Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0008160

Physical Location & Seq

Genomic Coordinates Reverse (-)

25652578 .. 25653745

Gene Structure 1168 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008106

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGTTCACATTGATGGACGCTGATAAAGATGGCAAAGTAACTTATGAGGAATTGAAGACTGGTCTTCAAAAGGTTGGTTTGCAGTTGGCTGAACCAGAGGCTGTTGTTGATGGGAATGGATTTCTGGATTATGCAGAGTTCGCAGCAGTTACAATTCACTTGCAAAAATTGGAGAATGATGAACATCTCTGGAGAGCATTTATATTCTACGACAAGGATGGAAGTGAGTATATTGATTTAGTTGAGCTAAGGCAAGCATTGGTAGATATGCCACTTTCAACCCACCTCTTCTCTTTGATGGCACTCCCAGAGTCGTTATCTCAGAAGTGGAAAGAGCTGATGGTGAAGGCTTGCTCAAAGCAACTTCAGCCCCATCAGTACAGCTCAGGTCTTCATCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009555 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010152 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0021700 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048229 GO:0048518 GO:0048583 GO:0048584 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0080134 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701 GO:1902584 GO:2000070

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7 Pkinase

Protein Analysis

134

Amino Acids

15.19

Weight (kDa)

4.98

Isoelectric Point (pI)

42.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_1	PF00036	1 - 24	2e-06	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008160)

Species	Orthologous Gene IDs
malus_domestica	MD07G1063200.v1.1
pyrus_communis	pycom02g21820 pycom02g21840
rosa_chinensis	RchiOBHm_Chr3g0470181
rosa_laevigata	RLG00000008106 RLG00000029152 RLG00000031580 RLG00000034936
rosa_multiflora	Rmu_co8301435.1_g000001 Rmu_co8456623.1_g000001 Rmu_sc0002799.1_g000014 Rmu_sc0014039.1_g000005
rosa_roxburghii	Rroxscaffold_3G00272930
rosa_rugosa	Rorug02G0162400 Rorug04G0088700
rosa_samantha	Rh1AG124000 Rh2BG466300 Rh3BG244000 Rh3CG171600 Rh4AG140600 Rh5BG342900 Rh5CG369900 Rh6AG182300 Rh7BG390200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	350
AfaI	GTAC	1 cut(s)	380
AgsI	TTSAA	3 cut(s)	55, 68, 279
AluBI	AGCT	3 cut(s)	247, 337, 384
AluI	AGCT	3 cut(s)	247, 337, 384
AlwNI	CAGNNNCTG	1 cut(s)	101
ApeKI	GCWGC	1 cut(s)	143
AsuHPI	GGTGA	1 cut(s)	355
BbsI	GAAGAC	3 cut(s)	56, 62, 383
BbvI	GCAGC	1 cut(s)	155
BccI	CCATC	7 cut(s)	7, 23, 104, 212, 292, 334, 381
BisI	GCNGC	1 cut(s)	144
BlsI	GCNGC	1 cut(s)	145
BpiI	GAAGAC	3 cut(s)	56, 62, 383
BpmI	CTGGAG	1 cut(s)	211
Bpu10I	CCTNAGC	2 cut(s)	248, 385
BsaBI	GATNNNNATC	1 cut(s)	183
Bse1I	ACTGG	1 cut(s)	64
Bse8I	GATNNNNATC	1 cut(s)	183
BseGI	GGATG	1 cut(s)	223
BseJI	GATNNNNATC	1 cut(s)	183
BseMII	CTCAG	2 cut(s)	335, 399
BseNI	ACTGG	1 cut(s)	64
BseXI	GCAGC	1 cut(s)	155
BspCNI	CTCAG	2 cut(s)	334, 398
BsrI	ACTGG	1 cut(s)	64
Bst6I	CTCTTC	1 cut(s)	293
BstC8I	GCNNGC	2 cut(s)	255, 352
BstDEI	CTNAG	3 cut(s)	248, 321, 385
BstF5I	GGATG	1 cut(s)	223
BstMWI	GCNNNNNNNGC	2 cut(s)	140, 367
BstV1I	GCAGC	1 cut(s)	155
BstV2I	GAAGAC	3 cut(s)	56, 62, 383
BtsCI	GGATG	1 cut(s)	223
Cac8I	GCNNGC	2 cut(s)	255, 352
CaiI	CAGNNNCTG	1 cut(s)	101
CseI	GACGC	1 cut(s)	26
Csp6I	GTAC	1 cut(s)	379
CviJI	RGCY	7 cut(s)	89, 101, 247, 337, 350, 370, 384
CviKI_1	RGCY	7 cut(s)	89, 101, 247, 337, 350, 370, 384
CviQI	GTAC	1 cut(s)	379
DdeI	CTNAG	3 cut(s)	248, 321, 385
Eam1104I	CTCTTC	1 cut(s)	293
EarI	CTCTTC	1 cut(s)	293
Eco57I	CTGAAG	1 cut(s)	350
FaiI	YATR	5 cut(s)	45, 132, 203, 231, 269
Fnu4HI	GCNGC	1 cut(s)	144
FokI	GGATG	1 cut(s)	230
Fsp4HI	GCNGC	1 cut(s)	144
GluI	GCNGC	1 cut(s)	144
GsuI	CTGGAG	1 cut(s)	211
HgaI	GACGC	1 cut(s)	26
HinfI	GANTC	1 cut(s)	311
HphI	GGTGA	1 cut(s)	355
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	1 cut(s)	324
Hpy188III	TCNNGA	2 cut(s)	125, 190
Hpy8I	GTNNAC	1 cut(s)	6
HpyAV	CCTTC	1 cut(s)	340
HpyCH4V	TGCA	3 cut(s)	82, 134, 163
HpyF10VI	GCNNNNNNNGC	2 cut(s)	140, 367
HpyF3I	CTNAG	3 cut(s)	248, 321, 385
LpnPI	CCDG	6 cut(s)	45, 108, 110, 175, 321, 372
Lsp1109I	GCAGC	1 cut(s)	155
MaeIII	GTNAC	2 cut(s)	37, 148
MboII	GAAGA	4 cut(s)	56, 67, 280, 383
MluCI	AATT	3 cut(s)	50, 153, 167
MlyI	GAGTC	1 cut(s)	320
MnlI	CCTC	3 cut(s)	40, 91, 296
MslI	CAYNNNNRTG	1 cut(s)	11
MwoI	GCNNNNNNNGC	2 cut(s)	140, 367
PkrI	GCNGC	1 cut(s)	145
PleI	GAGTC	1 cut(s)	319
PpsI	GAGTC	1 cut(s)	319
PstNI	CAGNNNCTG	1 cut(s)	101
RsaI	GTAC	1 cut(s)	380
RsaNI	GTAC	1 cut(s)	379
RseI	CAYNNNNRTG	1 cut(s)	11
SatI	GCNGC	1 cut(s)	144
SchI	GAGTC	1 cut(s)	320
SetI	ASST	6 cut(s)	75, 249, 288, 339, 386, 391
SgeI	CNNG	9 cut(s)	72, 107, 137, 172, 202, 226, 266, 320, 363
SmiMI	CAYNNNNRTG	1 cut(s)	11
Sse9I	AATT	3 cut(s)	50, 153, 167
TasI	AATT	3 cut(s)	50, 153, 167
TatI	WGTACW	1 cut(s)	378
TseI	GCWGC	1 cut(s)	143
TspDTI	ATGAA	2 cut(s)	195, 383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.