Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0008160

Physical Location & Seq

Genomic Coordinates Reverse (-)

23119950 .. 23127109

Gene Structure 7160 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG124000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGAATTTTACCACATCATGGTCTTTGAGATTAGTATTATCATTATACAACTATAACATTGTTCCAAAGTTATCCACAAGCAACTCCCAAGGGCAACTAGCAGATGTAGATAATAGCGGAACCATTGATTATGGGGAATTTGTTGCGGCAACATTGCATTTAAACAAAATTGAGAGAGAAGATCATCTGTTTGCAGCTTTCTCCTACTTTGATAAGGATGGAAGTGGCTACATTACTCAAGATGAGCTTCAACTAGCTTGTGAGGAGTTTGGCGTAGAGGATGTTCGCCTCGAAGAAATGATAAGAGAAGTCGATCAGGATAATGATGGACGCATAGATTACAACGAGTTTGTGGCTATGATGCAAAAAGGAAATTTTGTTGGCCCGGCCAAGAAGGGCCTGCAAAGTAGCTTCAGTATTAACTTCAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005509 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005777 GO:0005778 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0031090 GO:0031903 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0042579 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0046777 GO:0046872 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0097305 GO:0097306 GO:0098588 GO:0098805 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 Pkinase

Protein Analysis

143

Amino Acids

16.24

Weight (kDa)

4.45

Isoelectric Point (pI)

31.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	60 - 122	2.5e-16	EF-hand domain pair
EF-hand_1	PF00036	64 - 88	2.1e-06	EF hand domain
EF-hand_6	PF13405	64 - 91	5.3e-07	EF-hand domain
EF-hand_1	PF00036	97 - 123	1e-09	EF hand domain
EF-hand_8	PF13833	98 - 123	1e-05	EF-hand domain pair

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0008160)

