Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0008160

Physical Location & Seq

Genomic Coordinates Reverse (-)

23117791 .. 23124246

Gene Structure 6456 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG244000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGGGAACACATGTGTCGGACCAAATCTCGGCAATGGTTTCATGCAATCCGTTACGGATGCCATTTGGCGAACCCGGCCACCGGAGGACCGGCTTCCTCCTCCAAATGAAGAAGGCAGTAGCAAAAATGACTCAAATTCGAATCCTGGTCCGTCATCCAAAGAAAGCCTGTCGGAAGAGGAAATAGCAGGGCTGAAGGAAATGTTCAAGATGATAGACACAGATAATAGTGGGCACATCACCCTTGAGGAACTAAAGACTGGTTTGGAAAGAGTGGGTGCTGATCTCAAGGATTCTGAAATCACTTGGTTAATGCAATCGGCGGATGTAGACAACAGTGGTACCATAGACTATGGTGAGTTCATAGCAGCGATGCTACACCTGAACAAGGTCCAGAAGGAAGATCACCTGTTTGCAGCATTCTCATACTTTGACAAAGATGGAAGTGGGTACATTACTCGAGATGAGCTGCAACAGGCCTGTGAGAAGTTTGGTTTACAAGATGTGCAATTAGATGACATAATACGTGAAGTCGACCAGGATAATGATGGACGCATTGATTATAGTGAATTCGTGGCCATGATGGAAGACACCGGTTTTGGCAAGGGATTACAAACGAACATGAGTAGTAGGCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 Pkinase

Protein Analysis

212

Amino Acids

23.57

Weight (kDa)

4.35

Isoelectric Point (pI)

42.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	64 - 125	1.5e-13	EF-hand domain pair
EF-hand_1	PF00036	65 - 91	4.2e-08	EF hand domain
EF-hand_6	PF13405	65 - 93	2.5e-07	EF-hand domain
EF-hand_5	PF13202	65 - 87	2.6e-06	EF hand
EF-hand_9	PF14658	67 - 125	9.2e-06	EF-hand domain
EF-hand_7	PF13499	134 - 195	1.1e-16	EF-hand domain pair
EF-hand_1	PF00036	138 - 163	2.6e-07	EF hand domain
EF-hand_6	PF13405	138 - 165	4e-08	EF-hand domain
EF-hand_8	PF13833	150 - 197	1e-08	EF-hand domain pair
EF-hand_1	PF00036	171 - 197	1.7e-08	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0008160)

