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1829 |
| EcoRI | GAATTC | 3 cut(s) | 241, 365, 1297 |
| EcoRII | CCWGG | 9 cut(s) | 1504, 1831, 2496, 2753, 3230, 3854, 3903, 3957, 3966 |
| EcoRV | GATATC | 3 cut(s) | 910, 1081, 2291 |
| EcoT14I | CCWWGG | 5 cut(s) | 1095, 1495, 2348, 2597, 2923 |
| EcoT22I | ATGCAT | 3 cut(s) | 610, 1999, 3331 |
| EcoT38I | GRGCYC | 3 cut(s) | 1264, 2182, 2471 |
| EgeI | GGCGCC | 1 cut(s) | 3018 |
| EheI | GGCGCC | 1 cut(s) | 3018 |
| ErhI | CCWWGG | 5 cut(s) | 1095, 1495, 2348, 2597, 2923 |
| Esp3I | CGTCTC | 1 cut(s) | 2427 |
| FaqI | GGGAC | 4 cut(s) | 143, 979, 2088, 2095 |
| FauI | CCCGC | 4 cut(s) | 24, 189, 463, 530 |
| FauNDI | CATATG | 1 cut(s) | 3208 |
| FbaI | TGATCA | 2 cut(s) | 2824, 3774 |
| FblI | GTMKAC | 2 cut(s) | 2718, 3670 |
| FriOI | GRGCYC | 3 cut(s) | 1264, 2182, 2471 |
| FspBI | CTAG | 8 cut(s) | 72, 492, 549, 660, 1496, 1676, 1929, 3051 |
| FspI | TGCGCA | 1 cut(s) | 486 |
| GlaI | GCGC | 5 cut(s) | 13, 82, 486, 1727, 3018 |
| GsuI | CTGGAG | 5 cut(s) | 873, 2451, 2604, 3335, 3456 |
| HaeII | RGCGCY | 3 cut(s) | 15, 1729, 3020 |
| HaeIII | GGCC | 7 cut(s) | 1494, 2099, 2578, 3205, 3534, 3821, 3903 |
| HapII | CCGG | 8 cut(s) | 155, 306, 399, 503, 578, 629, 3527, 3686 |
| HgaI | GACGC | 1 cut(s) | 3237 |
| HhaI | GCGC | 5 cut(s) | 14, 83, 487, 1728, 3019 |
| Hin1I | GRCGYC | 1 cut(s) | 3017 |
| Hin6I | GCGC | 5 cut(s) | 12, 81, 485, 1726, 3017 |
| HinP1I | GCGC | 5 cut(s) | 12, 81, 485, 1726, 3017 |
| HincII | GTYRAC | 2 cut(s) | 352, 3150 |
| HindII | GTYRAC | 2 cut(s) | 352, 3150 |
| HpaI | GTTAAC | 2 cut(s) | 352, 3150 |
| HpaII | CCGG | 8 cut(s) | 155, 306, 399, 503, 578, 629, 3527, 3686 |
| HphI | GGTGA | 3 cut(s) | 643, 770, 2242 |
| Hpy99I | CGWCG | 3 cut(s) | 95, 1772, 4001 |
| HpyCH4III | ACNGT | 9 cut(s) | 412, 509, 1610, 1909, 2086, 2862, 3630, 3675, 3912 |
| HpyCH4IV | ACGT | 5 cut(s) | 2854, 2910, 3355, 3797, 3999 |
| HpyF3I | CTNAG | 9 cut(s) | 731, 1376, 1760, 2301, 2402, 2544, 3200, 3599, 3643 |
| HpySE526I | ACGT | 5 cut(s) | 2854, 2910, 3355, 3797, 3999 |
| Hsp92I | GRCGYC | 1 cut(s) | 3017 |
| HspAI | GCGC | 5 cut(s) | 12, 81, 485, 1726, 3017 |
| KasI | GGCGCC | 1 cut(s) | 3016 |
| Ksp22I | TGATCA | 2 cut(s) | 2824, 3774 |
| KspAI | GTTAAC | 2 cut(s) | 352, 3150 |
| LguI | GCTCTTC | 2 cut(s) | 1215, 1269 |
| LmnI | GCTCC | 5 cut(s) | 288, 579, 1119, 1723, 2206 |
| LweI | GCATC | 9 cut(s) | 967, 1318, 1496, 1618, 1984, 2037, 2385, 2611, 3316 |
| MaeI | CTAG | 8 cut(s) | 72, 492, 549, 660, 1496, 1676, 1929, 3051 |
| MaeII | ACGT | 5 cut(s) | 2854, 2910, 3355, 3797, 3999 |
| MbiI | CCGCTC | 1 cut(s) | 184 |
| MfeI | CAATTG | 2 cut(s) | 723, 1332 |
| MflI | RGATCY | 5 cut(s) | 598, 1380, 1424, 1763, 3541 |
| MhlI | GDGCHC | 5 cut(s) | 478, 1264, 2182, 2471, 2860 |
