Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0008160

Physical Location & Seq

Genomic Coordinates Reverse (-)

51882612 .. 51883895

Gene Structure 1284 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG342900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGACAGAATCGGAACATGGGATATTCAACGCAATATTACGTGGTCACCTCGACTTTTCAAGCGACCCATGGCCTGCAATATCGGCTCAAGCAAAGGATCTTGTGAGGAAGATGTTGAATTCAGATCCCAAGCAGAGATTGACAGCCTTCCAAGTCATCCATGGATCAAGGAGGATGGTGAAGCACCAGATGTTCCTCTCGACAATGCTGTGCTCAGCAGGCTCAAACAGTTCAAAGCAATGAATCAGTTTAAGAAAGTTGCCCTTCGGGTTATCGCCGGTTGCTTATCAGAGGAAGAGATCATGGGATTGAAAGAGATGTTCAAGAGCATAGATACAGACAACAGTGGGACTATCACACTTGAAGAGCTCAAGCAAGGTCTTGCTAAGCAAGGCACCAAGTTATCTGAACACGAAGCTAAACAACTAATGGAAGCTGCCGATGCTGATGGGAACGGAACCATAGACTATGATGAGTTCATCACTGCAACGATGCACTTGAACAGAATGGATAGAGAAGAGCATCTCTACACTGCCTTCCAGCACTTCGATAAAGATAGCAGCGGGTTTATCACGACTGAAGAGCTAGAGTCAGCCCTCCGCGACTACGGGATGCATGATGGAAGGGACATAAGAGAAATCATTGCTGAAGTCGACGCTGATAATGACGGTCGAATCAACTACGATGAATTTGTGGCAATGATGAGAAAAGGAAACCCAGAACCAAACCTGAAAAAGCGGCGGGACGATGTATTTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0001558 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010769 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022603 GO:0022604 GO:0023052 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0040008 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043900 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045595 GO:0046777 GO:0048638 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051239 GO:0051510 GO:0051716 GO:0060284 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0080092 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 Pkinase

Protein Analysis

253

Amino Acids

28.83

Weight (kDa)

4.81

Isoelectric Point (pI)

46.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_1	PF00036	104 - 130	6.7e-08	EF hand domain
EF-hand_7	PF13499	104 - 164	4.2e-16	EF-hand domain pair
EF-hand_6	PF13405	104 - 130	4.8e-07	EF-hand domain
EF-hand_5	PF13202	104 - 126	5.3e-06	EF hand
EF-hand_1	PF00036	139 - 166	3.2e-06	EF hand domain
EF-hand_7	PF13499	173 - 236	2.4e-17	EF-hand domain pair
EF-hand_6	PF13405	176 - 204	1e-06	EF-hand domain
EF-hand_1	PF00036	178 - 202	4.3e-06	EF hand domain
EF-hand_8	PF13833	188 - 237	6.6e-06	EF-hand domain pair
EF-hand_1	PF00036	210 - 237	5.7e-09	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0008160)