Species	Orthologous Gene IDs
malus_domestica	MD07G1063200.v1.1
pyrus_communis	pycom02g21820 pycom02g21840
rosa_chinensis	RchiOBHm_Chr3g0470181
rosa_laevigata	RLG00000008106 RLG00000029152 RLG00000031580 RLG00000034936
rosa_multiflora	Rmu_co8301435.1_g000001 Rmu_co8456623.1_g000001 Rmu_sc0002799.1_g000014 Rmu_sc0014039.1_g000005
rosa_roxburghii	Rroxscaffold_3G00272930
rosa_rugosa	Rorug02G0162400 Rorug04G0088700
rosa_samantha	Rh1AG124000 Rh2BG466300 Rh3BG244000 Rh3CG171600 Rh4AG140600 Rh5BG342900 Rh5CG369900 Rh6AG182300 Rh7BG390200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	341
AccB1I	GGYRCC	1 cut(s)	341
AccI	GTMKAC	2 cut(s)	330, 534
AciI	CCGC	1 cut(s)	323
AcoI	YGGCCR	2 cut(s)	77, 576
AcsI	RAATTY	2 cut(s)	136, 569
AcuI	CTGAAG	1 cut(s)	215
AfaI	GTAC	2 cut(s)	343, 452
AfiI	CCNNNNNNNGG	3 cut(s)	29, 82, 388
AflIII	ACRYGT	1 cut(s)	11
AgeI	ACCGGT	1 cut(s)	593
AgsI	TTSAA	1 cut(s)	208
AjnI	CCWGG	2 cut(s)	145, 537
AluBI	AGCT	1 cut(s)	469
AluI	AGCT	1 cut(s)	469
Ama87I	CYCGRG	1 cut(s)	459
AoxI	GGCC	3 cut(s)	77, 477, 576
ApeKI	GCWGC	3 cut(s)	368, 416, 469
ApoI	RAATTY	2 cut(s)	136, 569
ArsI	GACNNNNNNTTYG	2 cut(s)	581, 613
AsiGI	ACCGGT	1 cut(s)	593
Asp718I	GGTACC	1 cut(s)	341
AspS9I	GGNCC	4 cut(s)	20, 88, 149, 391
AsuC2I	CCSGG	1 cut(s)	76
AsuHPI	GGTGA	3 cut(s)	232, 368, 398
AsuII	TTCGAA	1 cut(s)	140
AvaI	CYCGRG	1 cut(s)	459
AvaII	GGWCC	4 cut(s)	20, 88, 149, 391
BaeGI	GKGCMC	1 cut(s)	237
BaeI	ACNNNNGTAYC	2 cut(s)	325, 358
BalI	TGGCCA	1 cut(s)	578
BanI	GGYRCC	1 cut(s)	341
BbsI	GAAGAC	1 cut(s)	594
BbvI	GCAGC	3 cut(s)	380, 428, 456
BccI	CCATC	3 cut(s)	434, 542, 577
BciT130I	CCWGG	2 cut(s)	147, 539
BcnI	CCSGG	1 cut(s)	76
BisI	GCNGC	3 cut(s)	369, 417, 470
BlsI	GCNGC	3 cut(s)	370, 418, 471
Bme1390I	CCNGG	3 cut(s)	76, 147, 539
Bme18I	GGWCC	4 cut(s)	20, 88, 149, 391
BmeT110I	CYCGRG	1 cut(s)	459
BmgT120I	GGNCC	4 cut(s)	20, 88, 149, 391
BmiI	GGNNCC	1 cut(s)	343
BmrFI	CCNGG	3 cut(s)	76, 147, 539
BmsI	GCATC	2 cut(s)	49, 363
BpiI	GAAGAC	1 cut(s)	594
Bpu14I	TTCGAA	1 cut(s)	140
BpuEI	CTTGAG	2 cut(s)	266, 272
BpuMI	CCSGG	1 cut(s)	76
BsaAI	YACGTR	1 cut(s)	527
BsaWI	WCCGGW	2 cut(s)	82, 593
Bsc4I	CCNNNNNNNGG	3 cut(s)	29, 82, 388
Bse118I	RCCGGY	2 cut(s)	90, 593
Bse1I	ACTGG	1 cut(s)	265
Bse3DI	GCAATG	1 cut(s)	40
BseBI	CCWGG	2 cut(s)	147, 539
BseGI	GGATG	3 cut(s)	64, 155, 331
BseLI	CCNNNNNNNGG	3 cut(s)	29, 82, 388
BseMI	GCAATG	1 cut(s)	40
BseNI	ACTGG	1 cut(s)	265
BseRI	GAGGAG	1 cut(s)	90
BseSI	GKGCMC	1 cut(s)	237
BseXI	GCAGC	3 cut(s)	380, 428, 456
BshFI	GGCC	3 cut(s)	79, 479, 578
BshNI	GGYRCC	1 cut(s)	341
BshTI	ACCGGT	1 cut(s)	593
BsiHKCI	CYCGRG	1 cut(s)	459
BsiSI	CCGG	4 cut(s)	76, 83, 91, 594
BslI	CCNNNNNNNGG	3 cut(s)	29, 82, 388
