Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0007911

Physical Location & Seq

Genomic Coordinates Forward (+)

82108688 .. 82111257

Gene Structure 2570 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00144130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGATGCTCGGAGCTGCCCAATTCTCCGTCGCCGATCATCGCTCGAATGCCGTTTTTCCGATCCCAAATACTCGGCCAGCTGTTTCTTCTTCTTCTTCCTCCTCCTCTTCTCCTCACACCTCCGATTTCGTCGTCGTCCGGTTAGGTTTCAGACCCAAACGCCGCCACCGTGGACTCAAATCGATCCGCATTACCTGCAACTCTTCCCCTCACGACAGATCCCTTAATTCCGATCATCAAAACTACGAGTATATCCAAGCTTCCCTCTTGCTTCCAGAAACTATATCTCACTACCACAGGAACTTTCTCCACCGTTTCCAAAGTCCTACCATTTTCCTCAAGATTTCGTGTGACGGAGACTTTTTGCTTCCAATTGTTGTAGGCGAACTTGCGATAGAGAATCTCATAAATGGCCACTGGGGAGATGAATTTGGGGATTCCCCAGACCAGTTTCTGTTTGTGAAAAATCTTGTCGAAAAACTTGACCATCAAGTGAATATGGTGAGAATTACAGAAAGAGTGCTGAATACTTACTTTGCCAGATTGTATTTTAGCAAGGTGCCAGGCAAAAGTGACATTCTTAGTGTGGATGCACGTCCATCAGATGCCATAAATGTTGCATATAGATGCAAGGCACCCATATATGTAAATAAACAGATTGTTTTAAAAGATGCTGTAAGAATCAGTTATGGGATGGGCAGAATGCGTGATATGAAGTCTACTTACGATGTCTCTCTTGATAGTGCTGCAGATGGTCCCAATTTTTTAGCTCAAGAACTTGTTTTGGTGAAGAAGATCGAATTAGCTATCAAAGAGGAAAGATATAAGGATGCAGATTATCCATATGCTGTTATATTGATTGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNase-RNase UVR

Protein Analysis

288

Amino Acids

32.54

Weight (kDa)

8.85

Isoelectric Point (pI)

