Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0007911

Physical Location & Seq

Genomic Coordinates Reverse (-)

10681543 .. 10684432

Gene Structure 2890 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG118500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGCTCGGAGCTGCCCAATTCTCGGTCGCCGATCATCGCTCGAATGCCGTTTTTCCGATCCCAAATACTCGGCCAGCTGTTTCTTCTTCCTCTTCTCCTCTCACCTCCTCCGATTTCGTCGTCGTTCGGTTAGGTTTCAGACCCAAACGCCGCCACCGTGGACTCAAATCGATCCGCATTACCTGCAACTCTTCCCCTGACGACAGATCCCTTAATTCCGATCATCAAAACTACGAGTACATCCAAGCTTCCCTCTTGGTTTCAGAAACTATATCTCACTACCGTATGCAAAAGAGAGGATTTCAACAAGAGACGAATTGGAATTCCTCTGATAAATTGCGGCCATTTTCGGTCCGAGCCGCCCGCCCCCGGAATGTTTTGGATACACTAGACAGCAACTTTCTCCACCGTTTCCAAACTCCTACCATTTTCCTCAAGATTTCGTGTGACGGAGACTTTTTGCTTCCTATTGTTGTAGGCCAACTGGCGATAGAGAATCTCATAAATGGCAACTGGGGAGATGAATTTGGGGATTCCCCAGACCAGTTTCAGTTTGTGAAAAATCTTGTCGAAAAACTTGACCATCAAGTATGGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNase-RNase UVR

Protein Analysis

199

Amino Acids

22.62

Weight (kDa)

9.03

Isoelectric Point (pI)

