Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0007911

Physical Location & Seq

Genomic Coordinates Reverse (-)

10331532 .. 10335485

Gene Structure 3954 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG121600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGATGCTCGGAGCTGCCCAATTCTCCGTCGCCGATCATCGCTCGAATGCGGTTTTTCCGATCCCAAATACTCGGCCAGCTGTTTCTTCCTCCTCTTCTCCTCACACCTCCGATTTCGTCGTCGTTCGGTTAGGTTTCAGACCCAAACGCCGCCACCGTGGACTCAAATCGATCCGCATTACCTGCAACTCTTCCCCTCACGACAGATCCCTTAATTCCGATCATCAAAACTACGAGTATATCCAAGCTTCCCTCTTGCTTTCAGAAACCATATCTCACTACCGTATGCAAAAGAGAGGATTTCAAGAAGAGACGAATTGGAATTCCTCTGGTAAATTGCGGCCATTTTCGGTCCGAGCCACCCGCCCCCGCCCCCGGAATGTTTTGGATACACTCGACAGGAACTTTCTCCACCGTTTCCAAAGTCCTACCATTTTCCTCAAGATTTCGTGTGACGGAGACTTTTTGCTTCCAATTGTTGTAGGCGAACTTGCGGTAGAGAATCTCATAAATAGCCACTGGGGAGATGAATTCGGGGACTCCCCAGACCAGTTTCAGTTTGTGAAAAATCTTGTCGAAAAACTTGACCATCAAGTGAATATGGTGAGAATTACAGAAAGAGTACTGAATACTTACTTTGCCAGATTGTATTTTAGCAAGGCAAAAGTGACATTCTTAGTGTGGATGCACGTCCATCAGATGCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNase-RNase UVR

Protein Analysis

235

Amino Acids

27.18

Weight (kDa)

9.88

Isoelectric Point (pI)