41.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BFN_dom	PF02577	119 - 227	1.2e-17	Bifunctional nuclease domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007911)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66050 AT5G66050 AT5G66050 AT5G66050
fragaria_vesca	FvH4_1g10980 FvH4_1g10980 FvH4_1g10980 FvH4_1g10980
malus_domestica	MD02G1122800.v1.1 MD15G1236800.v1.1
prunus_persica	Prupe.7G175700_v2.0.a1
pyrus_communis	pycom02g09580 pycom15g21060
rosa_chinensis	RchiOBHm_Chr2g0098241
rosa_laevigata	RLG00000016778
rosa_multiflora	Rmu_co8414957.1_g000001 Rmu_sc0009178.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144130
rosa_rugosa	Rorug02G0071400 Rorug02G0071500
rosa_samantha	Rh2AG118500 Rh2BG121600 Rh2CG123200
rosa_wichuraiana	Rw2G009300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	203
AccB1I	GGYRCC	2 cut(s)	559, 634
AccI	GTMKAC	1 cut(s)	719
AciI	CCGC	2 cut(s)	163, 187
AclWI	GGATC	3 cut(s)	55, 178, 213
AcoI	YGGCCR	2 cut(s)	74, 412
AcsI	RAATTY	1 cut(s)	428
AjiI	CACGTC	1 cut(s)	596
AjnI	CCWGG	1 cut(s)	562
AluBI	AGCT	5 cut(s)	14, 80, 260, 770, 806
AluI	AGCT	5 cut(s)	14, 80, 260, 770, 806
Alw26I	GTCTC	2 cut(s)	351, 736
AlwI	GGATC	3 cut(s)	55, 178, 213
AlwNI	CAGNNNCTG	1 cut(s)	454
AoxI	GGCC	2 cut(s)	74, 412
ApeKI	GCWGC	2 cut(s)	14, 746
ApoI	RAATTY	1 cut(s)	428
AspS9I	GGNCC	1 cut(s)	755
AsuHPI	GGTGA	2 cut(s)	514, 799
AvaII	GGWCC	1 cut(s)	755
BalI	TGGCCA	1 cut(s)	414
BanI	GGYRCC	2 cut(s)	559, 634
BarI	GAAGNNNNNNTAC	2 cut(s)	707, 739
BbvI	GCAGC	1 cut(s)	733
BccI	CCATC	4 cut(s)	495, 607, 688, 746
BceAI	ACGGC	1 cut(s)	35
BciT130I	CCWGG	1 cut(s)	564
BcoDI	GTCTC	2 cut(s)	351, 736
BfmI	CTRYAG	1 cut(s)	747
BfuAI	ACCTGC	1 cut(s)	203
BisI	GCNGC	3 cut(s)	15, 163, 747
BlsI	GCNGC	3 cut(s)	16, 164, 748
Bme1390I	CCNGG	1 cut(s)	564
Bme18I	GGWCC	1 cut(s)	755
BmgBI	CACGTC	1 cut(s)	596
BmgT120I	GGNCC	1 cut(s)	755
BmiI	GGNNCC	3 cut(s)	561, 636, 757
BmrFI	CCNGG	1 cut(s)	564
BmrI	ACTGGG	1 cut(s)	427
BmsI	GCATC	5 cut(s)	580, 595, 617, 661, 820
BmuI	ACTGGG	1 cut(s)	427
BpuEI	CTTGAG	2 cut(s)	323, 756
Bsa29I	ATCGAT	1 cut(s)	182
BsaJI	CCNNGG	1 cut(s)	169
BsaWI	WCCGGW	1 cut(s)	138
Bse1I	ACTGG	2 cut(s)	422, 448
BseBI	CCWGG	1 cut(s)	564
BseCI	ATCGAT	1 cut(s)	182
BseDI	CCNNGG	1 cut(s)	169
BseGI	GGATG	3 cut(s)	595, 699, 835
BseNI	ACTGG	2 cut(s)	422, 448
BseRI	GAGGAG	3 cut(s)	91, 94, 102
BseXI	GCAGC	1 cut(s)	733
BshFI	GGCC	2 cut(s)	76, 414
BshNI	GGYRCC	2 cut(s)	559, 634
BshVI	ATCGAT	1 cut(s)	182
BsiSI	CCGG	1 cut(s)	139
BslFI	GGGAC	1 cut(s)	741
BsmAI	GTCTC	2 cut(s)	351, 736
BsmFI	GGGAC	1 cut(s)	741
