Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0008160

Physical Location & Seq

Genomic Coordinates Forward (+)

33759338 .. 33761149

Gene Structure 1812 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029152

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGCTGCAAGAATTGCAGAACACTTTTGTTAACGAAGTAGAAGTAATCAGGGACATGTTCACATTGATGGACGCTGATAAAGATGGCAAAGTAACTTATGAGGAATTGAAGACTGGTCTTCAAAAGGTTGGTTTGCAGTTGGCTGAACCTGAGGCTGTTGTTGATGGGAATGGATTTCTGGATTATGCAGAGTTCGCAGCAGTTACAATTCACTTGCAAAAATTGGAGAATGATGAACATCTCTGGAGAGCATTTATATTCTACGACAAGGATGGAAGTGAGTATATTGATTTAGTTGAGCTAAGGCAAGCATTGGTAGATATGCCACTTTCAACCCACCTCTTCTCTTTGATGGCACTCTCAGAGTCGTTATCTCAGAAGTGGAAAGAGCTGATGGGGAAGGCTTGCTCAAAGCAACTTCAGCCCCATGAGTACAGCTCAGAAGCCCAAGGCCGCAGAGAGAACAATCAGCCCATCCTCCTCGACCCAAATCAGCAACCGCACCACCATCACCACGCCGTCACCAAACCCGCTGCACCACCACCCGTGTCGGAGCCAGGCTCTTCGATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009555 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010152 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0021700 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048229 GO:0048518 GO:0048583 GO:0048584 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0080134 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701 GO:1902584 GO:2000070

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7 Pkinase

Protein Analysis

191

Amino Acids

21.52

Weight (kDa)

4.94

Isoelectric Point (pI)

50.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_1	PF00036	16 - 42	1.2e-07	EF hand domain
EF-hand_6	PF13405	16 - 44	8.3e-06	EF-hand domain
EF-hand_5	PF13202	16 - 38	3.7e-06	EF hand

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008160)

