Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0008160

Physical Location & Seq

Genomic Coordinates Reverse (-)

64873460 .. 64877826

Gene Structure 4367 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00272930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGCTCGACCCGGATCCTAAAAAACGCTTGACTGCTCAACAGGTGCTTGAACATCCATGGTTACAAAATGCAAAGAAAGCTCCAAATGTTCCATTAGGAGATATTGTGAGGCCAAGGCTCAAGCAGTTCTCAATAATGAATAGATTTAAAAAGAAGGCCTTACGGGTAATTGCGGAGCACTTATCTGTTAAAGAAGTAGAAGTAATCAGGGACATGTTCACATTGATGGACACTGATAAAGATGGCAGAGTAACTTATGAGGAATTGAAGACTGGTCTTCAAAAGGTTGGTTCGCAGTTGGCTGAACCAGAGGTTAAGATGCTAATGGAAGTGGCTGATGTTGATGGGAATGGATTTCTGGATTATGGAGAGTTCGCAGCAGTTACAATTCACTTGCAAAAATTGGAGAATGATGAACATCTCCGGAGAGCATTTATATTCTTTGACAAGGATGGAAGTGGGTATATTGAATTAGTTGAGCTAAGGCAAGCATTGGCAGATGAAACAGGTGAAACGGATATTGATGTGCTGACTGACATCATGCGTGAGGTGGATACTGACAAGGATGGGCGTATCAGTTATGATGAGTTTGTTGCCATGATGAAAACTGGAACTGATTGGAGAAAGGCGTCTCGACAGTATTCTAGGGAAAGATTCAAGAGTTTAAGCCTCAATCTGATGAAAGATGGTTCATTACAGCTTCACGATGGGCTAACGGGTCAAGCCGTTGCCGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009555 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010152 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0021700 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048229 GO:0048518 GO:0048583 GO:0048584 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0080134 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701 GO:1902584 GO:2000070

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7 Pkinase

Protein Analysis

245

Amino Acids

27.98

Weight (kDa)

5.39

Isoelectric Point (pI)

21.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	67 - 128	1.2e-11	EF-hand domain pair
EF-hand_1	PF00036	69 - 95	2e-07	EF hand domain
EF-hand_6	PF13405	69 - 97	4.3e-06	EF-hand domain
EF-hand_5	PF13202	69 - 91	5.5e-06	EF hand
EF-hand_7	PF13499	139 - 202	1e-16	EF-hand domain pair
EF-hand_6	PF13405	141 - 166	1.8e-06	EF-hand domain
EF-hand_1	PF00036	178 - 203	8.5e-09	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0008160)

