Rorug06G0353500

glycine-rich protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0002500
Physical Location & Seq
Forward (+)
50205041 .. 50205421
381 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0353500.1

Sequence Viewer

Length: 381 bp
ATGATGCTCGATGAGATCATGAAGAGACTAAAGATGAGAGGTTTTGTGGGAAATACAAGCGAGGCATTGCTCCAGCTTGATGCGGAAGGAAAGGAGCTGGCTCACAGCGAAAAATTGGCACTTGCCTTGTGCTTTTTGAAGACGAGTCCTGGTACCCCAATTCGAATAGTAAAAAACCTGAGGATATGCTGCGATTGTCACGATGCCATGAAGATGATTTCCCAGGAGTTCGATCGAGAAATTGTCATCCGAGATTGCAAATTTGAAACCCATTTTAGGGAAGGTCGACTATGCTCTTGTAAAGACTATTGGTATATTATAAGTAACACCTTCATTTCTACAGTTTTACTTGACTCCCAGGATAAAACATCTACCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

126

Amino Acids

14.53

Weight (kDa)

6.81

Isoelectric Point (pI)

34.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DYW_deaminase PF14432 14 - 104 2e-28 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 320
Acc65I GGTACC 1 cut(s) 152
AccB1I GGYRCC 1 cut(s) 152
AccI GTMKAC 1 cut(s) 286
AciI CCGC 1 cut(s) 83
AcsI RAATTY 1 cut(s) 260
AfaI GTAC 1 cut(s) 154
AfiI CCNNNNNNNGG 2 cut(s) 276, 277
AgsI TTSAA 2 cut(s) 139, 266
AjnI CCWGG 3 cut(s) 148, 222, 357
AluBI AGCT 2 cut(s) 76, 97
AluI AGCT 2 cut(s) 76, 97
Alw26I GTCTC 1 cut(s) 19
ApeKI GCWGC 1 cut(s) 189
ApoI RAATTY 1 cut(s) 260
Asp718I GGTACC 1 cut(s) 152
AsuII TTCGAA 1 cut(s) 163
AxyI CCTNAGG 1 cut(s) 179
BanI GGYRCC 1 cut(s) 152
BbsI GAAGAC 1 cut(s) 146
BbvI GCAGC 1 cut(s) 176
BciT130I CCWGG 3 cut(s) 150, 224, 359
BcoDI GTCTC 1 cut(s) 19
BfmI CTRYAG 1 cut(s) 339
BisI GCNGC 1 cut(s) 190
BlsI GCNGC 1 cut(s) 191
Bme1390I CCNGG 3 cut(s) 150, 224, 359
BmiI GGNNCC 1 cut(s) 154
BmrFI CCNGG 3 cut(s) 150, 224, 359
BmsI GCATC 2 cut(s) 70, 193
BpiI GAAGAC 1 cut(s) 146
BpmI CTGGAG 1 cut(s) 56
Bpu14I TTCGAA 1 cut(s) 163
BsaJI CCNNGG 2 cut(s) 222, 357
Bsc4I CCNNNNNNNGG 2 cut(s) 276, 277
Bse21I CCTNAGG 1 cut(s) 179
Bse3DI GCAATG 1 cut(s) 65
BseBI CCWGG 3 cut(s) 150, 224, 359
BseDI CCNNGG 2 cut(s) 222, 357
BseGI GGATG 1 cut(s) 246
BseLI CCNNNNNNNGG 2 cut(s) 276, 277
BseMI GCAATG 1 cut(s) 65
BseMII CTCAG 1 cut(s) 170
BseXI GCAGC 1 cut(s) 176
Bsh1285I CGRYCG 1 cut(s) 235
BshNI GGYRCC 1 cut(s) 152
BsiEI CGRYCG 1 cut(s) 235
BslI CCNNNNNNNGG 2 cut(s) 276, 277
BsmAI GTCTC 1 cut(s) 19
Bsp119I TTCGAA 1 cut(s) 163
Bsp143I GATC 2 cut(s) 15, 232
BspACI CCGC 1 cut(s) 83
BspCNI CTCAG 1 cut(s) 171
BspHI TCATGA 1 cut(s) 18
BspLI GGNNCC 1 cut(s) 154
BspT104I TTCGAA 1 cut(s) 163
BspT107I GGYRCC 1 cut(s) 152
BsrDI GCAATG 1 cut(s) 65
BssECI CCNNGG 2 cut(s) 222, 357
BssMI GATC 2 cut(s) 15, 232
Bst2UI CCWGG 3 cut(s) 150, 224, 359
Bst4CI ACNGT 1 cut(s) 343
Bst6I CTCTTC 1 cut(s) 17
BstBI TTCGAA 1 cut(s) 163
BstC8I GCNNGC 1 cut(s) 99
BstDEI CTNAG 1 cut(s) 179
BstF5I GGATG 1 cut(s) 246
BstKTI GATC 2 cut(s) 18, 235
BstMAI GTCTC 1 cut(s) 19
BstMBI GATC 2 cut(s) 15, 232
BstMCI CGRYCG 1 cut(s) 235
BstNI CCWGG 3 cut(s) 150, 224, 359
BstSCI CCNGG 3 cut(s) 148, 222, 357
