Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0008160

Physical Location & Seq

Genomic Coordinates Reverse (-)

65852277 .. 65852759

Gene Structure 483 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG466300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGATTGATGCAGATGATAGTGGAAGCATCACATTTGAGGAGCTGAAGGAGGGTTTGAGGAAAGTGGGGTCTGAGCTAATGGAGAGTGAGATCAAGGATCTAATGGAGGCAGCTGACATTGACAACAATGGAACAATCGACTATGGTGAGTTCCTTGCAGCAACTGTGCACTTGAATAAGTTGGAGAGGGAGGAGAATCTGCTGTCAGCATTCTCTTTTTTCGACAAAGATGGAAGCGGGTACATCACCATTGATGAGCTCACACAAGCCTGTGTTGAGTTTGGATTGGGGGAGGTGCATCTGGAGGATATGATCAGAGAAATTGATCAGGACAATGATGGGCAGATCGATTATGGAGAATTTGCTGCAATGATGAGGAAGGGGAATGGAGGCATTGGAAGGAGAACTATGACCAGAACTATAAACTTGGGGGATGCTTTTGGCCTGGGAGTGGATACCAATGGAGTCCAACTAACTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 Pkinase

Protein Analysis

160

Amino Acids

17.61

Weight (kDa)

4.16

Isoelectric Point (pI)

19.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	1 - 54	2.2e-10	EF-hand domain pair
EF-hand_8	PF13833	7 - 57	3e-09	EF-hand domain pair
EF-hand_7	PF13499	64 - 126	2.3e-14	EF-hand domain pair
EF-hand_6	PF13405	67 - 94	5e-07	EF-hand domain
EF-hand_1	PF00036	69 - 91	1.7e-06	EF hand domain
EF-hand_1	PF00036	101 - 127	1.2e-08	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0008160)