Species	Orthologous Gene IDs
malus_domestica	MD07G1063200.v1.1
pyrus_communis	pycom02g21820 pycom02g21840
rosa_chinensis	RchiOBHm_Chr3g0470181
rosa_laevigata	RLG00000008106 RLG00000029152 RLG00000031580 RLG00000034936
rosa_multiflora	Rmu_co8301435.1_g000001 Rmu_co8456623.1_g000001 Rmu_sc0002799.1_g000014 Rmu_sc0014039.1_g000005
rosa_roxburghii	Rroxscaffold_3G00272930
rosa_rugosa	Rorug02G0162400 Rorug04G0088700
rosa_samantha	Rh1AG124000 Rh2BG466300 Rh3BG244000 Rh3CG171600 Rh4AG140600 Rh5BG342900 Rh5CG369900 Rh6AG182300 Rh7BG390200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	454, 500, 531
AcuI	CTGAAG	1 cut(s)	404
AfaI	GTAC	1 cut(s)	434
AflIII	ACRYGT	1 cut(s)	54
AgsI	TTSAA	3 cut(s)	109, 122, 333
AjnI	CCWGG	1 cut(s)	556
AluBI	AGCT	3 cut(s)	301, 391, 438
AluI	AGCT	3 cut(s)	301, 391, 438
AoxI	GGCC	1 cut(s)	451
ApeKI	GCWGC	3 cut(s)	4, 197, 533
AsuHPI	GGTGA	2 cut(s)	503, 514
AxyI	CCTNAGG	1 cut(s)	150
BbsI	GAAGAC	2 cut(s)	110, 116
BbvI	GCAGC	2 cut(s)	209, 520
BccI	CCATC	8 cut(s)	61, 77, 158, 266, 346, 388, 482, 516
BceAI	ACGGC	1 cut(s)	503
BciT130I	CCWGG	1 cut(s)	558
BisI	GCNGC	4 cut(s)	5, 198, 454, 534
BlsI	GCNGC	4 cut(s)	6, 199, 455, 535
Bme1390I	CCNGG	1 cut(s)	558
BmiI	GGNNCC	1 cut(s)	555
BmrFI	CCNGG	1 cut(s)	558
BpiI	GAAGAC	2 cut(s)	110, 116
BplI	GAGNNNNNCTC	3 cut(s)	422, 454, 545
BpmI	CTGGAG	1 cut(s)	265
Bpu10I	CCTNAGC	1 cut(s)	302
BsaBI	GATNNNNATC	1 cut(s)	237
BsaJI	CCNNGG	1 cut(s)	448
Bse1I	ACTGG	1 cut(s)	118
Bse21I	CCTNAGG	1 cut(s)	150
Bse8I	GATNNNNATC	1 cut(s)	237
BseBI	CCWGG	1 cut(s)	558
BseDI	CCNNGG	1 cut(s)	448
BseGI	GGATG	2 cut(s)	277, 474
BseJI	GATNNNNATC	1 cut(s)	237
BseMII	CTCAG	4 cut(s)	141, 375, 389, 453
BseNI	ACTGG	1 cut(s)	118
BseRI	GAGGAG	1 cut(s)	470
BseXI	GCAGC	2 cut(s)	209, 520
BsgI	GTGCAG	1 cut(s)	519
BshFI	GGCC	1 cut(s)	453
BslFI	GGGAC	1 cut(s)	65
BsmFI	GGGAC	1 cut(s)	65
BsnI	GGCC	1 cut(s)	453
Bsp143I	GATC	1 cut(s)	567
BspACI	CCGC	3 cut(s)	454, 500, 531
BspANI	GGCC	1 cut(s)	453
BspCNI	CTCAG	4 cut(s)	142, 374, 388, 452
BspLI	GGNNCC	1 cut(s)	555
BspQI	GCTCTTC	1 cut(s)	568
BsrI	ACTGG	1 cut(s)	118
BssECI	CCNNGG	1 cut(s)	448
BssMI	GATC	1 cut(s)	567
BssT1I	CCWWGG	1 cut(s)	448
Bst2UI	CCWGG	1 cut(s)	558
Bst6I	CTCTTC	2 cut(s)	347, 568
BstAPI	GCANNNNNTGC	1 cut(s)	13
BstC8I	GCNNGC	2 cut(s)	309, 406
BstDEI	CTNAG	5 cut(s)	150, 302, 361, 375, 439
BstF5I	GGATG	2 cut(s)	277, 474
BstKTI	GATC	1 cut(s)	570
BstMBI	GATC	1 cut(s)	567
BstMWI	GCNNNNNNNGC	3 cut(s)	13, 194, 421
BstNI	CCWGG	1 cut(s)	558
BstNSI	RCATGY	1 cut(s)	58
BstSCI	CCNGG	1 cut(s)	556
BstV1I	GCAGC	2 cut(s)	209, 520
BstV2I	GAAGAC	2 cut(s)	110, 116
Bsu36I	CCTNAGG	1 cut(s)	150
BsuRI	GGCC	1 cut(s)	453
BtsCI	GGATG	2 cut(s)	277, 474
Cac8I	GCNNGC	2 cut(s)	309, 406
CseI	GACGC	1 cut(s)	80
Csp6I	GTAC	1 cut(s)	433
CviAII	CATG	2 cut(s)	55, 428
CviQI	GTAC	1 cut(s)	433
DdeI	CTNAG	5 cut(s)	150, 302, 361, 375, 439
DpnI	GATC	1 cut(s)	569