BsmI	GAATGC	1 cut(s)	419
BsnI	GGCC	3 cut(s)	79, 479, 578
BsoBI	CYCGRG	1 cut(s)	459
Bsp119I	TTCGAA	1 cut(s)	140
Bsp1286I	GDGCHC	1 cut(s)	237
Bsp143I	GATC	2 cut(s)	283, 403
BspACI	CCGC	1 cut(s)	323
BspANI	GGCC	3 cut(s)	79, 479, 578
BspLI	GGNNCC	1 cut(s)	343
BspT104I	TTCGAA	1 cut(s)	140
BspT107I	GGYRCC	1 cut(s)	341
BsrDI	GCAATG	1 cut(s)	40
BsrFI	RCCGGY	2 cut(s)	90, 593
BsrI	ACTGG	1 cut(s)	265
BssAI	RCCGGY	2 cut(s)	90, 593
BssMI	GATC	2 cut(s)	283, 403
Bst2UI	CCWGG	2 cut(s)	147, 539
Bst4CI	ACNGT	1 cut(s)	338
Bst6I	CTCTTC	1 cut(s)	171
BstBAI	YACGTR	1 cut(s)	527
BstBI	TTCGAA	1 cut(s)	140
BstENI	CCTNNNNNAGG	1 cut(s)	386
BstF5I	GGATG	3 cut(s)	64, 155, 331
BstKTI	GATC	2 cut(s)	286, 406
BstMBI	GATC	2 cut(s)	283, 403
BstMWI	GCNNNNNNNGC	1 cut(s)	76
BstNI	CCWGG	2 cut(s)	147, 539
BstNSI	RCATGY	1 cut(s)	15
BstSCI	CCNGG	3 cut(s)	74, 145, 537
BstSLI	GKGCMC	1 cut(s)	237
BstV1I	GCAGC	3 cut(s)	380, 428, 456
BstV2I	GAAGAC	1 cut(s)	594
BsuRI	GGCC	3 cut(s)	79, 479, 578
BtgZI	GCGATG	1 cut(s)	386
BtsCI	GGATG	3 cut(s)	64, 155, 331
BtsIMutI	CAGTG	1 cut(s)	343
Cfr10I	RCCGGY	2 cut(s)	90, 593
Cfr13I	GGNCC	4 cut(s)	20, 88, 149, 391
CseI	GACGC	1 cut(s)	561
Csp6I	GTAC	2 cut(s)	342, 451
CspAI	ACCGGT	1 cut(s)	593
CviAII	CATG	4 cut(s)	12, 43, 580, 622
CviJI	RGCY	7 cut(s)	79, 94, 168, 193, 469, 479, 578
CviKI_1	RGCY	7 cut(s)	79, 94, 168, 193, 469, 479, 578
CviQI	GTAC	2 cut(s)	342, 451
DpnI	GATC	2 cut(s)	285, 405
DpnII	GATC	2 cut(s)	283, 403
EaeI	YGGCCR	2 cut(s)	77, 576
Eam1104I	CTCTTC	1 cut(s)	171
EarI	CTCTTC	1 cut(s)	171
EciI	GGCGGA	1 cut(s)	338
Eco147I	AGGCCT	1 cut(s)	479
Eco47I	GGWCC	4 cut(s)	20, 88, 149, 391
Eco57I	CTGAAG	1 cut(s)	215
Eco88I	CYCGRG	1 cut(s)	459
EcoNI	CCTNNNNNAGG	1 cut(s)	386
EcoRI	GAATTC	1 cut(s)	569
EcoRII	CCWGG	2 cut(s)	145, 537
FaeI	CATG	4 cut(s)	15, 46, 583, 625
FatI	CATG	4 cut(s)	11, 42, 579, 621
FblI	GTMKAC	2 cut(s)	330, 534
Fnu4HI	GCNGC	3 cut(s)	369, 417, 470
FokI	GGATG	3 cut(s)	71, 142, 338
Fsp4HI	GCNGC	3 cut(s)	369, 417, 470
GluI	GCNGC	3 cut(s)	369, 417, 470
HaeIII	GGCC	3 cut(s)	79, 479, 578
HapII	CCGG	4 cut(s)	76, 83, 91, 594
HgaI	GACGC	1 cut(s)	561
Hin1II	CATG	4 cut(s)	15, 46, 583, 625
HincII	GTYRAC	1 cut(s)	535
HindII	GTYRAC	1 cut(s)	535
HinfI	GANTC	3 cut(s)	131, 142, 293
HpaII	CCGG	4 cut(s)	76, 83, 91, 594
HphI	GGTGA	3 cut(s)	232, 368, 398
Hpy166II	GTNNAC	3 cut(s)	331, 497, 535
Hpy188I	TCNGA	3 cut(s)	20, 175, 298
Hpy188III	TCNNGA	3 cut(s)	208, 394, 461
Hpy8I	GTNNAC	3 cut(s)	331, 497, 535
HpyAV	CCTTC	3 cut(s)	107, 190, 391
HpyCH4III	ACNGT	1 cut(s)	338
HpyCH4IV	ACGT	1 cut(s)	526
HpyCH4V	TGCA	5 cut(s)	46, 316, 416, 472, 508
HpyF10VI	GCNNNNNNNGC	1 cut(s)	76
HpySE526I	ACGT	1 cut(s)	526
Hsp92II	CATG	4 cut(s)	15, 46, 583, 625