43.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BFN_dom	PF02577	153 - 221	7.7e-06	Bifunctional nuclease domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007911)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66050 AT5G66050 AT5G66050 AT5G66050
fragaria_vesca	FvH4_1g10980 FvH4_1g10980 FvH4_1g10980 FvH4_1g10980
malus_domestica	MD02G1122800.v1.1 MD15G1236800.v1.1
prunus_persica	Prupe.7G175700_v2.0.a1
pyrus_communis	pycom02g09580 pycom15g21060
rosa_chinensis	RchiOBHm_Chr2g0098241
rosa_laevigata	RLG00000016778
rosa_multiflora	Rmu_co8414957.1_g000001 Rmu_sc0009178.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144130
rosa_rugosa	Rorug02G0071400 Rorug02G0071500
rosa_samantha	Rh2AG118500 Rh2BG121600 Rh2CG123200
rosa_wichuraiana	Rw2G009300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	191
AciI	CCGC	7 cut(s)	50, 151, 175, 340, 364, 370, 494
AclWI	GGATC	3 cut(s)	55, 166, 201
AcoI	YGGCCR	2 cut(s)	74, 341
AcsI	RAATTY	2 cut(s)	322, 530
AfaI	GTAC	1 cut(s)	624
AfiI	CCNNNNNNNGG	1 cut(s)	375
AgsI	TTSAA	1 cut(s)	305
AjiI	CACGTC	1 cut(s)	691
AluBI	AGCT	3 cut(s)	14, 80, 248
AluI	AGCT	3 cut(s)	14, 80, 248
Alw26I	GTCTC	2 cut(s)	305, 453
AlwI	GGATC	3 cut(s)	55, 166, 201
AoxI	GGCC	2 cut(s)	74, 341
ApeKI	GCWGC	1 cut(s)	14
ApoI	RAATTY	2 cut(s)	322, 530
AspS9I	GGNCC	1 cut(s)	352
AsuC2I	CCSGG	1 cut(s)	376
AsuHPI	GGTGA	1 cut(s)	616
AvaII	GGWCC	1 cut(s)	352
BccI	CCATC	2 cut(s)	597, 702
BciVI	GTATCC	1 cut(s)	382
BcnI	CCSGG	1 cut(s)	376
BcoDI	GTCTC	2 cut(s)	305, 453
BfuAI	ACCTGC	1 cut(s)	191
BfuI	GTATCC	1 cut(s)	382
BisI	GCNGC	3 cut(s)	15, 151, 341
BlsI	GCNGC	3 cut(s)	16, 152, 342
BmcAI	AGTACT	1 cut(s)	624
Bme1390I	CCNGG	1 cut(s)	376
Bme18I	GGWCC	1 cut(s)	352
BmgBI	CACGTC	1 cut(s)	691
BmgT120I	GGNCC	1 cut(s)	352
BmrFI	CCNGG	1 cut(s)	376
BmrI	ACTGGG	1 cut(s)	529
BmsI	GCATC	2 cut(s)	675, 690
BmuI	ACTGGG	1 cut(s)	529
BpuEI	CTTGAG	1 cut(s)	425
BpuMI	CCSGG	1 cut(s)	376
Bsa29I	ATCGAT	1 cut(s)	170
BsaJI	CCNNGG	2 cut(s)	157, 374
Bsc4I	CCNNNNNNNGG	1 cut(s)	375
Bse1I	ACTGG	2 cut(s)	524, 550
BseCI	ATCGAT	1 cut(s)	170
BseDI	CCNNGG	2 cut(s)	157, 374
BseGI	GGATG	1 cut(s)	690
BseLI	CCNNNNNNNGG	1 cut(s)	375
BseNI	ACTGG	2 cut(s)	524, 550
BseRI	GAGGAG	2 cut(s)	82, 90
BshFI	GGCC	2 cut(s)	76, 343
BshVI	ATCGAT	1 cut(s)	170
BsiSI	CCGG	1 cut(s)	376
BslFI	GGGAC	1 cut(s)	551
BslI	CCNNNNNNNGG	1 cut(s)	375
BsmAI	GTCTC	2 cut(s)	305, 453
BsmBI	CGTCTC	1 cut(s)	305
