Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0008160

Physical Location & Seq

Genomic Coordinates Forward (+)

20016540 .. 20017336

Gene Structure 797 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g21820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGTTCAAGATGATAGACACTGACAACAGTGGTCAAATCACTTTTGACGAACTCAAGGCCGGATTGAAAAGATTTGGAGCAACTCTGGAGGAGTCTGAAATTTATGATCTAATGCAAGCAGCAGATGTTGATAACAGTGGAACCATTGATTATGGGGAGTTCGTAGCTGCAACATTGCATCTGAACAAAATTGAGAGAGAAGATCGATCTAATGAGATTTTCAGCTTTCTCCTACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0012505 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0031984 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042175 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0097305 GO:0097306 GO:0098827 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 Pkinase

Protein Analysis

80

Amino Acids

8.95

Weight (kDa)

4.27

Isoelectric Point (pI)

38.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_1	PF00036	1 - 24	4.3e-08	EF hand domain
EF-hand_6	PF13405	1 - 26	4e-07	EF-hand domain
EF-hand_7	PF13499	1 - 58	8e-13	EF-hand domain pair
EF-hand_5	PF13202	1 - 20	5.4e-06	EF hand
EF-hand_8	PF13833	10 - 58	3.7e-09	EF-hand domain pair
EF-hand_1	PF00036	33 - 57	8.5e-06	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0008160)

Species	Orthologous Gene IDs
malus_domestica	MD07G1063200.v1.1
pyrus_communis	pycom02g21820 pycom02g21840
rosa_chinensis	RchiOBHm_Chr3g0470181
rosa_laevigata	RLG00000008106 RLG00000029152 RLG00000031580 RLG00000034936
rosa_multiflora	Rmu_co8301435.1_g000001 Rmu_co8456623.1_g000001 Rmu_sc0002799.1_g000014 Rmu_sc0014039.1_g000005
rosa_roxburghii	Rroxscaffold_3G00272930
rosa_rugosa	Rorug02G0162400 Rorug04G0088700
rosa_samantha	Rh1AG124000 Rh2BG466300 Rh3BG244000 Rh3CG171600 Rh4AG140600 Rh5BG342900 Rh5CG369900 Rh6AG182300 Rh7BG390200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	99
AgsI	TTSAA	2 cut(s)	7, 67
AluBI	AGCT	2 cut(s)	167, 225
AluI	AGCT	2 cut(s)	167, 225
AoxI	GGCC	1 cut(s)	57
ApeKI	GCWGC	2 cut(s)	119, 167
ApoI	RAATTY	1 cut(s)	99
BbvI	GCAGC	2 cut(s)	131, 154
BisI	GCNGC	2 cut(s)	120, 168
BlsI	GCNGC	2 cut(s)	121, 169
BmiI	GGNNCC	1 cut(s)	142
BmsI	GCATC	1 cut(s)	187
BpmI	CTGGAG	1 cut(s)	107
BpuEI	CTTGAG	1 cut(s)	38
Bsa29I	ATCGAT	1 cut(s)	205
Bse3DI	GCAATG	1 cut(s)	173
BseCI	ATCGAT	1 cut(s)	205
BseMI	GCAATG	1 cut(s)	173
BseRI	GAGGAG	1 cut(s)	104
BseXI	GCAGC	2 cut(s)	131, 154
BshFI	GGCC	1 cut(s)	59
BshVI	ATCGAT	1 cut(s)	205
BsiSI	CCGG	1 cut(s)	60
BsnI	GGCC	1 cut(s)	59
Bsp143I	GATC	3 cut(s)	106, 202, 206
BspANI	GGCC	1 cut(s)	59
BspDI	ATCGAT	1 cut(s)	205
BspLI	GGNNCC	1 cut(s)	142
BsrDI	GCAATG	1 cut(s)	173
BssMI	GATC	3 cut(s)	106, 202, 206
Bst4CI	ACNGT	2 cut(s)	29, 137
BstC8I	GCNNGC	1 cut(s)	117
BstKTI	GATC	3 cut(s)	109, 205, 209
BstMBI	GATC	3 cut(s)	106, 202, 206
BstV1I	GCAGC	2 cut(s)	131, 154
Bsu15I	ATCGAT	1 cut(s)	205
BsuRI	GGCC	1 cut(s)	59
BsuTUI	ATCGAT	1 cut(s)	205
BtsIMutI	CAGTG	3 cut(s)	18, 34, 142
Cac8I	GCNNGC	1 cut(s)	117
ClaI	ATCGAT	1 cut(s)	205
CviJI	RGCY	3 cut(s)	59, 167, 225
CviKI_1	RGCY	3 cut(s)	59, 167, 225
DpnI	GATC	3 cut(s)	108, 204, 208
DpnII	GATC	3 cut(s)	106, 202, 206
FaiI	YATR	2 cut(s)	105, 153
Fnu4HI	GCNGC	2 cut(s)	120, 168
Fsp4HI	GCNGC	2 cut(s)	120, 168
GluI	GCNGC	2 cut(s)	120, 168
GsuI	CTGGAG	1 cut(s)	107
HaeIII	GGCC	1 cut(s)	59
HapII	CCGG	1 cut(s)	60
HinfI	GANTC	1 cut(s)	92
HpaII	CCGG	1 cut(s)	60
Hpy188I	TCNGA	2 cut(s)	97, 183
Hpy188III	TCNNGA	2 cut(s)	7, 86
HpyCH4III	ACNGT	2 cut(s)	29, 137
HpyCH4V	TGCA	3 cut(s)	115, 170, 178
Kzo9I	GATC	3 cut(s)	106, 202, 206
LmnI	GCTCC	1 cut(s)	77
LpnPI	CCDG	2 cut(s)	71, 73
Lsp1109I	GCAGC	2 cut(s)	131, 154
LweI	GCATC	1 cut(s)	187
MalI	GATC	3 cut(s)	108, 204, 208
MboI	GATC	3 cut(s)	106, 202, 206
MboII	GAAGA	1 cut(s)	212
MluCI	AATT	2 cut(s)	99, 189
MlyI	GAGTC	1 cut(s)	101
MnlI	CCTC	1 cut(s)	82
MspI	CCGG	1 cut(s)	60
NdeII	GATC	3 cut(s)	106, 202, 206
NlaIV	GGNNCC	1 cut(s)	142
PkrI	GCNGC	2 cut(s)	121, 169
PleI	GAGTC	1 cut(s)	100
PpsI	GAGTC	1 cut(s)	100
PspN4I	GGNNCC	1 cut(s)	142
SatI	GCNGC	2 cut(s)	120, 168
Sau3AI	GATC	3 cut(s)	106, 202, 206
SchI	GAGTC	1 cut(s)	101
SetI	ASST	2 cut(s)	169, 227
SfaNI	GCATC	1 cut(s)	187
SgeI	CNNG	5 cut(s)	19, 67, 72, 98, 128
SmlI	CTYRAG	1 cut(s)	53
SmoI	CTYRAG	1 cut(s)	53
Sse9I	AATT	2 cut(s)	99, 189
TaaI	ACNGT	2 cut(s)	29, 137
TaqI	TCGA	1 cut(s)	205
TasI	AATT	2 cut(s)	99, 189
TscAI	CASTG	3 cut(s)	25, 34, 142
TseI	GCWGC	2 cut(s)	119, 167
TspRI	CASTG	3 cut(s)	25, 34, 142
XapI	RAATTY	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.