| MlsI | TGGCCA | 1 cut(s) | 3534 |
| MluI | ACGCGT | 1 cut(s) | 3740 |
| MluNI | TGGCCA | 1 cut(s) | 3534 |
| Mly113I | GGCGCC | 1 cut(s) | 3017 |
| MlyI | GAGTC | 6 cut(s) | 2440, 2557, 2779, 2865, 3070, 3393 |
| MmeI | TCCRAC | 4 cut(s) | 114, 687, 1791, 3867 |
| Mox20I | TGGCCA | 1 cut(s) | 3534 |
| Mph1103I | ATGCAT | 3 cut(s) | 610, 1999, 3331 |
| MroXI | GAANNNNTTC | 3 cut(s) | 871, 1224, 3638 |
| MscI | TGGCCA | 1 cut(s) | 3534 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1709, 3796 |
| Msp20I | TGGCCA | 1 cut(s) | 3534 |
| MspA1I | CMGCKG | 1 cut(s) | 3171 |
| MspCI | CTTAAG | 1 cut(s) | 3460 |
| MspI | CCGG | 8 cut(s) | 155, 306, 399, 503, 578, 629, 3527, 3686 |
| MunI | CAATTG | 2 cut(s) | 723, 1332 |
| Mva1269I | GAATGC | 4 cut(s) | 430, 2141, 2654, 2724 |
| MvaI | CCWGG | 9 cut(s) | 1506, 1833, 2498, 2755, 3232, 3856, 3905, 3959, 3968 |
| MvnI | CGCG | 3 cut(s) | 113, 3742, 3931 |
| NarI | GGCGCC | 1 cut(s) | 3017 |
| NciI | CCSGG | 4 cut(s) | 400, 503, 578, 3686 |
| NcoI | CCATGG | 1 cut(s) | 2348 |
| NdeI | CATATG | 1 cut(s) | 3208 |
| NlaIV | GGNNCC | 8 cut(s) | 159, 499, 600, 1107, 1121, 2149, 2577, 3018 |
| NmuCI | GTSAC | 5 cut(s) | 2248, 2629, 3137, 3351, 3417 |
| NsbI | TGCGCA | 1 cut(s) | 486 |
| NsiI | ATGCAT | 3 cut(s) | 610, 1999, 3331 |
| NspI | RCATGY | 3 cut(s) | 2299, 3188, 3221 |
| NspV | TTCGAA | 3 cut(s) | 117, 422, 1267 |
| PaeI | GCATGC | 1 cut(s) | 3188 |
| PaeR7I | CTCGAG | 1 cut(s) | 3826 |
| PagI | TCATGA | 2 cut(s) | 3057, 4013 |
| PaqCI | CACCTGC | 2 cut(s) | 944, 1682 |
| PceI | AGGCCT | 1 cut(s) | 2099 |
| PciI | ACATGT | 1 cut(s) | 3217 |
| PciSI | GCTCTTC | 2 cut(s) | 1215, 1269 |
| PctI | GAATGC | 4 cut(s) | 430, 2141, 2654, 2724 |
| PdmI | GAANNNNTTC | 3 cut(s) | 871, 1224, 3638 |
| PfeI | GAWTC | 9 cut(s) | 86, 253, 1238, 1775, 1960, 2501, 2540, 3693, 3808 |
| Pfl23II | CGTACG | 1 cut(s) | 3356 |
| PfoI | TCCNGGA | 4 cut(s) | 576, 2496, 3854, 3966 |
| PinAI | ACCGGT | 1 cut(s) | 3526 |
| PleI | GAGTC | 6 cut(s) | 2440, 2556, 2778, 2865, 3069, 3393 |
| PluTI | GGCGCC | 1 cut(s) | 3020 |
| PmaCI | CACGTG | 1 cut(s) | 2855 |
| PmlI | CACGTG | 1 cut(s) | 2855 |
| PpsI | GAGTC | 6 cut(s) | 2440, 2556, 2778, 2865, 3069, 3393 |
| Ppu21I | YACGTR | 4 cut(s) | 2855, 2911, 3356, 3798 |
| PpuMI | RGGWCCY | 1 cut(s) | 1829 |
| PscI | ACATGT | 1 cut(s) | 3217 |
| PshBI | ATTAAT | 1 cut(s) | 2987 |
| PsiI | TTATAA | 1 cut(s) | 3516 |
| Psp5II | RGGWCCY | 1 cut(s) | 1829 |
| Psp6I | CCWGG | 9 cut(s) | 1504, 1831, 2496, 2753, 3230, 3854, 3903, 3957, 3966 |
| PspCI | CACGTG | 1 cut(s) | 2855 |
| PspGI | CCWGG | 9 cut(s) | 1504, 1831, 2496, 2753, 3230, 3854, 3903, 3957, 3966 |
| PspLI | CGTACG | 1 cut(s) | 3356 |
| PspN4I | GGNNCC | 8 cut(s) | 159, 499, 600, 1107, 1121, 2149, 2577, 3018 |
