Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0007911

Physical Location & Seq

Genomic Coordinates Reverse (-)

6619065 .. 6621322

Gene Structure 2258 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g09580.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGCTCGGAGCCGGAGCTCAATGCCGCGGCCCGGATCGCTTAGCTGCCATCCGTCCGATTCCAAACACTTCTTCTTCTTCCTCCTCCTCTTCGCGCCACTTGGTCTGCACGGTTCGGTTAGGGTTTATCAGATCACCAAAACGGTGCAATTCGCTCAAATCGCTCCGCATTGCCTGCTGCAACTCTTCCTCTCCCTCCAGATCCAGCAAAGCCGACGATCATCACGATTTCGACTACATCCAAGCTTCCCTCCTCCTCTCAGAAACTATATCTCACTACCGTATGCAAAGGCGAGGTTTTCAAGAAGAGACGAAATGGCAGTCATCTGGTAAAATGCGTCCCTTTTCCGTCCGAGCCAGCCGACAACATAATTTTTTCGATACATTAGGCCGAAACTTTGTCCAGCGTTTCCAAAGTCCGACGATTTTTCTCAAGATTTCTTGTGATGGAGACTTTTTGCTTCCAATTGTTGTAGGCGAATTCGCGATCGAAAATCTCATAGACGGCCAATGGGGAGATGAGAATGGGGACTCCCCGGATCAATTTCACTTTATGAGAAATCTCGTTGACAAACTCGGCTATCAAGTGAATATGGTGAGAATTACGGAAAGAGTGCGGAATAATTACTTTGCCAGATTGTACTTTAGCAAGCCAGGGGAAAATGGCTTTCTTAGTGTTGATGCACGCCCATCAGACGCCATAAATTTCGCACATAGATGCAAGGCACCCATATATGTAAACAAACAGATTGTCTTAACAGATGCAGTGAGGATCAGTTATGGGATGGGCGGAGGGCGCGTGACAAAGTCTTGTTATGATGTATCTCTTGACAGCGCTATAGAGGGCCCAGATTCTTTAATTCAAGAACTTGGTTTGGTCAAGAATATCAATCTAGCTATCAAAGAGGAAAGATATAAAGATGCAGCCATATGGAGAGACGAACTATTCAAGCTTCGCAAGTCAATTCAAGGGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNase-RNase UVR

Protein Analysis

326

Amino Acids

36.69

Weight (kDa)

9.34

Isoelectric Point (pI)