40.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007911)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66050 AT5G66050 AT5G66050 AT5G66050
fragaria_vesca	FvH4_1g10980 FvH4_1g10980 FvH4_1g10980 FvH4_1g10980
malus_domestica	MD02G1122800.v1.1 MD15G1236800.v1.1
prunus_persica	Prupe.7G175700_v2.0.a1
pyrus_communis	pycom02g09580 pycom15g21060
rosa_chinensis	RchiOBHm_Chr2g0098241
rosa_laevigata	RLG00000016778
rosa_multiflora	Rmu_co8414957.1_g000001 Rmu_sc0009178.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144130
rosa_rugosa	Rorug02G0071400 Rorug02G0071500
rosa_samantha	Rh2AG118500 Rh2BG121600 Rh2CG123200
rosa_wichuraiana	Rw2G009300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	191
AciI	CCGC	5 cut(s)	151, 175, 340, 360, 364
AclWI	GGATC	3 cut(s)	52, 166, 201
AcoI	YGGCCR	2 cut(s)	71, 341
AcsI	RAATTY	2 cut(s)	322, 524
AfaI	GTAC	1 cut(s)	239
AfiI	CCNNNNNNNGG	2 cut(s)	22, 369
AgsI	TTSAA	1 cut(s)	305
AluBI	AGCT	4 cut(s)	11, 77, 248, 597
AluI	AGCT	4 cut(s)	11, 77, 248, 597
Alw26I	GTCTC	2 cut(s)	305, 447
AlwI	GGATC	3 cut(s)	52, 166, 201
AoxI	GGCC	3 cut(s)	71, 341, 478
ApeKI	GCWGC	1 cut(s)	11
ApoI	RAATTY	2 cut(s)	322, 524
AspS9I	GGNCC	1 cut(s)	352
AsuC2I	CCSGG	1 cut(s)	370
AsuHPI	GGTGA	1 cut(s)	94
AvaII	GGWCC	1 cut(s)	352
BccI	CCATC	1 cut(s)	591
BceAI	ACGGC	1 cut(s)	32
BciVI	GTATCC	1 cut(s)	376
BcnI	CCSGG	1 cut(s)	370
BcoDI	GTCTC	2 cut(s)	305, 447
BfaI	CTAG	1 cut(s)	389
BfuAI	ACCTGC	1 cut(s)	191
BfuI	GTATCC	1 cut(s)	376
BisI	GCNGC	4 cut(s)	12, 151, 341, 360
BlsI	GCNGC	4 cut(s)	13, 152, 342, 361
Bme1390I	CCNGG	1 cut(s)	370
Bme18I	GGWCC	1 cut(s)	352
BmgT120I	GGNCC	1 cut(s)	352
BmrFI	CCNGG	1 cut(s)	370
BmrI	ACTGGG	1 cut(s)	523
BmuI	ACTGGG	1 cut(s)	523
BpuEI	CTTGAG	1 cut(s)	419
BpuMI	CCSGG	1 cut(s)	370
Bsa29I	ATCGAT	1 cut(s)	170
BsaJI	CCNNGG	2 cut(s)	157, 368
Bsc4I	CCNNNNNNNGG	2 cut(s)	22, 369
Bse1I	ACTGG	3 cut(s)	489, 518, 544
BseCI	ATCGAT	1 cut(s)	170
BseDI	CCNNGG	2 cut(s)	157, 368
BseGI	GGATG	1 cut(s)	240
BseLI	CCNNNNNNNGG	2 cut(s)	22, 369
BseNI	ACTGG	3 cut(s)	489, 518, 544
BseRI	GAGGAG	2 cut(s)	87, 97
Bsh1285I	CGRYCG	1 cut(s)	27
BshFI	GGCC	3 cut(s)	73, 343, 480
BshVI	ATCGAT	1 cut(s)	170
BsiEI	CGRYCG	1 cut(s)	27
BsiSI	CCGG	1 cut(s)	370
BslI	CCNNNNNNNGG	2 cut(s)	22, 369
BsmAI	GTCTC	2 cut(s)	305, 447
BsmBI	CGTCTC	1 cut(s)	305
BsmI	GAATGC	1 cut(s)	49
BsnI	GGCC	3 cut(s)	73, 343, 480
Bsp143I	GATC	5 cut(s)	31, 57, 171, 206, 220
BspACI	CCGC	5 cut(s)	151, 175, 340, 360, 364
BspANI	GGCC	3 cut(s)	73, 343, 480
BspDI	ATCGAT	1 cut(s)	170
BspMI	ACCTGC	1 cut(s)	191
BspPI	GGATC	3 cut(s)	52, 166, 201
BsrI	ACTGG	3 cut(s)	489, 518, 544
BssECI	CCNNGG	2 cut(s)	157, 368
BssMI	GATC	5 cut(s)	31, 57, 171, 206, 220
Bst4CI	ACNGT	3 cut(s)	158, 284, 410
Bst6I	CTCTTC	2 cut(s)	97, 196
BstAPI	GCANNNNNTGC	1 cut(s)	183
BstC8I	GCNNGC	2 cut(s)	75, 364
BstDSI	CCRYGG	1 cut(s)	157
BstF5I	GGATG	1 cut(s)	240
BstKTI	GATC	5 cut(s)	34, 60, 174, 209, 223
BstMAI	GTCTC	2 cut(s)	305, 447
BstMBI	GATC	5 cut(s)	31, 57, 171, 206, 220
BstMCI	CGRYCG	1 cut(s)	27
BstMWI	GCNNNNNNNGC	1 cut(s)	183
BstSCI	CCNGG	1 cut(s)	368
BstX2I	RGATCY	1 cut(s)	206
BstYI	RGATCY	1 cut(s)	206
Bsu15I	ATCGAT	1 cut(s)	170
BsuI	GTATCC	1 cut(s)	376
BsuRI	GGCC	3 cut(s)	73, 343, 480
BsuTUI	ATCGAT	1 cut(s)	170
BtgI	CCRYGG	1 cut(s)	157
BtgZI	GCGATG	1 cut(s)	20
BtsCI	GGATG	1 cut(s)	240
BveI	ACCTGC	1 cut(s)	191