| PspPI | GGNCC | 6 cut(s) | 1462, 1829, 2345, 2576, 3716, 3820 |
| PspPPI | RGGWCCY | 1 cut(s) | 1829 |
| PspXI | VCTCGAGB | 1 cut(s) | 3826 |
| PstI | CTGCAG | 3 cut(s) | 964, 1693, 3612 |
| PstNI | CAGNNNCTG | 3 cut(s) | 959, 1383, 3251 |
| PsuI | RGATCY | 5 cut(s) | 598, 1380, 1424, 1763, 3541 |
| PvuII | CAGCTG | 1 cut(s) | 3171 |
| RsaI | GTAC | 4 cut(s) | 984, 3216, 3358, 3983 |
| RsaNI | GTAC | 4 cut(s) | 983, 3215, 3357, 3982 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1709, 3796 |
| SapI | GCTCTTC | 2 cut(s) | 1215, 1269 |
| Sau96I | GGNCC | 6 cut(s) | 1462, 1829, 2345, 2576, 3716, 3820 |
| SchI | GAGTC | 6 cut(s) | 2440, 2557, 2779, 2865, 3070, 3393 |
| SduI | GDGCHC | 5 cut(s) | 478, 1264, 2182, 2471, 2860 |
| SfaNI | GCATC | 9 cut(s) | 967, 1318, 1496, 1618, 1984, 2037, 2385, 2611, 3316 |
| SfcI | CTRYAG | 5 cut(s) | 960, 1455, 1689, 2719, 3608 |
| SfoI | GGCGCC | 1 cut(s) | 3018 |
| Sfr274I | CTCGAG | 1 cut(s) | 3826 |
| SfuI | TTCGAA | 3 cut(s) | 117, 422, 1267 |
| SinI | GGWCC | 4 cut(s) | 1462, 1829, 2345, 3716 |
| SlaI | CTCGAG | 1 cut(s) | 3826 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1709, 3796 |
| SmlI | CTYRAG | 5 cut(s) | 1352, 2873, 3321, 3460, 3826 |
| SmoI | CTYRAG | 5 cut(s) | 1352, 2873, 3321, 3460, 3826 |
| SpeI | ACTAGT | 2 cut(s) | 491, 659 |
| SphI | GCATGC | 1 cut(s) | 3188 |
| SseBI | AGGCCT | 1 cut(s) | 2099 |
| SspDI | GGCGCC | 1 cut(s) | 3016 |
| SspI | AATATT | 1 cut(s) | 1793 |
| SspMI | CTAG | 8 cut(s) | 72, 492, 549, 660, 1496, 1676, 1929, 3051 |
| StuI | AGGCCT | 1 cut(s) | 2099 |
| StyI | CCWWGG | 5 cut(s) | 1095, 1495, 2348, 2597, 2923 |
| TaaI | ACNGT | 9 cut(s) | 412, 509, 1610, 1909, 2086, 2862, 3630, 3675, 3912 |
| TaiI | ACGT | 5 cut(s) | 2857, 2913, 3358, 3800, 4002 |
| TaqII | GACCGA | 1 cut(s) | 3656 |
| TatI | WGTACW | 1 cut(s) | 3981 |
| TauI | GCSGC | 5 cut(s) | 154, 166, 169, 3821, 3934 |
| TfiI | GAWTC | 9 cut(s) | 86, 253, 1238, 1775, 1960, 2501, 2540, 3693, 3808 |
| TseFI | GTSAC | 5 cut(s) | 2248, 2629, 3137, 3351, 3417 |
| Tsp45I | GTSAC | 5 cut(s) | 2248, 2629, 3137, 3351, 3417 |
| TspGWI | ACGGA | 4 cut(s) | 591, 1785, 2428, 3486 |
| Vha464I | CTTAAG | 1 cut(s) | 3460 |
| VneI | GTGCAC | 2 cut(s) | 474, 2856 |
| VpaK11BI | GGWCC | 4 cut(s) | 1462, 1829, 2345, 3716 |
| VspI | ATTAAT | 1 cut(s) | 2987 |
| XceI | RCATGY | 3 cut(s) | 2299, 3188, 3221 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 2230, 3081, 3369 |
| XhoI | CTCGAG | 1 cut(s) | 3826 |
| XmaJI | CCTAGG | 1 cut(s) | 1495 |
| XmiI | GTMKAC | 2 cut(s) | 2718, 3670 |
| XmnI | GAANNNNTTC | 3 cut(s) | 871, 1224, 3638 |
| XspI | CTAG | 8 cut(s) | 72, 492, 549, 660, 1496, 1676, 1929, 3051 |
| Zsp2I | ATGCAT | 3 cut(s) | 610, 1999, 3331 |