47.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007911)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66050 AT5G66050 AT5G66050 AT5G66050
fragaria_vesca	FvH4_1g10980 FvH4_1g10980 FvH4_1g10980 FvH4_1g10980
malus_domestica	MD02G1122800.v1.1 MD15G1236800.v1.1
prunus_persica	Prupe.7G175700_v2.0.a1
pyrus_communis	pycom02g09580 pycom15g21060
rosa_chinensis	RchiOBHm_Chr2g0098241
rosa_laevigata	RLG00000016778
rosa_multiflora	Rmu_co8414957.1_g000001 Rmu_sc0009178.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144130
rosa_rugosa	Rorug02G0071400 Rorug02G0071500
rosa_samantha	Rh2AG118500 Rh2BG121600 Rh2CG123200
rosa_wichuraiana	Rw2G009300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	724
AccII	CGCG	4 cut(s)	27, 94, 485, 798
AciI	CCGC	5 cut(s)	25, 27, 166, 616, 789
AclWI	GGATC	4 cut(s)	42, 195, 546, 779
AcoI	YGGCCR	1 cut(s)	505
AcsI	RAATTY	2 cut(s)	479, 703
AcyI	GRCGYC	1 cut(s)	696
AfaI	GTAC	1 cut(s)	641
AfeI	AGCGCT	1 cut(s)	835
AfiI	CCNNNNNNNGG	1 cut(s)	31
AgsI	TTSAA	4 cut(s)	302, 863, 949, 968
AjnI	CCWGG	1 cut(s)	652
AjuI	GAANNNNNNNTTGG	2 cut(s)	55, 87
AluBI	AGCT	5 cut(s)	17, 44, 245, 896, 952
AluI	AGCT	5 cut(s)	17, 44, 245, 896, 952
Alw21I	GWGCWC	1 cut(s)	19
Alw26I	GTCTC	3 cut(s)	302, 444, 930
AlwI	GGATC	4 cut(s)	42, 195, 546, 779
Aor51HI	AGCGCT	1 cut(s)	835
AoxI	GGCC	5 cut(s)	28, 388, 505, 844, 971
ApaI	GGGCCC	1 cut(s)	848
ApeKI	GCWGC	3 cut(s)	44, 177, 923
ApoI	RAATTY	2 cut(s)	479, 703
ArsI	GACNNNNNNTTYG	4 cut(s)	305, 337, 735, 767
AspLEI	GCGC	3 cut(s)	96, 798, 836
AspS9I	GGNCC	4 cut(s)	29, 844, 845, 971
AsuC2I	CCSGG	2 cut(s)	32, 536
AsuHPI	GGTGA	2 cut(s)	126, 607
BaeGI	GKGCMC	1 cut(s)	848
BanI	GGYRCC	1 cut(s)	724
BanII	GRGCYC	2 cut(s)	19, 848
Bbv12I	GWGCWC	1 cut(s)	19
BbvI	GCAGC	3 cut(s)	31, 164, 935
BccI	CCATC	4 cut(s)	56, 440, 697, 778
BceAI	ACGGC	1 cut(s)	520
BciT130I	CCWGG	1 cut(s)	654
BcnI	CCSGG	2 cut(s)	32, 536
BcoDI	GTCTC	3 cut(s)	302, 444, 930
BfaI	CTAG	1 cut(s)	893
BfmI	CTRYAG	1 cut(s)	837
BfoI	RGCGCY	1 cut(s)	837
BisI	GCNGC	5 cut(s)	25, 28, 45, 178, 924
BlpI	GCTNAGC	1 cut(s)	40
BlsI	GCNGC	5 cut(s)	26, 29, 46, 179, 925
Bme1390I	CCNGG	3 cut(s)	32, 536, 654
BmgT120I	GGNCC	4 cut(s)	29, 844, 845, 971
BmiI	GGNNCC	3 cut(s)	10, 726, 846
BmrFI	CCNGG	3 cut(s)	32, 536, 654
BmsI	GCATC	4 cut(s)	670, 707, 751, 910
BpmI	CTGGAG	1 cut(s)	181
Bpu1102I	GCTNAGC	1 cut(s)	40
BpuEI	CTTGAG	1 cut(s)	416
BpuMI	CCSGG	2 cut(s)	32, 536
BsaHI	GRCGYC	1 cut(s)	696