BsmFI	GGGAC	1 cut(s)	551
BsmI	GAATGC	1 cut(s)	52
BsnI	GGCC	2 cut(s)	76, 343
Bsp143I	GATC	5 cut(s)	34, 60, 171, 206, 220
BspACI	CCGC	7 cut(s)	50, 151, 175, 340, 364, 370, 494
BspANI	GGCC	2 cut(s)	76, 343
BspDI	ATCGAT	1 cut(s)	170
BspMI	ACCTGC	1 cut(s)	191
BspPI	GGATC	3 cut(s)	55, 166, 201
BsrI	ACTGG	2 cut(s)	524, 550
BssECI	CCNNGG	2 cut(s)	157, 374
BssMI	GATC	5 cut(s)	34, 60, 171, 206, 220
Bst4CI	ACNGT	3 cut(s)	158, 284, 416
Bst6I	CTCTTC	3 cut(s)	100, 196, 303
BstAPI	GCANNNNNTGC	1 cut(s)	183
BstC8I	GCNNGC	1 cut(s)	78
BstDEI	CTNAG	1 cut(s)	676
BstDSI	CCRYGG	1 cut(s)	157
BstF5I	GGATG	1 cut(s)	690
BstKTI	GATC	5 cut(s)	37, 63, 174, 209, 223
BstMAI	GTCTC	2 cut(s)	305, 453
BstMBI	GATC	5 cut(s)	34, 60, 171, 206, 220
BstMWI	GCNNNNNNNGC	1 cut(s)	183
BstSCI	CCNGG	1 cut(s)	374
BstX2I	RGATCY	1 cut(s)	206
BstYI	RGATCY	1 cut(s)	206
Bsu15I	ATCGAT	1 cut(s)	170
BsuI	GTATCC	1 cut(s)	382
BsuRI	GGCC	2 cut(s)	76, 343
BsuTUI	ATCGAT	1 cut(s)	170
BtgI	CCRYGG	1 cut(s)	157
BtgZI	GCGATG	1 cut(s)	23
BtrI	CACGTC	1 cut(s)	691
BtsCI	GGATG	1 cut(s)	690
BtsIMutI	CAGTG	1 cut(s)	517
BveI	ACCTGC	1 cut(s)	191
Cac8I	GCNNGC	1 cut(s)	78
Cfr13I	GGNCC	1 cut(s)	352
ClaI	ATCGAT	1 cut(s)	170
CpoI	CGGWCCG	1 cut(s)	352
Csp6I	GTAC	1 cut(s)	623
CspI	CGGWCCG	1 cut(s)	352
CviJI	RGCY	7 cut(s)	14, 76, 80, 248, 343, 359, 516
CviKI_1	RGCY	7 cut(s)	14, 76, 80, 248, 343, 359, 516
CviQI	GTAC	1 cut(s)	623
DdeI	CTNAG	1 cut(s)	676
DpnI	GATC	5 cut(s)	36, 62, 173, 208, 222
DpnII	GATC	5 cut(s)	34, 60, 171, 206, 220
EaeI	YGGCCR	2 cut(s)	74, 341
Eam1104I	CTCTTC	3 cut(s)	100, 196, 303
EarI	CTCTTC	3 cut(s)	100, 196, 303
Eco47I	GGWCC	1 cut(s)	352
EcoRI	GAATTC	2 cut(s)	322, 530
Esp3I	CGTCTC	1 cut(s)	305
FaiI	YATR	6 cut(s)	240, 272, 287, 509, 602, 706
FaqI	GGGAC	1 cut(s)	551
FauI	CCCGC	2 cut(s)	371, 377
Fnu4HI	GCNGC	3 cut(s)	15, 151, 341
FokI	GGATG	1 cut(s)	697
Fsp4HI	GCNGC	3 cut(s)	15, 151, 341
GluI	GCNGC	3 cut(s)	15, 151, 341
HaeIII	GGCC	2 cut(s)	76, 343
HapII	CCGG	1 cut(s)	376
HindIII	AAGCTT	1 cut(s)	246
HinfI	GANTC	3 cut(s)	162, 502, 539
HpaII	CCGG	1 cut(s)	376
HphI	GGTGA	1 cut(s)	616
Hpy166II	GTNNAC	1 cut(s)	161
Hpy188I	TCNGA	8 cut(s)	11, 60, 112, 140, 220, 265, 356, 699
Hpy188III	TCNNGA	3 cut(s)	200, 305, 442
Hpy8I	GTNNAC	1 cut(s)	161
Hpy99I	CGWCG	3 cut(s)	32, 122, 125
HpyCH4III	ACNGT	3 cut(s)	158, 284, 416
HpyCH4IV	ACGT	1 cut(s)	690
HpyCH4V	TGCA	3 cut(s)	186, 289, 688
HpyF10VI	GCNNNNNNNGC	1 cut(s)	183