Species	Orthologous Gene IDs
malus_domestica	MD07G1063200.v1.1
pyrus_communis	pycom02g21820 pycom02g21840
rosa_chinensis	RchiOBHm_Chr3g0470181
rosa_laevigata	RLG00000008106 RLG00000029152 RLG00000031580 RLG00000034936
rosa_multiflora	Rmu_co8301435.1_g000001 Rmu_co8456623.1_g000001 Rmu_sc0002799.1_g000014 Rmu_sc0014039.1_g000005
rosa_roxburghii	Rroxscaffold_3G00272930
rosa_rugosa	Rorug02G0162400 Rorug04G0088700
rosa_samantha	Rh1AG124000 Rh2BG466300 Rh3BG244000 Rh3CG171600 Rh4AG140600 Rh5BG342900 Rh5CG369900 Rh6AG182300 Rh7BG390200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	395
AccI	GTMKAC	1 cut(s)	654
AccII	CGCG	1 cut(s)	603
AciI	CCGC	4 cut(s)	564, 601, 739, 742
AclWI	GGATC	3 cut(s)	106, 120, 173
AcsI	RAATTY	2 cut(s)	119, 689
AcuI	CTGAAG	2 cut(s)	600, 669
AgsI	TTSAA	8 cut(s)	29, 61, 119, 235, 313, 325, 365, 502
AluBI	AGCT	4 cut(s)	370, 419, 437, 586
AluI	AGCT	4 cut(s)	370, 419, 437, 586
Alw21I	GWGCWC	2 cut(s)	216, 372
AlwI	GGATC	3 cut(s)	106, 120, 173
AoxI	GGCC	1 cut(s)	72
ApeKI	GCWGC	2 cut(s)	437, 561
ApoI	RAATTY	2 cut(s)	119, 689
ArsI	GACNNNNNNTTYG	1 cut(s)	737
AsuHPI	GGTGA	2 cut(s)	39, 191
BanI	GGYRCC	1 cut(s)	395
BanII	GRGCYC	1 cut(s)	372
Bbv12I	GWGCWC	2 cut(s)	216, 372
BbvI	GCAGC	2 cut(s)	424, 573
BccI	CCATC	3 cut(s)	170, 443, 614
BfaI	CTAG	1 cut(s)	587
BisI	GCNGC	3 cut(s)	438, 562, 740
BlpI	GCTNAGC	2 cut(s)	215, 387
BlsI	GCNGC	3 cut(s)	439, 563, 741
BmiI	GGNNCC	2 cut(s)	397, 460
BmsI	GCATC	4 cut(s)	433, 483, 532, 603
Bpu1102I	GCTNAGC	2 cut(s)	215, 387
BpuEI	CTTGAG	2 cut(s)	73, 356
BsaAI	YACGTR	1 cut(s)	42
BsaJI	CCNNGG	2 cut(s)	69, 161
Bse118I	RCCGGY	1 cut(s)	278
Bse3DI	GCAATG	3 cut(s)	246, 642, 705
BseDI	CCNNGG	2 cut(s)	69, 161
BseGI	GGATG	3 cut(s)	157, 181, 618
BseMI	GCAATG	3 cut(s)	246, 642, 705
BseMII	CTCAG	1 cut(s)	229
BseXI	GCAGC	2 cut(s)	424, 573
Bsh1236I	CGCG	1 cut(s)	603
Bsh1285I	CGRYCG	1 cut(s)	673
BshFI	GGCC	1 cut(s)	74
BshNI	GGYRCC	1 cut(s)	395
BsiEI	CGRYCG	1 cut(s)	673
BsiHKAI	GWGCWC	2 cut(s)	216, 372
BsiSI	CCGG	1 cut(s)	279
BslFI	GGGAC	3 cut(s)	364, 641, 758
BsmFI	GGGAC	3 cut(s)	364, 641, 758
BsnI	GGCC	1 cut(s)	74
Bsp1286I	GDGCHC	2 cut(s)	216, 372
Bsp143I	GATC	4 cut(s)	98, 125, 165, 300
Bsp1720I	GCTNAGC	2 cut(s)	215, 387
Bsp19I	CCATGG	2 cut(s)	69, 161
BspACI	CCGC	4 cut(s)	564, 601, 739, 742
BspANI	GGCC	1 cut(s)	74
BspCNI	CTCAG	1 cut(s)	228
BspFNI	CGCG	1 cut(s)	603
BspLI	GGNNCC	2 cut(s)	397, 460
BspPI	GGATC	3 cut(s)	106, 120, 173
BspQI	GCTCTTC	3 cut(s)	360, 513, 576
BspT107I	GGYRCC	1 cut(s)	395
BsrDI	GCAATG	3 cut(s)	246, 642, 705
BsrFI	RCCGGY	1 cut(s)	278
BssAI	RCCGGY	1 cut(s)	278
BssECI	CCNNGG	2 cut(s)	69, 161