Species	Orthologous Gene IDs
malus_domestica	MD07G1063200.v1.1
pyrus_communis	pycom02g21820 pycom02g21840
rosa_chinensis	RchiOBHm_Chr3g0470181
rosa_laevigata	RLG00000008106 RLG00000029152 RLG00000031580 RLG00000034936
rosa_multiflora	Rmu_co8301435.1_g000001 Rmu_co8456623.1_g000001 Rmu_sc0002799.1_g000014 Rmu_sc0014039.1_g000005
rosa_roxburghii	Rroxscaffold_3G00272930
rosa_rugosa	Rorug02G0162400 Rorug04G0088700
rosa_samantha	Rh1AG124000 Rh2BG466300 Rh3BG244000 Rh3CG171600 Rh4AG140600 Rh5BG342900 Rh5CG369900 Rh6AG182300 Rh7BG390200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	237
AclWI	GGATC	1 cut(s)	105
AcsI	RAATTY	1 cut(s)	359
AcuI	CTGAAG	1 cut(s)	65
AfaI	GTAC	1 cut(s)	242
AfiI	CCNNNNNNNGG	1 cut(s)	451
AgsI	TTSAA	1 cut(s)	175
AjnI	CCWGG	1 cut(s)	444
AluBI	AGCT	4 cut(s)	43, 76, 113, 259
AluI	AGCT	4 cut(s)	43, 76, 113, 259
Alw21I	GWGCWC	2 cut(s)	171, 261
Alw44I	GTGCAC	1 cut(s)	167
AlwI	GGATC	1 cut(s)	105
AlwNI	CAGNNNCTG	1 cut(s)	164
AoxI	GGCC	1 cut(s)	442
ApaLI	GTGCAC	1 cut(s)	167
ApeKI	GCWGC	3 cut(s)	110, 158, 365
ApoI	RAATTY	1 cut(s)	359
AsuHPI	GGTGA	2 cut(s)	158, 238
BaeGI	GKGCMC	1 cut(s)	171
BanII	GRGCYC	1 cut(s)	261
Bbv12I	GWGCWC	2 cut(s)	171, 261
BbvI	GCAGC	3 cut(s)	122, 170, 352
BccI	CCATC	2 cut(s)	224, 332
BciT130I	CCWGG	1 cut(s)	446
BciVI	GTATCC	1 cut(s)	448
BclI	TGATCA	2 cut(s)	312, 325
BfuI	GTATCC	1 cut(s)	448
BisI	GCNGC	3 cut(s)	111, 159, 366
BlsI	GCNGC	3 cut(s)	112, 160, 367
Bme1390I	CCNGG	1 cut(s)	446
BmrFI	CCNGG	1 cut(s)	446
BmsI	GCATC	3 cut(s)	36, 307, 424
BpmI	CTGGAG	1 cut(s)	323
Bsa29I	ATCGAT	1 cut(s)	348
BsaJI	CCNNGG	1 cut(s)	445
Bsc4I	CCNNNNNNNGG	1 cut(s)	451
Bse3DI	GCAATG	1 cut(s)	375
BseBI	CCWGG	1 cut(s)	446
BseCI	ATCGAT	1 cut(s)	348
BseDI	CCNNGG	1 cut(s)	445
BseGI	GGATG	1 cut(s)	439
BseLI	CCNNNNNNNGG	1 cut(s)	451
BseMI	GCAATG	1 cut(s)	375
BseMII	CTCAG	1 cut(s)	63
BseRI	GAGGAG	2 cut(s)	53, 206
BseSI	GKGCMC	1 cut(s)	171
BseXI	GCAGC	3 cut(s)	122, 170, 352
BshFI	GGCC	1 cut(s)	444
BshVI	ATCGAT	1 cut(s)	348
BsiHKAI	GWGCWC	2 cut(s)	171, 261
BslI	CCNNNNNNNGG	1 cut(s)	451
BsmI	GAATGC	1 cut(s)	209
BsnI	GGCC	1 cut(s)	444
Bsp1286I	GDGCHC	2 cut(s)	171, 261
Bsp143I	GATC	5 cut(s)	90, 97, 312, 325, 345
BspACI	CCGC	1 cut(s)	237
BspANI	GGCC	1 cut(s)	444
BspCNI	CTCAG	1 cut(s)	64
BspDI	ATCGAT	1 cut(s)	348
BspPI	GGATC	1 cut(s)	105
BsrDI	GCAATG	1 cut(s)	375
BssECI	CCNNGG	1 cut(s)	445
BssMI	GATC	5 cut(s)	90, 97, 312, 325, 345
Bst2UI	CCWGG	1 cut(s)	446
Bst4CI	ACNGT	1 cut(s)	166
BstDEI	CTNAG	1 cut(s)	72
BstF5I	GGATG	1 cut(s)	439
BstKTI	GATC	5 cut(s)	93, 100, 315, 328, 348
BstMBI	GATC	5 cut(s)	90, 97, 312, 325, 345
BstNI	CCWGG	1 cut(s)	446
BstSCI	CCNGG	1 cut(s)	444
BstSLI	GKGCMC	1 cut(s)	171
BstV1I	GCAGC	3 cut(s)	122, 170, 352
BstX2I	RGATCY	1 cut(s)	97
BstYI	RGATCY	1 cut(s)	97
Bsu15I	ATCGAT	1 cut(s)	348