HpyF3I	CTNAG	1 cut(s)	676
HpySE526I	ACGT	1 cut(s)	690
Kzo9I	GATC	5 cut(s)	34, 60, 171, 206, 220
LmnI	GCTCC	1 cut(s)	11
LpnPI	CCDG	9 cut(s)	90, 196, 315, 385, 389, 505, 558, 563, 655
LweI	GCATC	2 cut(s)	675, 690
MaeII	ACGT	1 cut(s)	690
MaeIII	GTNAC	2 cut(s)	452, 667
MalI	GATC	5 cut(s)	36, 62, 173, 208, 222
MboI	GATC	5 cut(s)	34, 60, 171, 206, 220
MboII	GAAGA	4 cut(s)	78, 87, 183, 320
MfeI	CAATTG	1 cut(s)	474
MflI	RGATCY	1 cut(s)	206
MluCI	AATT	8 cut(s)	20, 214, 316, 322, 335, 474, 530, 609
MlyI	GAGTC	2 cut(s)	156, 533
MnlI	CCTC	9 cut(s)	100, 103, 111, 118, 207, 263, 290, 337, 449
MseI	TTAA	1 cut(s)	213
MspA1I	CMGCKG	1 cut(s)	80
MspI	CCGG	1 cut(s)	376
MspR9I	CCNGG	1 cut(s)	376
MunI	CAATTG	1 cut(s)	474
Mva1269I	GAATGC	1 cut(s)	52
MwoI	GCNNNNNNNGC	1 cut(s)	183
NciI	CCSGG	1 cut(s)	376
NdeII	GATC	5 cut(s)	34, 60, 171, 206, 220
NmeAIII	GCCGAG	1 cut(s)	52
NmuCI	GTSAC	2 cut(s)	452, 667
PcsI	WCGNNNNNNNCGW	1 cut(s)	154
PctI	GAATGC	1 cut(s)	52
PfeI	GAWTC	1 cut(s)	502
PkrI	GCNGC	3 cut(s)	16, 152, 342
PleI	GAGTC	2 cut(s)	156, 533
PpsI	GAGTC	2 cut(s)	156, 533
PspPI	GGNCC	1 cut(s)	352
PsuI	RGATCY	1 cut(s)	206
PvuII	CAGCTG	1 cut(s)	80
RsaI	GTAC	1 cut(s)	624
RsaNI	GTAC	1 cut(s)	623
Rsr2I	CGGWCCG	1 cut(s)	352
RsrII	CGGWCCG	1 cut(s)	352
SaqAI	TTAA	1 cut(s)	213
SatI	GCNGC	3 cut(s)	15, 151, 341
Sau3AI	GATC	5 cut(s)	34, 60, 171, 206, 220
Sau96I	GGNCC	1 cut(s)	352
ScaI	AGTACT	1 cut(s)	624
SchI	GAGTC	2 cut(s)	156, 533
ScrFI	CCNGG	1 cut(s)	376
SetI	ASST	7 cut(s)	16, 82, 110, 136, 185, 250, 693
SfaNI	GCATC	2 cut(s)	675, 690
SinI	GGWCC	1 cut(s)	352
SmlI	CTYRAG	1 cut(s)	440
SmoI	CTYRAG	1 cut(s)	440
Sse9I	AATT	8 cut(s)	20, 214, 316, 322, 335, 474, 530, 609
SsiI	CCGC	7 cut(s)	50, 151, 175, 340, 364, 370, 494
StyD4I	CCNGG	1 cut(s)	374
TaaI	ACNGT	3 cut(s)	158, 284, 416
TaiI	ACGT	1 cut(s)	693
TaqI	TCGA	4 cut(s)	44, 170, 396, 576
TaqII	GACCGA	1 cut(s)	340
TasI	AATT	8 cut(s)	20, 214, 316, 322, 335, 474, 530, 609
TatI	WGTACW	1 cut(s)	622
TauI	GCSGC	2 cut(s)	153, 343
TfiI	GAWTC	1 cut(s)	502
Tru1I	TTAA	1 cut(s)	213
Tru9I	TTAA	1 cut(s)	213
TscAI	CASTG	1 cut(s)	524
TseFI	GTSAC	2 cut(s)	452, 667
TseI	GCWGC	1 cut(s)	14
Tsp45I	GTSAC	2 cut(s)	452, 667
TspDTI	ATGAA	1 cut(s)	543
TspGWI	ACGGA	2 cut(s)	16, 471
TspRI	CASTG	1 cut(s)	524
VpaK11BI	GGWCC	1 cut(s)	352
XapI	RAATTY	2 cut(s)	322, 530
ZrmI	AGTACT	1 cut(s)	624

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.