Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0008160

Physical Location & Seq

Genomic Coordinates Forward (+)

14492814 .. 14493137

Gene Structure 324 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0162400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGGTGCTGTTCCCAAGAGGCACATTTGGGGTGGCTCCGGTGGTTCTTCCAGGTCCATGTAAGGGACCAATGGAGTTGGAAATTCAGGGTACCCTACAGGCTTCTAAGGAGGTCAAAGATTTCATTGATATTGACCATTGGATCACCATAAAATACGTTCACCGCTTGAGGATTATTAGTGGTGGAACCCTAGATGGCCTCGGAGCCGATGGTTGGGGATATAATGACTGCCAAAAAATCCAGGCCGTTGCAACTTGCAAGCAAATCCGTGCTGTAAGTGCTTCTTACACTGCTGGCTTCAATTTTTCCTTATTCATAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009555 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010152 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0021700 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048229 GO:0048518 GO:0048583 GO:0048584 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0080134 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701 GO:1902584 GO:2000070

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7 Pkinase

Protein Analysis

107

Amino Acids

11.72

Weight (kDa)

8.52

Isoelectric Point (pI)

14.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_28	PF00295	4 - 81	1.8e-07	Glycosyl hydrolases family 28

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0008160)

Species	Orthologous Gene IDs
malus_domestica	MD07G1063200.v1.1
pyrus_communis	pycom02g21820 pycom02g21840
rosa_chinensis	RchiOBHm_Chr3g0470181
rosa_laevigata	RLG00000008106 RLG00000029152 RLG00000031580 RLG00000034936
rosa_multiflora	Rmu_co8301435.1_g000001 Rmu_co8456623.1_g000001 Rmu_sc0002799.1_g000014 Rmu_sc0014039.1_g000005
rosa_roxburghii	Rroxscaffold_3G00272930
rosa_rugosa	Rorug02G0162400 Rorug04G0088700
rosa_samantha	Rh1AG124000 Rh2BG466300 Rh3BG244000 Rh3CG171600 Rh4AG140600 Rh5BG342900 Rh5CG369900 Rh6AG182300 Rh7BG390200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	89
AccB1I	GGYRCC	1 cut(s)	89
AciI	CCGC	1 cut(s)	163
AclWI	GGATC	1 cut(s)	149
AcsI	RAATTY	1 cut(s)	81
AfaI	GTAC	1 cut(s)	91
AfiI	CCNNNNNNNGG	2 cut(s)	62, 213
AgsI	TTSAA	1 cut(s)	301
AjnI	CCWGG	2 cut(s)	49, 240
AlwI	GGATC	1 cut(s)	149
AoxI	GGCC	2 cut(s)	196, 243
ApoI	RAATTY	1 cut(s)	81
Asp718I	GGTACC	1 cut(s)	89
AspS9I	GGNCC	2 cut(s)	53, 65
AsuHPI	GGTGA	2 cut(s)	136, 152
AvaII	GGWCC	2 cut(s)	53, 65
BanI	GGYRCC	1 cut(s)	89
BccI	CCATC	2 cut(s)	188, 203
BceAI	ACGGC	1 cut(s)	230
BciT130I	CCWGG	2 cut(s)	51, 242
BfaI	CTAG	1 cut(s)	191
BfmI	CTRYAG	1 cut(s)	95
Bme1390I	CCNGG	2 cut(s)	51, 242
Bme18I	GGWCC	2 cut(s)	53, 65
BmgT120I	GGNCC	2 cut(s)	53, 65
BmiI	GGNNCC	5 cut(s)	36, 66, 91, 187, 205
BmrFI	CCNGG	2 cut(s)	51, 242
BpuEI	CTTGAG	1 cut(s)	187
BsaJI	CCNNGG	1 cut(s)	199
BsaWI	WCCGGW	1 cut(s)	37
Bsc4I	CCNNNNNNNGG	2 cut(s)	62, 213
BseBI	CCWGG	2 cut(s)	51, 242
BseDI	CCNNGG	1 cut(s)	199
BseLI	CCNNNNNNNGG	2 cut(s)	62, 213
BshFI	GGCC	2 cut(s)	198, 245
BshNI	GGYRCC	1 cut(s)	89