Cac8I	GCNNGC	2 cut(s)	75, 364
Cfr13I	GGNCC	1 cut(s)	352
ClaI	ATCGAT	1 cut(s)	170
CpoI	CGGWCCG	1 cut(s)	352
Csp6I	GTAC	1 cut(s)	238
CspI	CGGWCCG	1 cut(s)	352
CviJI	RGCY	8 cut(s)	11, 73, 77, 248, 343, 359, 480, 597
CviKI_1	RGCY	8 cut(s)	11, 73, 77, 248, 343, 359, 480, 597
CviQI	GTAC	1 cut(s)	238
DpnI	GATC	5 cut(s)	33, 59, 173, 208, 222
DpnII	GATC	5 cut(s)	31, 57, 171, 206, 220
EaeI	YGGCCR	2 cut(s)	71, 341
Eam1104I	CTCTTC	2 cut(s)	97, 196
EarI	CTCTTC	2 cut(s)	97, 196
Eco47I	GGWCC	1 cut(s)	352
EcoRI	GAATTC	1 cut(s)	322
Esp3I	CGTCTC	1 cut(s)	305
FaiI	YATR	4 cut(s)	272, 287, 503, 592
FauI	CCCGC	1 cut(s)	371
Fnu4HI	GCNGC	4 cut(s)	12, 151, 341, 360
FokI	GGATG	1 cut(s)	227
Fsp4HI	GCNGC	4 cut(s)	12, 151, 341, 360
FspBI	CTAG	1 cut(s)	389
GluI	GCNGC	4 cut(s)	12, 151, 341, 360
HaeIII	GGCC	3 cut(s)	73, 343, 480
HapII	CCGG	1 cut(s)	370
HindIII	AAGCTT	1 cut(s)	246
HinfI	GANTC	3 cut(s)	162, 496, 533
HpaII	CCGG	1 cut(s)	370
HphI	GGTGA	1 cut(s)	94
Hpy166II	GTNNAC	1 cut(s)	161
Hpy188I	TCNGA	8 cut(s)	8, 57, 112, 140, 220, 265, 331, 356
Hpy188III	TCNNGA	1 cut(s)	436
Hpy8I	GTNNAC	1 cut(s)	161
Hpy99I	CGWCG	2 cut(s)	122, 125
HpyCH4III	ACNGT	3 cut(s)	158, 284, 410
HpyCH4V	TGCA	2 cut(s)	186, 289
HpyF10VI	GCNNNNNNNGC	1 cut(s)	183
Kzo9I	GATC	5 cut(s)	31, 57, 171, 206, 220
LmnI	GCTCC	2 cut(s)	8, 594
LpnPI	CCDG	8 cut(s)	87, 196, 210, 383, 470, 499, 552, 557
MaeI	CTAG	1 cut(s)	389
MaeIII	GTNAC	1 cut(s)	446
MalI	GATC	5 cut(s)	33, 59, 173, 208, 222
MboI	GATC	5 cut(s)	31, 57, 171, 206, 220
MboII	GAAGA	4 cut(s)	75, 78, 84, 183
MflI	RGATCY	1 cut(s)	206
MluCI	AATT	6 cut(s)	17, 214, 316, 322, 335, 524
MlyI	GAGTC	1 cut(s)	156
MnlI	CCTC	8 cut(s)	100, 108, 115, 118, 263, 290, 337, 443
MseI	TTAA	1 cut(s)	213
MspA1I	CMGCKG	1 cut(s)	77
MspI	CCGG	1 cut(s)	370
MspR9I	CCNGG	1 cut(s)	370
Mva1269I	GAATGC	1 cut(s)	49
MwoI	GCNNNNNNNGC	1 cut(s)	183
NciI	CCSGG	1 cut(s)	370
NdeII	GATC	5 cut(s)	31, 57, 171, 206, 220
NmeAIII	GCCGAG	1 cut(s)	49
NmuCI	GTSAC	1 cut(s)	446
PcsI	WCGNNNNNNNCGW	1 cut(s)	154
PctI	GAATGC	1 cut(s)	49
PfeI	GAWTC	2 cut(s)	496, 533
PkrI	GCNGC	4 cut(s)	13, 152, 342, 361
PleI	GAGTC	1 cut(s)	156
PpsI	GAGTC	1 cut(s)	156
PspPI	GGNCC	1 cut(s)	352
PsuI	RGATCY	1 cut(s)	206
PvuII	CAGCTG	1 cut(s)	77
RsaI	GTAC	1 cut(s)	239
RsaNI	GTAC	1 cut(s)	238
Rsr2I	CGGWCCG	1 cut(s)	352
RsrII	CGGWCCG	1 cut(s)	352
SaqAI	TTAA	1 cut(s)	213
SatI	GCNGC	4 cut(s)	12, 151, 341, 360
Sau3AI	GATC	5 cut(s)	31, 57, 171, 206, 220
Sau96I	GGNCC	1 cut(s)	352
SchI	GAGTC	1 cut(s)	156
ScrFI	CCNGG	1 cut(s)	370
SetI	ASST	7 cut(s)	13, 79, 107, 136, 185, 250, 599
SinI	GGWCC	1 cut(s)	352
SmlI	CTYRAG	1 cut(s)	434
SmoI	CTYRAG	1 cut(s)	434
Sse9I	AATT	6 cut(s)	17, 214, 316, 322, 335, 524
SsiI	CCGC	5 cut(s)	151, 175, 340, 360, 364
SspMI	CTAG	1 cut(s)	389
StyD4I	CCNGG	1 cut(s)	368
TaaI	ACNGT	3 cut(s)	158, 284, 410
TaqI	TCGA	3 cut(s)	41, 170, 570
TaqII	GACCGA	2 cut(s)	13, 340
TasI	AATT	6 cut(s)	17, 214, 316, 322, 335, 524
TatI	WGTACW	1 cut(s)	237
TauI	GCSGC	3 cut(s)	153, 343, 362
TfiI	GAWTC	2 cut(s)	496, 533
Tru1I	TTAA	1 cut(s)	213
Tru9I	TTAA	1 cut(s)	213
TseFI	GTSAC	1 cut(s)	446
TseI	GCWGC	1 cut(s)	11
Tsp45I	GTSAC	1 cut(s)	446
TspDTI	ATGAA	1 cut(s)	537
TspGWI	ACGGA	1 cut(s)	465
VpaK11BI	GGWCC	1 cut(s)	352
XapI	RAATTY	2 cut(s)	322, 524
XspI	CTAG	1 cut(s)	389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.