BsaJI	CCNNGG	3 cut(s)	25, 534, 653
BsaXI	ACNNNNNCTCC	2 cut(s)	783, 813
Bsc4I	CCNNNNNNNGG	1 cut(s)	31
Bse3DI	GCAATG	1 cut(s)	168
BseBI	CCWGG	1 cut(s)	654
BseDI	CCNNGG	3 cut(s)	25, 534, 653
BseGI	GGATG	3 cut(s)	48, 237, 789
BseLI	CCNNNNNNNGG	1 cut(s)	31
BseMI	GCAATG	1 cut(s)	168
BseMII	CTCAG	1 cut(s)	273
BseRI	GAGGAG	4 cut(s)	73, 76, 242, 245
BseSI	GKGCMC	1 cut(s)	848
BseXI	GCAGC	3 cut(s)	31, 164, 935
BsgI	GTGCAG	1 cut(s)	91
Bsh1236I	CGCG	4 cut(s)	27, 94, 485, 798
Bsh1285I	CGRYCG	1 cut(s)	489
BshFI	GGCC	5 cut(s)	30, 390, 507, 846, 973
BshNI	GGYRCC	1 cut(s)	724
BsiEI	CGRYCG	1 cut(s)	489
BsiHKAI	GWGCWC	1 cut(s)	19
BsiSI	CCGG	3 cut(s)	12, 32, 536
BslFI	GGGAC	2 cut(s)	324, 542
BslI	CCNNNNNNNGG	1 cut(s)	31
BsmAI	GTCTC	3 cut(s)	302, 444, 930
BsmBI	CGTCTC	2 cut(s)	302, 930
BsmFI	GGGAC	2 cut(s)	324, 542
BsnI	GGCC	5 cut(s)	30, 390, 507, 846, 973
Bsp120I	GGGCCC	1 cut(s)	844
Bsp1286I	GDGCHC	2 cut(s)	19, 848
Bsp143I	GATC	7 cut(s)	34, 131, 200, 217, 486, 538, 771
Bsp1720I	GCTNAGC	1 cut(s)	40
Bsp68I	TCGCGA	1 cut(s)	485
BspACI	CCGC	5 cut(s)	25, 27, 166, 616, 789
BspANI	GGCC	5 cut(s)	30, 390, 507, 846, 973
BspCNI	CTCAG	1 cut(s)	272
BspFNI	CGCG	4 cut(s)	27, 94, 485, 798
BspLI	GGNNCC	3 cut(s)	10, 726, 846
BspPI	GGATC	4 cut(s)	42, 195, 546, 779
BspT107I	GGYRCC	1 cut(s)	724
BsrDI	GCAATG	1 cut(s)	168
BssECI	CCNNGG	3 cut(s)	25, 534, 653
BssMI	GATC	7 cut(s)	34, 131, 200, 217, 486, 538, 771
BssNI	GRCGYC	1 cut(s)	696
Bst2UI	CCWGG	1 cut(s)	654
Bst4CI	ACNGT	3 cut(s)	112, 144, 281
Bst6I	CTCTTC	3 cut(s)	94, 190, 300
BstACI	GRCGYC	1 cut(s)	696
BstAPI	GCANNNNNTGC	1 cut(s)	174
BstC8I	GCNNGC	4 cut(s)	175, 358, 650, 685
BstDEI	CTNAG	3 cut(s)	40, 259, 671
BstDSI	CCRYGG	1 cut(s)	25
BstF5I	GGATG	3 cut(s)	48, 237, 789
BstFNI	CGCG	4 cut(s)	27, 94, 485, 798
BstH2I	RGCGCY	1 cut(s)	837
BstHHI	GCGC	3 cut(s)	96, 798, 836
BstKTI	GATC	7 cut(s)	37, 134, 203, 220, 489, 541, 774
BstMAI	GTCTC	3 cut(s)	302, 444, 930
BstMBI	GATC	7 cut(s)	34, 131, 200, 217, 486, 538, 771
BstMCI	CGRYCG	1 cut(s)	489
BstMWI	GCNNNNNNNGC	4 cut(s)	36, 160, 174, 795
BstNI	CCWGG	1 cut(s)	654
BstSCI	CCNGG	3 cut(s)	30, 534, 652
BstSFI	CTRYAG	1 cut(s)	837
BstSLI	GKGCMC	1 cut(s)	848
BstUI	CGCG	4 cut(s)	27, 94, 485, 798
BstV1I	GCAGC	3 cut(s)	31, 164, 935
BstX2I	RGATCY	1 cut(s)	200
BstYI	RGATCY	1 cut(s)	200
BsuRI	GGCC	5 cut(s)	30, 390, 507, 846, 973
BtgI	CCRYGG	1 cut(s)	25
BtsCI	GGATG	3 cut(s)	48, 237, 789
BtsI	GCAGTG	1 cut(s)	771