BssMI	GATC	4 cut(s)	98, 125, 165, 300
BssT1I	CCWWGG	2 cut(s)	69, 161
Bst4CI	ACNGT	3 cut(s)	231, 347, 671
Bst6I	CTCTTC	4 cut(s)	291, 360, 513, 576
BstBAI	YACGTR	1 cut(s)	42
BstC8I	GCNNGC	2 cut(s)	76, 221
BstDEI	CTNAG	2 cut(s)	215, 387
BstDSI	CCRYGG	2 cut(s)	69, 161
BstEII	GGTNACC	1 cut(s)	45
BstF5I	GGATG	3 cut(s)	157, 181, 618
BstFNI	CGCG	1 cut(s)	603
BstKTI	GATC	4 cut(s)	101, 128, 168, 303
BstMBI	GATC	4 cut(s)	98, 125, 165, 300
BstMCI	CGRYCG	1 cut(s)	673
BstMWI	GCNNNNNNNGC	3 cut(s)	84, 220, 443
BstPI	GGTNACC	1 cut(s)	45
BstUI	CGCG	1 cut(s)	603
BstV1I	GCAGC	2 cut(s)	424, 573
BstX2I	RGATCY	2 cut(s)	98, 125
BstYI	RGATCY	2 cut(s)	98, 125
BsuRI	GGCC	1 cut(s)	74
BtgI	CCRYGG	2 cut(s)	69, 161
BtsCI	GGATG	3 cut(s)	157, 181, 618
BtsI	GCAGTG	2 cut(s)	483, 531
BtsIMutI	CAGTG	3 cut(s)	352, 483, 531
Cac8I	GCNNGC	2 cut(s)	76, 221
Cfr10I	RCCGGY	1 cut(s)	278
CseI	GACGC	1 cut(s)	665
CviAII	CATG	5 cut(s)	18, 70, 162, 304, 617
CviJI	RGCY	9 cut(s)	74, 87, 147, 223, 370, 419, 437, 586, 596
CviKI_1	RGCY	9 cut(s)	74, 87, 147, 223, 370, 419, 437, 586, 596
DdeI	CTNAG	2 cut(s)	215, 387
DpnI	GATC	4 cut(s)	100, 127, 167, 302
DpnII	GATC	4 cut(s)	98, 125, 165, 300
Eam1104I	CTCTTC	4 cut(s)	291, 360, 513, 576
EarI	CTCTTC	4 cut(s)	291, 360, 513, 576
Ecl136II	GAGCTC	1 cut(s)	370
Eco130I	CCWWGG	2 cut(s)	69, 161
Eco24I	GRGCYC	1 cut(s)	372
Eco53kI	GAGCTC	1 cut(s)	370
Eco57I	CTGAAG	2 cut(s)	600, 669
Eco91I	GGTNACC	1 cut(s)	45
EcoICRI	GAGCTC	1 cut(s)	370
EcoO65I	GGTNACC	1 cut(s)	45
EcoRI	GAATTC	1 cut(s)	119
EcoT14I	CCWWGG	2 cut(s)	69, 161
EcoT22I	ATGCAT	1 cut(s)	618
EcoT38I	GRGCYC	1 cut(s)	372
ErhI	CCWWGG	2 cut(s)	69, 161
FaeI	CATG	5 cut(s)	21, 73, 165, 307, 620
FaiI	YATR	9 cut(s)	19, 71, 163, 305, 332, 464, 471, 618, 632
FalI	AAGNNNNNCTT	2 cut(s)	249, 281
FaqI	GGGAC	3 cut(s)	364, 641, 758
FatI	CATG	5 cut(s)	17, 69, 161, 303, 616
FauI	CCCGC	2 cut(s)	557, 735
FblI	GTMKAC	1 cut(s)	654
Fnu4HI	GCNGC	3 cut(s)	438, 562, 740
FokI	GGATG	3 cut(s)	144, 188, 625
FriOI	GRGCYC	1 cut(s)	372
Fsp4HI	GCNGC	3 cut(s)	438, 562, 740
FspBI	CTAG	1 cut(s)	587
GluI	GCNGC	3 cut(s)	438, 562, 740
HaeIII	GGCC	1 cut(s)	74
HapII	CCGG	1 cut(s)	279
HgaI	GACGC	1 cut(s)	665
Hin1II	CATG	5 cut(s)	21, 73, 165, 307, 620
HincII	GTYRAC	1 cut(s)	655
HindII	GTYRAC	1 cut(s)	655
HinfI	GANTC	4 cut(s)	9, 244, 590, 675
HpaII	CCGG	1 cut(s)	279
HphI	GGTGA	2 cut(s)	39, 191
Hpy166II	GTNNAC	1 cut(s)	655
Hpy188I	TCNGA	4 cut(s)	14, 125, 292, 409
Hpy188III	TCNNGA	3 cut(s)	200, 325, 574
Hpy8I	GTNNAC	1 cut(s)	655
Hpy99I	CGWCG	1 cut(s)	659
HpyAV	CCTTC	4 cut(s)	158, 275, 547, 618
HpyCH4III	ACNGT	3 cut(s)	231, 347, 671
HpyCH4IV	ACGT	1 cut(s)	41