BsuI	GTATCC	1 cut(s)	448
BsuRI	GGCC	1 cut(s)	444
BsuTUI	ATCGAT	1 cut(s)	348
BtsCI	GGATG	1 cut(s)	439
CaiI	CAGNNNCTG	1 cut(s)	164
ClaI	ATCGAT	1 cut(s)	348
Csp6I	GTAC	1 cut(s)	241
CviJI	RGCY	6 cut(s)	43, 76, 113, 259, 269, 444
CviKI_1	RGCY	6 cut(s)	43, 76, 113, 259, 269, 444
CviQI	GTAC	1 cut(s)	241
DdeI	CTNAG	1 cut(s)	72
DpnI	GATC	5 cut(s)	92, 99, 314, 327, 347
DpnII	GATC	5 cut(s)	90, 97, 312, 325, 345
Ecl136II	GAGCTC	1 cut(s)	259
Eco24I	GRGCYC	1 cut(s)	261
Eco53kI	GAGCTC	1 cut(s)	259
Eco57I	CTGAAG	1 cut(s)	65
EcoICRI	GAGCTC	1 cut(s)	259
EcoRII	CCWGG	1 cut(s)	444
EcoT38I	GRGCYC	1 cut(s)	261
FaiI	YATR	5 cut(s)	144, 311, 354, 410, 422
FauI	CCCGC	1 cut(s)	230
FbaI	TGATCA	2 cut(s)	312, 325
Fnu4HI	GCNGC	3 cut(s)	111, 159, 366
FokI	GGATG	1 cut(s)	446
FriOI	GRGCYC	1 cut(s)	261
Fsp4HI	GCNGC	3 cut(s)	111, 159, 366
GluI	GCNGC	3 cut(s)	111, 159, 366
GsuI	CTGGAG	1 cut(s)	323
HaeIII	GGCC	1 cut(s)	444
HinfI	GANTC	2 cut(s)	196, 465
HphI	GGTGA	2 cut(s)	158, 238
Hpy166II	GTNNAC	1 cut(s)	169
Hpy188I	TCNGA	2 cut(s)	73, 317
Hpy188III	TCNNGA	2 cut(s)	302, 329
Hpy8I	GTNNAC	1 cut(s)	169
HpyAV	CCTTC	3 cut(s)	40, 373, 393
HpyCH4III	ACNGT	1 cut(s)	166
HpyCH4V	TGCA	5 cut(s)	11, 158, 169, 298, 368
HpyF3I	CTNAG	1 cut(s)	72
Ksp22I	TGATCA	2 cut(s)	312, 325
Kzo9I	GATC	5 cut(s)	90, 97, 312, 325, 345
LmnI	GCTCC	1 cut(s)	40
LpnPI	CCDG	6 cut(s)	283, 287, 314, 427, 431, 458
Lsp1109I	GCAGC	3 cut(s)	122, 170, 352
LweI	GCATC	3 cut(s)	36, 307, 424
MalI	GATC	5 cut(s)	92, 99, 314, 327, 347
MboI	GATC	5 cut(s)	90, 97, 312, 325, 345
MflI	RGATCY	1 cut(s)	97
MhlI	GDGCHC	2 cut(s)	171, 261
MluCI	AATT	2 cut(s)	321, 359
MlyI	GAGTC	1 cut(s)	474
MmeI	TCCRAC	1 cut(s)	162
MspA1I	CMGCKG	1 cut(s)	113
MspR9I	CCNGG	1 cut(s)	446
Mva1269I	GAATGC	1 cut(s)	209
MvaI	CCWGG	1 cut(s)	446
NdeII	GATC	5 cut(s)	90, 97, 312, 325, 345
PctI	GAATGC	1 cut(s)	209
PfeI	GAWTC	1 cut(s)	196
PkrI	GCNGC	3 cut(s)	112, 160, 367
PleI	GAGTC	1 cut(s)	473
PpsI	GAGTC	1 cut(s)	473
Psp124BI	GAGCTC	1 cut(s)	261
Psp6I	CCWGG	1 cut(s)	444
PspGI	CCWGG	1 cut(s)	444
PstNI	CAGNNNCTG	1 cut(s)	164
PsuI	RGATCY	1 cut(s)	97
PvuII	CAGCTG	1 cut(s)	113
RsaI	GTAC	1 cut(s)	242
RsaNI	GTAC	1 cut(s)	241
SacI	GAGCTC	1 cut(s)	261
SatI	GCNGC	3 cut(s)	111, 159, 366
Sau3AI	GATC	5 cut(s)	90, 97, 312, 325, 345
SchI	GAGTC	1 cut(s)	474
ScrFI	CCNGG	1 cut(s)	446
SduI	GDGCHC	2 cut(s)	171, 261
SetI	ASST	5 cut(s)	45, 78, 115, 261, 297
SfaNI	GCATC	3 cut(s)	36, 307, 424
Sse9I	AATT	2 cut(s)	321, 359
SsiI	CCGC	1 cut(s)	237
SstI	GAGCTC	1 cut(s)	261
StyD4I	CCNGG	1 cut(s)	444
TaaI	ACNGT	1 cut(s)	166
TaqI	TCGA	3 cut(s)	138, 222, 348
TasI	AATT	2 cut(s)	321, 359
TfiI	GAWTC	1 cut(s)	196
TseI	GCWGC	3 cut(s)	110, 158, 365
VneI	GTGCAC	1 cut(s)	167
XapI	RAATTY	1 cut(s)	359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.