Species	Orthologous Gene IDs
malus_domestica	MD07G1063200.v1.1
pyrus_communis	pycom02g21820 pycom02g21840
rosa_chinensis	RchiOBHm_Chr3g0470181
rosa_laevigata	RLG00000008106 RLG00000029152 RLG00000031580 RLG00000034936
rosa_multiflora	Rmu_co8301435.1_g000001 Rmu_co8456623.1_g000001 Rmu_sc0002799.1_g000014 Rmu_sc0014039.1_g000005
rosa_roxburghii	Rroxscaffold_3G00272930
rosa_rugosa	Rorug02G0162400 Rorug04G0088700
rosa_samantha	Rh1AG124000 Rh2BG466300 Rh3BG244000 Rh3CG171600 Rh4AG140600 Rh5BG342900 Rh5CG369900 Rh6AG182300 Rh7BG390200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	423
AciI	CCGC	1 cut(s)	173
AclWI	GGATC	2 cut(s)	8, 21
AcyI	GRCGYC	1 cut(s)	629
AflIII	ACRYGT	1 cut(s)	213
AgsI	TTSAA	5 cut(s)	50, 268, 281, 470, 658
AluBI	AGCT	3 cut(s)	80, 481, 700
AluI	AGCT	3 cut(s)	80, 481, 700
Alw21I	GWGCWC	1 cut(s)	180
Alw26I	GTCTC	1 cut(s)	636
AlwI	GGATC	2 cut(s)	8, 21
Aor13HI	TCCGGA	1 cut(s)	423
AoxI	GGCC	2 cut(s)	110, 156
ApeKI	GCWGC	1 cut(s)	377
AsuC2I	CCSGG	1 cut(s)	11
AsuHPI	GGTGA	1 cut(s)	521
BamHI	GGATCC	1 cut(s)	13
BbsI	GAAGAC	2 cut(s)	269, 275
Bbv12I	GWGCWC	1 cut(s)	180
BbvI	GCAGC	1 cut(s)	389
BccI	CCATC	7 cut(s)	220, 236, 338, 446, 560, 680, 701
BceAI	ACGGC	2 cut(s)	710, 716
BciVI	GTATCC	1 cut(s)	547
BcnI	CCSGG	1 cut(s)	11
BcoDI	GTCTC	1 cut(s)	636
BfaI	CTAG	1 cut(s)	645
BfuI	GTATCC	1 cut(s)	547
BisI	GCNGC	1 cut(s)	378
BlsI	GCNGC	1 cut(s)	379
Bme1390I	CCNGG	1 cut(s)	11
BmiI	GGNNCC	1 cut(s)	15
BmrFI	CCNGG	1 cut(s)	11
BmsI	GCATC	1 cut(s)	309
BpiI	GAAGAC	2 cut(s)	269, 275
Bpu10I	CCTNAGC	1 cut(s)	482
BpuEI	CTTGAG	1 cut(s)	104
BpuMI	CCSGG	1 cut(s)	11
BsaBI	GATNNNNATC	1 cut(s)	417
BsaHI	GRCGYC	1 cut(s)	629
BsaJI	CCNNGG	2 cut(s)	56, 113
BsaWI	WCCGGW	1 cut(s)	423
BsaXI	ACNNNNNCTCC	2 cut(s)	90, 120
Bse1I	ACTGG	2 cut(s)	277, 613
Bse8I	GATNNNNATC	1 cut(s)	417
BseAI	TCCGGA	1 cut(s)	423
BseDI	CCNNGG	2 cut(s)	56, 113
BseGI	GGATG	3 cut(s)	52, 457, 571
BseJI	GATNNNNATC	1 cut(s)	417
BseNI	ACTGG	2 cut(s)	277, 613
BseXI	GCAGC	1 cut(s)	389
BshFI	GGCC	2 cut(s)	112, 158
BsiHKAI	GWGCWC	1 cut(s)	180
BsiSI	CCGG	2 cut(s)	11, 424
BslFI	GGGAC	1 cut(s)	224
BsmAI	GTCTC	1 cut(s)	636
BsmBI	CGTCTC	1 cut(s)	636
BsmFI	GGGAC	1 cut(s)	224
BsnI	GGCC	2 cut(s)	112, 158
Bsp1286I	GDGCHC	1 cut(s)	180
Bsp13I	TCCGGA	1 cut(s)	423
Bsp143I	GATC	1 cut(s)	13
Bsp19I	CCATGG	1 cut(s)	56
BspACI	CCGC	1 cut(s)	173
BspANI	GGCC	2 cut(s)	112, 158
BspEI	TCCGGA	1 cut(s)	423
BspLI	GGNNCC	1 cut(s)	15
BspPI	GGATC	2 cut(s)	8, 21
BsrI	ACTGG	2 cut(s)	277, 613
BssECI	CCNNGG	2 cut(s)	56, 113
BssMI	GATC	1 cut(s)	13
BssNI	GRCGYC	1 cut(s)	629
BssT1I	CCWWGG	2 cut(s)	56, 113
Bst4CI	ACNGT	1 cut(s)	639
BstACI	GRCGYC	1 cut(s)	629
BstC8I	GCNNGC	1 cut(s)	489
BstDEI	CTNAG	1 cut(s)	482
BstDSI	CCRYGG	1 cut(s)	56
BstF5I	GGATG	3 cut(s)	52, 457, 571
BstKTI	GATC	1 cut(s)	16
BstMAI	GTCTC	1 cut(s)	636
BstMBI	GATC	1 cut(s)	13
BstMWI	GCNNNNNNNGC	1 cut(s)	77
BstNSI	RCATGY	1 cut(s)	217
BstSCI	CCNGG	1 cut(s)	9
BstV1I	GCAGC	1 cut(s)	389
BstV2I	GAAGAC	2 cut(s)	269, 275
BstX2I	RGATCY	1 cut(s)	13
BstYI	RGATCY	1 cut(s)	13
BsuI	GTATCC	1 cut(s)	547
BsuRI	GGCC	2 cut(s)	112, 158
BtgI	CCRYGG	1 cut(s)	56
BtsCI	GGATG	3 cut(s)	52, 457, 571