BstSFI CTRYAG 1 cut(s) 339
BstV1I GCAGC 1 cut(s) 176
BstV2I GAAGAC 1 cut(s) 146
Bsu36I CCTNAGG 1 cut(s) 179
BtsCI GGATG 1 cut(s) 246
Cac8I GCNNGC 1 cut(s) 99
CciI TCATGA 1 cut(s) 18
Csp6I GTAC 1 cut(s) 153
CviAII CATG 3 cut(s) 19, 208, 376
CviJI RGCY 3 cut(s) 76, 97, 101
CviKI_1 RGCY 3 cut(s) 76, 97, 101
CviQI GTAC 1 cut(s) 153
DdeI CTNAG 1 cut(s) 179
DpnI GATC 2 cut(s) 17, 234
DpnII GATC 2 cut(s) 15, 232
Eam1104I CTCTTC 1 cut(s) 17
EarI CTCTTC 1 cut(s) 17
Eco81I CCTNAGG 1 cut(s) 179
EcoRII CCWGG 3 cut(s) 148, 222, 357
FaeI CATG 3 cut(s) 22, 211, 379
FaiI YATR 7 cut(s) 20, 187, 209, 292, 315, 320, 377
FatI CATG 3 cut(s) 18, 207, 375
FblI GTMKAC 1 cut(s) 286
Fnu4HI GCNGC 1 cut(s) 190
FokI GGATG 1 cut(s) 233
Fsp4HI GCNGC 1 cut(s) 190
GluI GCNGC 1 cut(s) 190
GsuI CTGGAG 1 cut(s) 56
Hin1II CATG 3 cut(s) 22, 211, 379
HincII GTYRAC 1 cut(s) 287
HindII GTYRAC 1 cut(s) 287
HinfI GANTC 2 cut(s) 145, 353
Hpy166II GTNNAC 1 cut(s) 287
Hpy188I TCNGA 1 cut(s) 251
Hpy188III TCNNGA 3 cut(s) 19, 200, 236
Hpy8I GTNNAC 1 cut(s) 287
HpyAV CCTTC 3 cut(s) 80, 275, 340
HpyCH4III ACNGT 1 cut(s) 343
HpyCH4V TGCA 1 cut(s) 258
HpyF3I CTNAG 1 cut(s) 179
Hsp92II CATG 3 cut(s) 22, 211, 379
KpnI GGTACC 1 cut(s) 156
Kzo9I GATC 2 cut(s) 15, 232
LmnI GCTCC 2 cut(s) 75, 94
LpnPI CCDG 9 cut(s) 83, 86, 135, 162, 191, 209, 236, 344, 371
Lsp1109I GCAGC 1 cut(s) 176
LweI GCATC 2 cut(s) 70, 193
MaeIII GTNAC 2 cut(s) 197, 323
MalI GATC 2 cut(s) 17, 234
MboI GATC 2 cut(s) 15, 232
MboII GAAGA 3 cut(s) 34, 151, 223
MluCI AATT 4 cut(s) 113, 159, 240, 260
MlyI GAGTC 2 cut(s) 154, 347
MnlI CCTC 3 cut(s) 32, 55, 174
MslI CAYNNNNRTG 1 cut(s) 212
MspR9I CCNGG 3 cut(s) 150, 224, 359
MvaI CCWGG 3 cut(s) 150, 224, 359
NdeII GATC 2 cut(s) 15, 232
NlaIII CATG 3 cut(s) 22, 211, 379
NlaIV GGNNCC 1 cut(s) 154
NmuCI GTSAC 1 cut(s) 197
NspV TTCGAA 1 cut(s) 163
PagI TCATGA 1 cut(s) 18
PkrI GCNGC 1 cut(s) 191
Ple19I CGATCG 1 cut(s) 235
PleI GAGTC 2 cut(s) 153, 347
PpsI GAGTC 2 cut(s) 153, 347
PsiI TTATAA 1 cut(s) 320
Psp6I CCWGG 3 cut(s) 148, 222, 357
PspGI CCWGG 3 cut(s) 148, 222, 357
PspN4I GGNNCC 1 cut(s) 154
PvuI CGATCG 1 cut(s) 235
RsaI GTAC 1 cut(s) 154
RsaNI GTAC 1 cut(s) 153
RseI CAYNNNNRTG 1 cut(s) 212
SalI GTCGAC 1 cut(s) 285
SatI GCNGC 1 cut(s) 190
Sau3AI GATC 2 cut(s) 15, 232
SchI GAGTC 2 cut(s) 154, 347
ScrFI CCNGG 3 cut(s) 150, 224, 359
SetI ASST 6 cut(s) 43, 78, 99, 180, 286, 332
SfaNI GCATC 2 cut(s) 70, 193
SfcI CTRYAG 1 cut(s) 339
SfuI TTCGAA 1 cut(s) 163
SmiMI CAYNNNNRTG 1 cut(s) 212
Sse9I AATT 4 cut(s) 113, 159, 240, 260
SsiI CCGC 1 cut(s) 83
StyD4I CCNGG 3 cut(s) 148, 222, 357
TaaI ACNGT 1 cut(s) 343
TaqI TCGA 5 cut(s) 9, 163, 231, 235, 286
TasI AATT 4 cut(s) 113, 159, 240, 260
TseFI GTSAC 1 cut(s) 197
TseI GCWGC 1 cut(s) 189
Tsp45I GTSAC 1 cut(s) 197
TspDTI ATGAA 3 cut(s) 35, 224, 322
XapI RAATTY 1 cut(s) 260
XmiI GTMKAC 1 cut(s) 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.