BsiSI	CCGG	1 cut(s)	38
BslFI	GGGAC	1 cut(s)	78
BslI	CCNNNNNNNGG	2 cut(s)	62, 213
BsmFI	GGGAC	1 cut(s)	78
BsnI	GGCC	2 cut(s)	198, 245
Bsp143I	GATC	1 cut(s)	141
BspACI	CCGC	1 cut(s)	163
BspANI	GGCC	2 cut(s)	198, 245
BspLI	GGNNCC	5 cut(s)	36, 66, 91, 187, 205
BspPI	GGATC	1 cut(s)	149
BspT107I	GGYRCC	1 cut(s)	89
BssECI	CCNNGG	1 cut(s)	199
BssMI	GATC	1 cut(s)	141
Bst2UI	CCWGG	2 cut(s)	51, 242
BstC8I	GCNNGC	2 cut(s)	260, 295
BstDEI	CTNAG	1 cut(s)	105
BstKTI	GATC	1 cut(s)	144
BstMBI	GATC	1 cut(s)	141
BstMWI	GCNNNNNNNGC	1 cut(s)	278
BstNI	CCWGG	2 cut(s)	51, 242
BstSCI	CCNGG	2 cut(s)	49, 240
BstSFI	CTRYAG	1 cut(s)	95
BsuRI	GGCC	2 cut(s)	198, 245
BtsI	GCAGTG	1 cut(s)	288
BtsIMutI	CAGTG	1 cut(s)	288
Cac8I	GCNNGC	2 cut(s)	260, 295
Cfr13I	GGNCC	2 cut(s)	53, 65
Csp6I	GTAC	1 cut(s)	90
CviAII	CATG	1 cut(s)	57
CviJI	RGCY	6 cut(s)	35, 101, 198, 206, 245, 297
CviKI_1	RGCY	6 cut(s)	35, 101, 198, 206, 245, 297
CviQI	GTAC	1 cut(s)	90
DdeI	CTNAG	1 cut(s)	105
DpnI	GATC	1 cut(s)	143
DpnII	GATC	1 cut(s)	141
Eco47I	GGWCC	2 cut(s)	53, 65
EcoRII	CCWGG	2 cut(s)	49, 240
FaeI	CATG	1 cut(s)	60
FaiI	YATR	4 cut(s)	58, 149, 222, 317
FalI	AAGNNNNNCTT	2 cut(s)	268, 300
FaqI	GGGAC	1 cut(s)	78
FatI	CATG	1 cut(s)	56
FspBI	CTAG	1 cut(s)	191
HaeIII	GGCC	2 cut(s)	198, 245
HapII	CCGG	1 cut(s)	38
Hin1II	CATG	1 cut(s)	60
HpaII	CCGG	1 cut(s)	38
HphI	GGTGA	2 cut(s)	136, 152
Hpy166II	GTNNAC	1 cut(s)	160
Hpy188I	TCNGA	1 cut(s)	203
Hpy8I	GTNNAC	1 cut(s)	160
HpyCH4IV	ACGT	1 cut(s)	156
HpyCH4V	TGCA	2 cut(s)	251, 258
HpyF10VI	GCNNNNNNNGC	1 cut(s)	278
HpyF3I	CTNAG	1 cut(s)	105
HpySE526I	ACGT	1 cut(s)	156
Hsp92II	CATG	1 cut(s)	60
KpnI	GGTACC	1 cut(s)	93
Kzo9I	GATC	1 cut(s)	141
LmnI	GCTCC	2 cut(s)	40, 203
LpnPI	CCDG	8 cut(s)	36, 51, 63, 71, 83, 227, 254, 279
MaeI	CTAG	1 cut(s)	191
MaeII	ACGT	1 cut(s)	156
MalI	GATC	1 cut(s)	143
MboI	GATC	1 cut(s)	141
MboII	GAAGA	1 cut(s)	38
MluCI	AATT	2 cut(s)	81, 301
MmeI	TCCRAC	1 cut(s)	57
MnlI	CCTC	4 cut(s)	11, 103, 162, 209
MspI	CCGG	1 cut(s)	38
MspR9I	CCNGG	2 cut(s)	51, 242
MvaI	CCWGG	2 cut(s)	51, 242
MwoI	GCNNNNNNNGC	1 cut(s)	278
NdeII	GATC	1 cut(s)	141
NlaIII	CATG	1 cut(s)	60
NlaIV	GGNNCC	5 cut(s)	36, 66, 91, 187, 205
Psp6I	CCWGG	2 cut(s)	49, 240
PspGI	CCWGG	2 cut(s)	49, 240
PspN4I	GGNNCC	5 cut(s)	36, 66, 91, 187, 205
PspPI	GGNCC	2 cut(s)	53, 65
RsaI	GTAC	1 cut(s)	91
RsaNI	GTAC	1 cut(s)	90
Sau3AI	GATC	1 cut(s)	141
Sau96I	GGNCC	2 cut(s)	53, 65
ScrFI	CCNGG	2 cut(s)	51, 242
SetI	ASST	3 cut(s)	55, 114, 159
SfcI	CTRYAG	1 cut(s)	95
SinI	GGWCC	2 cut(s)	53, 65
SmlI	CTYRAG	1 cut(s)	166
SmoI	CTYRAG	1 cut(s)	166
Sse9I	AATT	2 cut(s)	81, 301
SsiI	CCGC	1 cut(s)	163
SspMI	CTAG	1 cut(s)	191
StyD4I	CCNGG	2 cut(s)	49, 240
TaiI	ACGT	1 cut(s)	159
TasI	AATT	2 cut(s)	81, 301
TscAI	CASTG	1 cut(s)	295
TspDTI	ATGAA	2 cut(s)	112, 304
TspGWI	ACGGA	1 cut(s)	257
TspRI	CASTG	1 cut(s)	295
VpaK11BI	GGWCC	2 cut(s)	53, 65
XapI	RAATTY	1 cut(s)	81
XspI	CTAG	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.