BtsIMutI	CAGTG	1 cut(s)	231
Cac8I	GCNNGC	1 cut(s)	489
CseI	GACGC	1 cut(s)	618
CviAII	CATG	4 cut(s)	57, 214, 541, 598
DdeI	CTNAG	1 cut(s)	482
DpnI	GATC	1 cut(s)	15
DpnII	GATC	1 cut(s)	13
DraI	TTTAAA	1 cut(s)	148
Eco130I	CCWWGG	2 cut(s)	56, 113
Eco147I	AGGCCT	1 cut(s)	158
EcoT14I	CCWWGG	2 cut(s)	56, 113
ErhI	CCWWGG	2 cut(s)	56, 113
Esp3I	CGTCTC	1 cut(s)	636
FaeI	CATG	4 cut(s)	60, 217, 544, 601
FalI	AAGNNNNNCTT	2 cut(s)	143, 175
FaqI	GGGAC	1 cut(s)	224
FatI	CATG	4 cut(s)	56, 213, 540, 597
Fnu4HI	GCNGC	1 cut(s)	378
FokI	GGATG	3 cut(s)	39, 464, 578
Fsp4HI	GCNGC	1 cut(s)	378
FspBI	CTAG	1 cut(s)	645
GluI	GCNGC	1 cut(s)	378
HaeIII	GGCC	2 cut(s)	112, 158
HapII	CCGG	2 cut(s)	11, 424
HgaI	GACGC	1 cut(s)	618
Hin1I	GRCGYC	1 cut(s)	629
Hin1II	CATG	4 cut(s)	60, 217, 544, 601
HinfI	GANTC	1 cut(s)	654
HpaII	CCGG	2 cut(s)	11, 424
HphI	GGTGA	1 cut(s)	521
Hpy166II	GTNNAC	1 cut(s)	219
Hpy188I	TCNGA	1 cut(s)	678
Hpy188III	TCNNGA	5 cut(s)	359, 424, 633, 658, 704
Hpy8I	GTNNAC	1 cut(s)	219
HpyAV	CCTTC	1 cut(s)	148
HpyCH4III	ACNGT	1 cut(s)	639
HpyCH4V	TGCA	2 cut(s)	71, 397
HpyF10VI	GCNNNNNNNGC	1 cut(s)	77
HpyF3I	CTNAG	1 cut(s)	482
Hsp92I	GRCGYC	1 cut(s)	629
Hsp92II	CATG	4 cut(s)	60, 217, 544, 601
Kpn2I	TCCGGA	1 cut(s)	423
Kzo9I	GATC	1 cut(s)	13
LmnI	GCTCC	2 cut(s)	85, 175
LpnPI	CCDG	9 cut(s)	24, 26, 193, 258, 321, 344, 437, 492, 594
Lsp1109I	GCAGC	1 cut(s)	389
LweI	GCATC	1 cut(s)	309
MaeI	CTAG	1 cut(s)	645
MaeIII	GTNAC	3 cut(s)	60, 250, 382
MalI	GATC	1 cut(s)	15
MboI	GATC	1 cut(s)	13
MboII	GAAGA	2 cut(s)	269, 280
MflI	RGATCY	1 cut(s)	13
MhlI	GDGCHC	1 cut(s)	180
MluCI	AATT	5 cut(s)	168, 263, 387, 401, 470
MnlI	CCTC	5 cut(s)	102, 253, 304, 541, 680
MroI	TCCGGA	1 cut(s)	423
MseI	TTAA	4 cut(s)	147, 189, 315, 665
MslI	CAYNNNNRTG	1 cut(s)	224
MspI	CCGG	2 cut(s)	11, 424
MspR9I	CCNGG	1 cut(s)	11
MwoI	GCNNNNNNNGC	1 cut(s)	77
NciI	CCSGG	1 cut(s)	11
NcoI	CCATGG	1 cut(s)	56
NdeII	GATC	1 cut(s)	13
NlaIII	CATG	4 cut(s)	60, 217, 544, 601
NlaIV	GGNNCC	1 cut(s)	15
NspI	RCATGY	1 cut(s)	217
PceI	AGGCCT	1 cut(s)	158
PciI	ACATGT	1 cut(s)	213
PfeI	GAWTC	1 cut(s)	654
PkrI	GCNGC	1 cut(s)	379
PscI	ACATGT	1 cut(s)	213
PspN4I	GGNNCC	1 cut(s)	15
PsuI	RGATCY	1 cut(s)	13
RseI	CAYNNNNRTG	1 cut(s)	224
SaqAI	TTAA	4 cut(s)	147, 189, 315, 665
SatI	GCNGC	1 cut(s)	378
Sau3AI	GATC	1 cut(s)	13
ScrFI	CCNGG	1 cut(s)	11
SduI	GDGCHC	1 cut(s)	180
SetI	ASST	8 cut(s)	45, 82, 288, 315, 483, 511, 552, 702
SfaNI	GCATC	1 cut(s)	309
SmiMI	CAYNNNNRTG	1 cut(s)	224
SmlI	CTYRAG	1 cut(s)	119
SmoI	CTYRAG	1 cut(s)	119
Sse9I	AATT	5 cut(s)	168, 263, 387, 401, 470
SseBI	AGGCCT	1 cut(s)	158
SsiI	CCGC	1 cut(s)	173
SspMI	CTAG	1 cut(s)	645
StuI	AGGCCT	1 cut(s)	158
StyD4I	CCNGG	1 cut(s)	9
StyI	CCWWGG	2 cut(s)	56, 113
TaaI	ACNGT	1 cut(s)	639
TaqI	TCGA	2 cut(s)	6, 634
TasI	AATT	5 cut(s)	168, 263, 387, 401, 470
TfiI	GAWTC	1 cut(s)	654
Tru1I	TTAA	4 cut(s)	147, 189, 315, 665
Tru9I	TTAA	4 cut(s)	147, 189, 315, 665
TscAI	CASTG	1 cut(s)	238
TseI	GCWGC	1 cut(s)	377
TspDTI	ATGAA	6 cut(s)	152, 429, 516, 617, 681, 695
TspGWI	ACGGA	1 cut(s)	530
TspRI	CASTG	1 cut(s)	238
XceI	RCATGY	1 cut(s)	217
XspI	CTAG	1 cut(s)	645

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.