DpnII	GATC	1 cut(s)	567
Eam1104I	CTCTTC	2 cut(s)	347, 568
EarI	CTCTTC	2 cut(s)	347, 568
Eco130I	CCWWGG	1 cut(s)	448
Eco57I	CTGAAG	1 cut(s)	404
Eco81I	CCTNAGG	1 cut(s)	150
EcoRII	CCWGG	1 cut(s)	556
EcoT14I	CCWWGG	1 cut(s)	448
ErhI	CCWWGG	1 cut(s)	448
FaeI	CATG	2 cut(s)	58, 431
FaiI	YATR	7 cut(s)	56, 99, 186, 257, 285, 323, 429
FaqI	GGGAC	1 cut(s)	65
FatI	CATG	2 cut(s)	54, 427
FauI	CCCGC	1 cut(s)	538
Fnu4HI	GCNGC	4 cut(s)	5, 198, 454, 534
FokI	GGATG	2 cut(s)	284, 461
Fsp4HI	GCNGC	4 cut(s)	5, 198, 454, 534
GluI	GCNGC	4 cut(s)	5, 198, 454, 534
GsuI	CTGGAG	1 cut(s)	265
HaeIII	GGCC	1 cut(s)	453
HgaI	GACGC	1 cut(s)	80
Hin1II	CATG	2 cut(s)	58, 431
HincII	GTYRAC	1 cut(s)	31
HindII	GTYRAC	1 cut(s)	31
HinfI	GANTC	1 cut(s)	365
HpaI	GTTAAC	1 cut(s)	31
HphI	GGTGA	2 cut(s)	503, 514
Hpy166II	GTNNAC	2 cut(s)	31, 60
Hpy188I	TCNGA	4 cut(s)	364, 378, 442, 553
Hpy188III	TCNNGA	2 cut(s)	179, 244
Hpy8I	GTNNAC	2 cut(s)	31, 60
HpyAV	CCTTC	1 cut(s)	394
HpyCH4V	TGCA	6 cut(s)	7, 16, 136, 188, 217, 536
HpyF10VI	GCNNNNNNNGC	3 cut(s)	13, 194, 421
HpyF3I	CTNAG	5 cut(s)	150, 302, 361, 375, 439
Hsp92II	CATG	2 cut(s)	58, 431
KspAI	GTTAAC	1 cut(s)	31
Kzo9I	GATC	1 cut(s)	567
LguI	GCTCTTC	1 cut(s)	568
LmnI	GCTCC	1 cut(s)	553
LpnPI	CCDG	6 cut(s)	34, 99, 162, 164, 229, 543
Lsp1109I	GCAGC	2 cut(s)	209, 520
MaeIII	GTNAC	3 cut(s)	91, 202, 520
MalI	GATC	1 cut(s)	569
MboI	GATC	1 cut(s)	567
MboII	GAAGA	4 cut(s)	110, 121, 334, 555
MluCI	AATT	4 cut(s)	11, 104, 207, 221
MlyI	GAGTC	1 cut(s)	374
MmeI	TCCRAC	1 cut(s)	531
MnlI	CCTC	5 cut(s)	94, 145, 350, 488, 491
MseI	TTAA	1 cut(s)	30
MslI	CAYNNNNRTG	1 cut(s)	65
MspA1I	CMGCKG	1 cut(s)	533
MspR9I	CCNGG	1 cut(s)	558
MvaI	CCWGG	1 cut(s)	558
MwoI	GCNNNNNNNGC	3 cut(s)	13, 194, 421
NdeII	GATC	1 cut(s)	567
NlaIII	CATG	2 cut(s)	58, 431
NlaIV	GGNNCC	1 cut(s)	555
NmuCI	GTSAC	1 cut(s)	520
NspI	RCATGY	1 cut(s)	58
PciI	ACATGT	1 cut(s)	54
PciSI	GCTCTTC	1 cut(s)	568
PkrI	GCNGC	4 cut(s)	6, 199, 455, 535
PleI	GAGTC	1 cut(s)	373
PpsI	GAGTC	1 cut(s)	373
PscI	ACATGT	1 cut(s)	54
Psp6I	CCWGG	1 cut(s)	556
PspGI	CCWGG	1 cut(s)	556
PspN4I	GGNNCC	1 cut(s)	555
RsaI	GTAC	1 cut(s)	434
RsaNI	GTAC	1 cut(s)	433
RseI	CAYNNNNRTG	1 cut(s)	65
SapI	GCTCTTC	1 cut(s)	568
SaqAI	TTAA	1 cut(s)	30
SatI	GCNGC	4 cut(s)	5, 198, 454, 534
Sau3AI	GATC	1 cut(s)	567
SchI	GAGTC	1 cut(s)	374
ScrFI	CCNGG	1 cut(s)	558
SetI	ASST	6 cut(s)	129, 151, 303, 342, 393, 440
SmiMI	CAYNNNNRTG	1 cut(s)	65
Sse9I	AATT	4 cut(s)	11, 104, 207, 221
SsiI	CCGC	3 cut(s)	454, 500, 531
StyD4I	CCNGG	1 cut(s)	556
StyI	CCWWGG	1 cut(s)	448
TaqI	TCGA	2 cut(s)	483, 566
TasI	AATT	4 cut(s)	11, 104, 207, 221
TatI	WGTACW	1 cut(s)	432
TauI	GCSGC	1 cut(s)	456
Tru1I	TTAA	1 cut(s)	30
Tru9I	TTAA	1 cut(s)	30
TseFI	GTSAC	1 cut(s)	520
TseI	GCWGC	3 cut(s)	4, 197, 533
Tsp45I	GTSAC	1 cut(s)	520
TspDTI	ATGAA	1 cut(s)	249
XceI	RCATGY	1 cut(s)	58

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.