BsmI	GAATGC	2 cut(s)	52, 708
BsnI	GGCC	2 cut(s)	76, 414
Bsp143I	GATC	6 cut(s)	34, 60, 183, 218, 232, 795
BspACI	CCGC	2 cut(s)	163, 187
BspANI	GGCC	2 cut(s)	76, 414
BspDI	ATCGAT	1 cut(s)	182
BspLI	GGNNCC	3 cut(s)	561, 636, 757
BspMAI	CTGCAG	1 cut(s)	751
BspMI	ACCTGC	1 cut(s)	203
BspPI	GGATC	3 cut(s)	55, 178, 213
BspT107I	GGYRCC	2 cut(s)	559, 634
BsrI	ACTGG	2 cut(s)	422, 448
BssECI	CCNNGG	1 cut(s)	169
BssMI	GATC	6 cut(s)	34, 60, 183, 218, 232, 795
Bst2UI	CCWGG	1 cut(s)	564
Bst4CI	ACNGT	2 cut(s)	170, 314
Bst6I	CTCTTC	2 cut(s)	112, 208
BstAPI	GCANNNNNTGC	1 cut(s)	195
BstC8I	GCNNGC	1 cut(s)	78
BstDEI	CTNAG	1 cut(s)	581
BstDSI	CCRYGG	1 cut(s)	169
BstF5I	GGATG	3 cut(s)	595, 699, 835
BstKTI	GATC	6 cut(s)	37, 63, 186, 221, 235, 798
BstMAI	GTCTC	2 cut(s)	351, 736
BstMBI	GATC	6 cut(s)	34, 60, 183, 218, 232, 795
BstMWI	GCNNNNNNNGC	1 cut(s)	195
BstNI	CCWGG	1 cut(s)	564
BstSCI	CCNGG	1 cut(s)	562
BstSFI	CTRYAG	1 cut(s)	747
BstV1I	GCAGC	1 cut(s)	733
BstX2I	RGATCY	1 cut(s)	218
BstYI	RGATCY	1 cut(s)	218
Bsu15I	ATCGAT	1 cut(s)	182
BsuRI	GGCC	2 cut(s)	76, 414
BsuTUI	ATCGAT	1 cut(s)	182
BtgI	CCRYGG	1 cut(s)	169
BtgZI	GCGATG	1 cut(s)	23
BtrI	CACGTC	1 cut(s)	596
BtsCI	GGATG	3 cut(s)	595, 699, 835
BtsIMutI	CAGTG	1 cut(s)	415
BveI	ACCTGC	1 cut(s)	203
Cac8I	GCNNGC	1 cut(s)	78
CaiI	CAGNNNCTG	1 cut(s)	454
Cfr13I	GGNCC	1 cut(s)	755
ClaI	ATCGAT	1 cut(s)	182
CviJI	RGCY	7 cut(s)	14, 76, 80, 260, 414, 770, 806
CviKI_1	RGCY	7 cut(s)	14, 76, 80, 260, 414, 770, 806
DdeI	CTNAG	1 cut(s)	581
DpnI	GATC	6 cut(s)	36, 62, 185, 220, 234, 797
DpnII	GATC	6 cut(s)	34, 60, 183, 218, 232, 795
DraI	TTTAAA	1 cut(s)	666
EaeI	YGGCCR	2 cut(s)	74, 412
Eam1104I	CTCTTC	2 cut(s)	112, 208
EarI	CTCTTC	2 cut(s)	112, 208
Eco47I	GGWCC	1 cut(s)	755
EcoRII	CCWGG	1 cut(s)	562
FaqI	GGGAC	1 cut(s)	741
FauNDI	CATATG	1 cut(s)	844
FblI	GTMKAC	1 cut(s)	719
Fnu4HI	GCNGC	3 cut(s)	15, 163, 747
FokI	GGATG	3 cut(s)	602, 706, 842
Fsp4HI	GCNGC	3 cut(s)	15, 163, 747
GluI	GCNGC	3 cut(s)	15, 163, 747
HaeIII	GGCC	2 cut(s)	76, 414
HapII	CCGG	1 cut(s)	139
HindIII	AAGCTT	1 cut(s)	258
HinfI	GANTC	4 cut(s)	174, 400, 437, 681
HpaII	CCGG	1 cut(s)	139
HphI	GGTGA	2 cut(s)	514, 799
Hpy166II	GTNNAC	2 cut(s)	173, 720
Hpy188I	TCNGA	6 cut(s)	11, 60, 124, 152, 232, 604
Hpy188III	TCNNGA	5 cut(s)	212, 275, 340, 737, 773
Hpy8I	GTNNAC	2 cut(s)	173, 720
Hpy99I	CGWCG	3 cut(s)	32, 134, 137
HpyCH4III	ACNGT	2 cut(s)	170, 314
HpyCH4IV	ACGT	1 cut(s)	595
HpyCH4V	TGCA	6 cut(s)	198, 593, 620, 630, 749, 833
HpyF10VI	GCNNNNNNNGC	1 cut(s)	195
HpyF3I	CTNAG	1 cut(s)	581
HpySE526I	ACGT	1 cut(s)	595