HpyCH4V	TGCA	4 cut(s)	78, 488, 496, 616
HpyF10VI	GCNNNNNNNGC	3 cut(s)	84, 220, 443
HpyF3I	CTNAG	2 cut(s)	215, 387
HpySE526I	ACGT	1 cut(s)	41
Hsp92II	CATG	5 cut(s)	21, 73, 165, 307, 620
Kzo9I	GATC	4 cut(s)	98, 125, 165, 300
LguI	GCTCTTC	3 cut(s)	360, 513, 576
LpnPI	CCDG	7 cut(s)	88, 201, 205, 292, 554, 732, 743
Lsp1109I	GCAGC	2 cut(s)	424, 573
LweI	GCATC	4 cut(s)	433, 483, 532, 603
MaeI	CTAG	1 cut(s)	587
MaeII	ACGT	1 cut(s)	41
MaeIII	GTNAC	1 cut(s)	45
MalI	GATC	4 cut(s)	100, 127, 167, 302
MboI	GATC	4 cut(s)	98, 125, 165, 300
MboII	GAAGA	5 cut(s)	122, 308, 377, 530, 593
MflI	RGATCY	2 cut(s)	98, 125
MhlI	GDGCHC	2 cut(s)	216, 372
MluCI	AATT	2 cut(s)	119, 689
MlyI	GAGTC	1 cut(s)	599
MnlI	CCTC	6 cut(s)	60, 100, 166, 207, 286, 608
Mph1103I	ATGCAT	1 cut(s)	618
MseI	TTAA	1 cut(s)	252
MspA1I	CMGCKG	1 cut(s)	564
MspI	CCGG	1 cut(s)	279
MvnI	CGCG	1 cut(s)	603
MwoI	GCNNNNNNNGC	3 cut(s)	84, 220, 443
NcoI	CCATGG	2 cut(s)	69, 161
NdeII	GATC	4 cut(s)	98, 125, 165, 300
NlaIII	CATG	5 cut(s)	21, 73, 165, 307, 620
NlaIV	GGNNCC	2 cut(s)	397, 460
NmuCI	GTSAC	1 cut(s)	45
NsiI	ATGCAT	1 cut(s)	618
PciSI	GCTCTTC	3 cut(s)	360, 513, 576
PfeI	GAWTC	3 cut(s)	9, 244, 675
PkrI	GCNGC	3 cut(s)	439, 563, 741
PleI	GAGTC	1 cut(s)	598
PpsI	GAGTC	1 cut(s)	598
Ppu21I	YACGTR	1 cut(s)	42
Psp124BI	GAGCTC	1 cut(s)	372
PspEI	GGTNACC	1 cut(s)	45
PspN4I	GGNNCC	2 cut(s)	397, 460
PsuI	RGATCY	2 cut(s)	98, 125
SacI	GAGCTC	1 cut(s)	372
SalI	GTCGAC	1 cut(s)	653
SapI	GCTCTTC	3 cut(s)	360, 513, 576
SaqAI	TTAA	1 cut(s)	252
SatI	GCNGC	3 cut(s)	438, 562, 740
Sau3AI	GATC	4 cut(s)	98, 125, 165, 300
SchI	GAGTC	1 cut(s)	599
SduI	GDGCHC	2 cut(s)	216, 372
SetI	ASST	8 cut(s)	44, 52, 372, 382, 421, 439, 588, 732
SfaNI	GCATC	4 cut(s)	433, 483, 532, 603
SmlI	CTYRAG	2 cut(s)	88, 371
SmoI	CTYRAG	2 cut(s)	88, 371
Sse9I	AATT	2 cut(s)	119, 689
SsiI	CCGC	4 cut(s)	564, 601, 739, 742
SspI	AATATT	1 cut(s)	37
SspMI	CTAG	1 cut(s)	587
SstI	GAGCTC	1 cut(s)	372
StyI	CCWWGG	2 cut(s)	69, 161
TaaI	ACNGT	3 cut(s)	231, 347, 671
TaiI	ACGT	1 cut(s)	44
TaqI	TCGA	5 cut(s)	52, 201, 549, 654, 673
TasI	AATT	2 cut(s)	119, 689
TauI	GCSGC	1 cut(s)	742
TfiI	GAWTC	3 cut(s)	9, 244, 675
Tru1I	TTAA	1 cut(s)	252
Tru9I	TTAA	1 cut(s)	252
TscAI	CASTG	3 cut(s)	352, 490, 538
TseFI	GTSAC	1 cut(s)	45
TseI	GCWGC	2 cut(s)	437, 561
Tsp45I	GTSAC	1 cut(s)	45
TspDTI	ATGAA	3 cut(s)	257, 469, 702
TspGWI	ACGGA	1 cut(s)	471
TspRI	CASTG	3 cut(s)	352, 490, 538
XapI	RAATTY	2 cut(s)	119, 689
XcmI	CCANNNNNNNNNTGG	1 cut(s)	159
XmiI	GTMKAC	1 cut(s)	654
XspI	CTAG	1 cut(s)	587
Zsp2I	ATGCAT	1 cut(s)	618

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.