KpnI	GGTACC	1 cut(s)	345
Kzo9I	GATC	2 cut(s)	283, 403
Lsp1109I	GCAGC	3 cut(s)	380, 428, 456
LweI	GCATC	2 cut(s)	49, 363
MaeII	ACGT	1 cut(s)	526
MaeIII	GTNAC	1 cut(s)	52
MalI	GATC	2 cut(s)	285, 405
MboI	GATC	2 cut(s)	283, 403
MboII	GAAGA	4 cut(s)	122, 188, 413, 599
MhlI	GDGCHC	1 cut(s)	237
MlsI	TGGCCA	1 cut(s)	578
MluCI	AATT	3 cut(s)	136, 509, 569
MluNI	TGGCCA	1 cut(s)	578
MlyI	GAGTC	1 cut(s)	125
MmeI	TCCRAC	1 cut(s)	153
MnlI	CCTC	5 cut(s)	79, 108, 111, 172, 241
Mox20I	TGGCCA	1 cut(s)	578
MscI	TGGCCA	1 cut(s)	578
MseI	TTAA	1 cut(s)	311
Msp20I	TGGCCA	1 cut(s)	578
MspI	CCGG	4 cut(s)	76, 83, 91, 594
MspR9I	CCNGG	3 cut(s)	76, 147, 539
Mva1269I	GAATGC	1 cut(s)	419
MvaI	CCWGG	2 cut(s)	147, 539
MwoI	GCNNNNNNNGC	1 cut(s)	76
NciI	CCSGG	1 cut(s)	76
NdeII	GATC	2 cut(s)	283, 403
NlaIII	CATG	4 cut(s)	15, 46, 583, 625
NlaIV	GGNNCC	1 cut(s)	343
NmeAIII	GCCGAG	1 cut(s)	9
NspI	RCATGY	1 cut(s)	15
NspV	TTCGAA	1 cut(s)	140
PaeR7I	CTCGAG	1 cut(s)	459
PceI	AGGCCT	1 cut(s)	479
PciI	ACATGT	1 cut(s)	11
PctI	GAATGC	1 cut(s)	419
PfeI	GAWTC	2 cut(s)	142, 293
PinAI	ACCGGT	1 cut(s)	593
PkrI	GCNGC	3 cut(s)	370, 418, 471
PleI	GAGTC	1 cut(s)	125
PpsI	GAGTC	1 cut(s)	125
Ppu21I	YACGTR	1 cut(s)	527
PscI	ACATGT	1 cut(s)	11
Psp6I	CCWGG	2 cut(s)	145, 537
PspGI	CCWGG	2 cut(s)	145, 537
PspN4I	GGNNCC	1 cut(s)	343
PspPI	GGNCC	4 cut(s)	20, 88, 149, 391
RsaI	GTAC	2 cut(s)	343, 452
RsaNI	GTAC	2 cut(s)	342, 451
SalI	GTCGAC	1 cut(s)	533
SaqAI	TTAA	1 cut(s)	311
SatI	GCNGC	3 cut(s)	369, 417, 470
Sau3AI	GATC	2 cut(s)	283, 403
Sau96I	GGNCC	4 cut(s)	20, 88, 149, 391
SchI	GAGTC	1 cut(s)	125
ScrFI	CCNGG	3 cut(s)	76, 147, 539
SduI	GDGCHC	1 cut(s)	237
SetI	ASST	5 cut(s)	384, 393, 411, 471, 529
SfaNI	GCATC	2 cut(s)	49, 363
Sfr274I	CTCGAG	1 cut(s)	459
SfuI	TTCGAA	1 cut(s)	140
SinI	GGWCC	4 cut(s)	20, 88, 149, 391
SlaI	CTCGAG	1 cut(s)	459
SmlI	CTYRAG	3 cut(s)	245, 287, 459
SmoI	CTYRAG	3 cut(s)	245, 287, 459
Sse9I	AATT	3 cut(s)	136, 509, 569
SseBI	AGGCCT	1 cut(s)	479
SsiI	CCGC	1 cut(s)	323
StuI	AGGCCT	1 cut(s)	479
StyD4I	CCNGG	3 cut(s)	74, 145, 537
TaaI	ACNGT	1 cut(s)	338
TaiI	ACGT	1 cut(s)	529
TaqI	TCGA	3 cut(s)	140, 460, 534
TasI	AATT	3 cut(s)	136, 509, 569
TfiI	GAWTC	2 cut(s)	142, 293
Tru1I	TTAA	1 cut(s)	311
Tru9I	TTAA	1 cut(s)	311
TscAI	CASTG	1 cut(s)	343
TseI	GCWGC	3 cut(s)	368, 416, 469
TspDTI	ATGAA	3 cut(s)	31, 123, 352
TspGWI	ACGGA	3 cut(s)	40, 71, 141
TspRI	CASTG	1 cut(s)	343
VpaK11BI	GGWCC	4 cut(s)	20, 88, 149, 391
XagI	CCTNNNNNAGG	1 cut(s)	386
XapI	RAATTY	2 cut(s)	136, 569
XceI	RCATGY	1 cut(s)	15
XcmI	CCANNNNNNNNNTGG	1 cut(s)	545
XhoI	CTCGAG	1 cut(s)	459
XmiI	GTMKAC	2 cut(s)	330, 534

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.