Kzo9I	GATC	6 cut(s)	34, 60, 183, 218, 232, 795
LmnI	GCTCC	1 cut(s)	11
Lsp1109I	GCAGC	1 cut(s)	733
LweI	GCATC	5 cut(s)	580, 595, 617, 661, 820
MaeII	ACGT	1 cut(s)	595
MaeIII	GTNAC	2 cut(s)	350, 572
MalI	GATC	6 cut(s)	36, 62, 185, 220, 234, 797
MboI	GATC	6 cut(s)	34, 60, 183, 218, 232, 795
MboII	GAAGA	8 cut(s)	78, 81, 84, 87, 99, 195, 802, 805
MfeI	CAATTG	1 cut(s)	372
MflI	RGATCY	1 cut(s)	218
MlsI	TGGCCA	1 cut(s)	414
MluCI	AATT	7 cut(s)	20, 226, 372, 428, 507, 760, 800
MluNI	TGGCCA	1 cut(s)	414
MlyI	GAGTC	1 cut(s)	168
MnlI	CCTC	9 cut(s)	109, 112, 115, 123, 130, 219, 275, 347, 808
Mox20I	TGGCCA	1 cut(s)	414
MscI	TGGCCA	1 cut(s)	414
MseI	TTAA	2 cut(s)	225, 665
MslI	CAYNNNNRTG	1 cut(s)	625
Msp20I	TGGCCA	1 cut(s)	414
MspA1I	CMGCKG	1 cut(s)	80
MspI	CCGG	1 cut(s)	139
MspR9I	CCNGG	1 cut(s)	564
MunI	CAATTG	1 cut(s)	372
Mva1269I	GAATGC	2 cut(s)	52, 708
MvaI	CCWGG	1 cut(s)	564
MwoI	GCNNNNNNNGC	1 cut(s)	195
NdeI	CATATG	1 cut(s)	844
NdeII	GATC	6 cut(s)	34, 60, 183, 218, 232, 795
NlaIV	GGNNCC	3 cut(s)	561, 636, 757
NmeAIII	GCCGAG	1 cut(s)	52
NmuCI	GTSAC	2 cut(s)	350, 572
PcsI	WCGNNNNNNNCGW	1 cut(s)	166
PctI	GAATGC	2 cut(s)	52, 708
PfeI	GAWTC	3 cut(s)	400, 437, 681
PkrI	GCNGC	3 cut(s)	16, 164, 748
PleI	GAGTC	1 cut(s)	168
PpsI	GAGTC	1 cut(s)	168
Psp6I	CCWGG	1 cut(s)	562
PspGI	CCWGG	1 cut(s)	562
PspN4I	GGNNCC	3 cut(s)	561, 636, 757
PspPI	GGNCC	1 cut(s)	755
PstI	CTGCAG	1 cut(s)	751
PstNI	CAGNNNCTG	1 cut(s)	454
PsuI	RGATCY	1 cut(s)	218
PvuII	CAGCTG	1 cut(s)	80
RseI	CAYNNNNRTG	1 cut(s)	625
SaqAI	TTAA	2 cut(s)	225, 665
SatI	GCNGC	3 cut(s)	15, 163, 747
Sau3AI	GATC	6 cut(s)	34, 60, 183, 218, 232, 795
Sau96I	GGNCC	1 cut(s)	755
SchI	GAGTC	1 cut(s)	168
ScrFI	CCNGG	1 cut(s)	564
SfaNI	GCATC	5 cut(s)	580, 595, 617, 661, 820
SfcI	CTRYAG	1 cut(s)	747
SinI	GGWCC	1 cut(s)	755
SmiMI	CAYNNNNRTG	1 cut(s)	625
SmlI	CTYRAG	2 cut(s)	338, 771
SmoI	CTYRAG	2 cut(s)	338, 771
Sse9I	AATT	7 cut(s)	20, 226, 372, 428, 507, 760, 800
SsiI	CCGC	2 cut(s)	163, 187
StyD4I	CCNGG	1 cut(s)	562
TaaI	ACNGT	2 cut(s)	170, 314
TaiI	ACGT	1 cut(s)	598
TaqI	TCGA	4 cut(s)	44, 182, 474, 798
TasI	AATT	7 cut(s)	20, 226, 372, 428, 507, 760, 800
TauI	GCSGC	1 cut(s)	165
TfiI	GAWTC	3 cut(s)	400, 437, 681
Tru1I	TTAA	2 cut(s)	225, 665
Tru9I	TTAA	2 cut(s)	225, 665
TscAI	CASTG	1 cut(s)	422
TseFI	GTSAC	2 cut(s)	350, 572
TseI	GCWGC	2 cut(s)	14, 746
Tsp45I	GTSAC	2 cut(s)	350, 572
TspDTI	ATGAA	2 cut(s)	441, 728
TspGWI	ACGGA	2 cut(s)	16, 369
TspRI	CASTG	1 cut(s)	422
VpaK11BI	GGWCC	1 cut(s)	755
XapI	RAATTY	1 cut(s)	428
XmiI	GTMKAC	1 cut(s)	719

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.