BtsIMutI	CAGTG	1 cut(s)	771
BtuMI	TCGCGA	1 cut(s)	485
Cac8I	GCNNGC	4 cut(s)	175, 358, 650, 685
CfoI	GCGC	3 cut(s)	96, 798, 836
Cfr13I	GGNCC	4 cut(s)	29, 844, 845, 971
Cfr42I	CCGCGG	1 cut(s)	28
CseI	GACGC	2 cut(s)	326, 704
Csp6I	GTAC	1 cut(s)	640
CviQI	GTAC	1 cut(s)	640
DdeI	CTNAG	3 cut(s)	40, 259, 671
DpnI	GATC	7 cut(s)	36, 133, 202, 219, 488, 540, 773
DpnII	GATC	7 cut(s)	34, 131, 200, 217, 486, 538, 771
EaeI	YGGCCR	1 cut(s)	505
Eam1104I	CTCTTC	3 cut(s)	94, 190, 300
EarI	CTCTTC	3 cut(s)	94, 190, 300
EciI	GGCGGA	1 cut(s)	804
Ecl136II	GAGCTC	1 cut(s)	17
Eco24I	GRGCYC	2 cut(s)	19, 848
Eco47III	AGCGCT	1 cut(s)	835
Eco53kI	GAGCTC	1 cut(s)	17
EcoICRI	GAGCTC	1 cut(s)	17
EcoO109I	RGGNCCY	2 cut(s)	844, 971
EcoRI	GAATTC	1 cut(s)	479
EcoRII	CCWGG	1 cut(s)	652
EcoT38I	GRGCYC	2 cut(s)	19, 848
Esp3I	CGTCTC	2 cut(s)	302, 930
FaqI	GGGAC	2 cut(s)	324, 542
FauNDI	CATATG	1 cut(s)	929
Fnu4HI	GCNGC	5 cut(s)	25, 28, 45, 178, 924
FokI	GGATG	3 cut(s)	35, 224, 796
FriOI	GRGCYC	2 cut(s)	19, 848
Fsp4HI	GCNGC	5 cut(s)	25, 28, 45, 178, 924
FspBI	CTAG	1 cut(s)	893
GlaI	GCGC	3 cut(s)	95, 797, 835
GluI	GCNGC	5 cut(s)	25, 28, 45, 178, 924
GsuI	CTGGAG	1 cut(s)	181
HaeII	RGCGCY	1 cut(s)	837
HaeIII	GGCC	5 cut(s)	30, 390, 507, 846, 973
HapII	CCGG	3 cut(s)	12, 32, 536
HgaI	GACGC	2 cut(s)	326, 704
HhaI	GCGC	3 cut(s)	96, 798, 836
Hin1I	GRCGYC	1 cut(s)	696
Hin6I	GCGC	3 cut(s)	94, 796, 834
HinP1I	GCGC	3 cut(s)	94, 796, 834
HincII	GTYRAC	1 cut(s)	568
HindII	GTYRAC	1 cut(s)	568
HindIII	AAGCTT	2 cut(s)	243, 950
HinfI	GANTC	3 cut(s)	58, 530, 851
HpaII	CCGG	3 cut(s)	12, 32, 536
HphI	GGTGA	2 cut(s)	126, 607
Hpy166II	GTNNAC	2 cut(s)	568, 739
Hpy188I	TCNGA	7 cut(s)	8, 57, 131, 262, 353, 420, 694
Hpy188III	TCNNGA	8 cut(s)	198, 224, 302, 433, 484, 827, 863, 880
Hpy8I	GTNNAC	2 cut(s)	568, 739
Hpy99I	CGWCG	2 cut(s)	218, 424
HpyCH4III	ACNGT	3 cut(s)	112, 144, 281
HpyCH4V	TGCA	8 cut(s)	108, 147, 180, 286, 683, 720, 764, 923
HpyF10VI	GCNNNNNNNGC	4 cut(s)	36, 160, 174, 795
HpyF3I	CTNAG	3 cut(s)	40, 259, 671
Hsp92I	GRCGYC	1 cut(s)	696
HspAI	GCGC	3 cut(s)	94, 796, 834
KspI	CCGCGG	1 cut(s)	28
Kzo9I	GATC	7 cut(s)	34, 131, 200, 217, 486, 538, 771
LmnI	GCTCC	3 cut(s)	8, 14, 168
Lsp1109I	GCAGC	3 cut(s)	31, 164, 935
LweI	GCATC	4 cut(s)	670, 707, 751, 910
MaeI	CTAG	1 cut(s)	893
MaeIII	GTNAC	1 cut(s)	799
MalI	GATC	7 cut(s)	36, 133, 202, 219, 488, 540, 773
MboI	GATC	7 cut(s)	34, 131, 200, 217, 486, 538, 771
MboII	GAAGA	6 cut(s)	63, 66, 69, 81, 177, 317
MfeI	CAATTG	1 cut(s)	465
MflI	RGATCY	1 cut(s)	200
MhlI	GDGCHC	2 cut(s)	19, 848
MlyI	GAGTC	1 cut(s)	524
MmeI	TCCRAC	1 cut(s)	443
MseI	TTAA	2 cut(s)	755, 857
MslI	CAYNNNNRTG	1 cut(s)	715
MspA1I	CMGCKG	1 cut(s)	27
MspI	CCGG	3 cut(s)	12, 32, 536
MspR9I	CCNGG	3 cut(s)	32, 536, 654
MunI	CAATTG	1 cut(s)	465
MvaI	CCWGG	1 cut(s)	654
MvnI	CGCG	4 cut(s)	27, 94, 485, 798
MwoI	GCNNNNNNNGC	4 cut(s)	36, 160, 174, 795
NciI	CCSGG	2 cut(s)	32, 536
NdeI	CATATG	1 cut(s)	929
NdeII	GATC	7 cut(s)	34, 131, 200, 217, 486, 538, 771
NlaIV	GGNNCC	3 cut(s)	10, 726, 846
NmeAIII	GCCGAG	1 cut(s)	555
NmuCI	GTSAC	1 cut(s)	799
NruI	TCGCGA	1 cut(s)	485
PcsI	WCGNNNNNNNCGW	1 cut(s)	222
PfeI	GAWTC	2 cut(s)	58, 851
PflFI	GACNNNGTC	1 cut(s)	805
PkrI	GCNGC	5 cut(s)	26, 29, 46, 179, 925
Ple19I	CGATCG	1 cut(s)	489
PleI	GAGTC	1 cut(s)	524
PpsI	GAGTC	1 cut(s)	524
Psp124BI	GAGCTC	1 cut(s)	19
Psp6I	CCWGG	1 cut(s)	652
PspGI	CCWGG	1 cut(s)	652
PspN4I	GGNNCC	3 cut(s)	10, 726, 846
PspOMI	GGGCCC	1 cut(s)	844
PspPI	GGNCC	4 cut(s)	29, 844, 845, 971
PsuI	RGATCY	1 cut(s)	200
PsyI	GACNNNGTC	1 cut(s)	805
PvuI	CGATCG	1 cut(s)	489
RruI	TCGCGA	1 cut(s)	485
RsaI	GTAC	1 cut(s)	641
RsaNI	GTAC	1 cut(s)	640
RseI	CAYNNNNRTG	1 cut(s)	715
SacI	GAGCTC	1 cut(s)	19
SacII	CCGCGG	1 cut(s)	28
SaqAI	TTAA	2 cut(s)	755, 857
SatI	GCNGC	5 cut(s)	25, 28, 45, 178, 924
Sau3AI	GATC	7 cut(s)	34, 131, 200, 217, 486, 538, 771
Sau96I	GGNCC	4 cut(s)	29, 844, 845, 971
SchI	GAGTC	1 cut(s)	524
ScrFI	CCNGG	3 cut(s)	32, 536, 654
SduI	GDGCHC	2 cut(s)	19, 848
SetI	ASST	6 cut(s)	19, 46, 247, 298, 898, 954
SfaNI	GCATC	4 cut(s)	670, 707, 751, 910
SfcI	CTRYAG	1 cut(s)	837
Sfr303I	CCGCGG	1 cut(s)	28
SgrBI	CCGCGG	1 cut(s)	28
SmiMI	CAYNNNNRTG	1 cut(s)	715
SmlI	CTYRAG	1 cut(s)	431
SmoI	CTYRAG	1 cut(s)	431
SsiI	CCGC	5 cut(s)	25, 27, 166, 616, 789
SspMI	CTAG	1 cut(s)	893
SstI	GAGCTC	1 cut(s)	19
StyD4I	CCNGG	3 cut(s)	30, 534, 652
TaaI	ACNGT	3 cut(s)	112, 144, 281
TaqI	TCGA	3 cut(s)	231, 378, 489
TatI	WGTACW	1 cut(s)	639
TauI	GCSGC	2 cut(s)	27, 30
TfiI	GAWTC	2 cut(s)	58, 851
Tru1I	TTAA	2 cut(s)	755, 857
Tru9I	TTAA	2 cut(s)	755, 857
TscAI	CASTG	1 cut(s)	771
TseFI	GTSAC	1 cut(s)	799
TseI	GCWGC	3 cut(s)	44, 177, 923
Tsp45I	GTSAC	1 cut(s)	799
TspGWI	ACGGA	3 cut(s)	41, 337, 620
TspRI	CASTG	1 cut(s)	771
Tth111I	GACNNNGTC	1 cut(s)	805
XapI	RAATTY	2 cut(s)	479, 703
XspI	CTAG	1 cut(s)	893

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.