Species	Orthologous Gene IDs
malus_domestica	MD07G1063200.v1.1
pyrus_communis	pycom02g21820 pycom02g21840
rosa_chinensis	RchiOBHm_Chr3g0470181
rosa_laevigata	RLG00000008106 RLG00000029152 RLG00000031580 RLG00000034936
rosa_multiflora	Rmu_co8301435.1_g000001 Rmu_co8456623.1_g000001 Rmu_sc0002799.1_g000014 Rmu_sc0014039.1_g000005
rosa_roxburghii	Rroxscaffold_3G00272930
rosa_rugosa	Rorug02G0162400 Rorug04G0088700
rosa_samantha	Rh1AG124000 Rh2BG466300 Rh3BG244000 Rh3CG171600 Rh4AG140600 Rh5BG342900 Rh5CG369900 Rh6AG182300 Rh7BG390200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	18
AciI	CCGC	2 cut(s)	117, 146
AcoI	YGGCCR	1 cut(s)	387
AcsI	RAATTY	3 cut(s)	4, 137, 373
AcuI	CTGAAG	2 cut(s)	397, 409
AfiI	CCNNNNNNNGG	1 cut(s)	18
AgsI	TTSAA	1 cut(s)	251
AluBI	AGCT	4 cut(s)	197, 247, 257, 411
AluI	AGCT	4 cut(s)	197, 247, 257, 411
AoxI	GGCC	3 cut(s)	382, 387, 397
ApeKI	GCWGC	1 cut(s)	194
ApoI	RAATTY	3 cut(s)	4, 137, 373
AspS9I	GGNCC	2 cut(s)	383, 397
AsuC2I	CCSGG	1 cut(s)	386
BbvI	GCAGC	1 cut(s)	206
BccI	CCATC	2 cut(s)	212, 320
BcnI	CCSGG	1 cut(s)	386
BfaI	CTAG	2 cut(s)	98, 254
BisI	GCNGC	2 cut(s)	147, 195
BlsI	GCNGC	2 cut(s)	148, 196
Bme1390I	CCNGG	1 cut(s)	386
BmgT120I	GGNCC	2 cut(s)	383, 397
BmiI	GGNNCC	1 cut(s)	121
BmrFI	CCNGG	1 cut(s)	386
BmsI	GCATC	1 cut(s)	351
BpuEI	CTTGAG	1 cut(s)	222
BpuMI	CCSGG	1 cut(s)	386
BsaJI	CCNNGG	1 cut(s)	88
Bsc4I	CCNNNNNNNGG	1 cut(s)	18
Bse3DI	GCAATG	1 cut(s)	152
BseDI	CCNNGG	1 cut(s)	88
BseGI	GGATG	2 cut(s)	223, 286
BseLI	CCNNNNNNNGG	1 cut(s)	18
BseMI	GCAATG	1 cut(s)	152
BseRI	GAGGAG	1 cut(s)	278
BseXI	GCAGC	1 cut(s)	206
BshFI	GGCC	3 cut(s)	384, 389, 399
BsiSI	CCGG	1 cut(s)	386
BslI	CCNNNNNNNGG	1 cut(s)	18
BsnI	GGCC	3 cut(s)	384, 389, 399
Bsp143I	GATC	2 cut(s)	181, 313
BspACI	CCGC	2 cut(s)	117, 146
BspANI	GGCC	3 cut(s)	384, 389, 399
BspLI	GGNNCC	1 cut(s)	121
BsrDI	GCAATG	1 cut(s)	152
BssECI	CCNNGG	1 cut(s)	88
BssMI	GATC	2 cut(s)	181, 313
BssT1I	CCWWGG	1 cut(s)	88
BstC8I	GCNNGC	1 cut(s)	401
BstF5I	GGATG	2 cut(s)	223, 286
BstKTI	GATC	2 cut(s)	184, 316
BstMBI	GATC	2 cut(s)	181, 313
BstSCI	CCNGG	1 cut(s)	384
BstV1I	GCAGC	1 cut(s)	206
BsuRI	GGCC	3 cut(s)	384, 389, 399
BtsCI	GGATG	2 cut(s)	223, 286
Cac8I	GCNNGC	1 cut(s)	401
Cfr13I	GGNCC	2 cut(s)	383, 397
CseI	GACGC	1 cut(s)	339
CviAII	CATG	1 cut(s)	18
CviJI	RGCY	9 cut(s)	197, 228, 247, 257, 356, 384, 389, 399, 411
CviKI_1	RGCY	9 cut(s)	197, 228, 247, 257, 356, 384, 389, 399, 411
DpnI	GATC	2 cut(s)	183, 315
DpnII	GATC	2 cut(s)	181, 313
DraI	TTTAAA	1 cut(s)	162
EaeI	YGGCCR	1 cut(s)	387
Eco130I	CCWWGG	1 cut(s)	88
Eco57I	CTGAAG	2 cut(s)	397, 409
EcoO109I	RGGNCCY	1 cut(s)	397
EcoT14I	CCWWGG	1 cut(s)	88
ErhI	CCWWGG	1 cut(s)	88
FaeI	CATG	1 cut(s)	21
FaiI	YATR	6 cut(s)	19, 46, 54, 132, 335, 359
FalI	AAGNNNNNCTT	2 cut(s)	231, 263
FatI	CATG	1 cut(s)	17
Fnu4HI	GCNGC	2 cut(s)	147, 195
FokI	GGATG	2 cut(s)	230, 293
Fsp4HI	GCNGC	2 cut(s)	147, 195
FspBI	CTAG	2 cut(s)	98, 254
GluI	GCNGC	2 cut(s)	147, 195
HaeIII	GGCC	3 cut(s)	384, 389, 399
HapII	CCGG	1 cut(s)	386
HgaI	GACGC	1 cut(s)	339
Hin1II	CATG	1 cut(s)	21
HpaII	CCGG	1 cut(s)	386
Hpy188I	TCNGA	1 cut(s)	428
Hpy188III	TCNNGA	2 cut(s)	239, 317
HpyAV	CCTTC	1 cut(s)	388
HpyCH4V	TGCA	4 cut(s)	157, 194, 364, 403
Hsp92II	CATG	1 cut(s)	21
Kzo9I	GATC	2 cut(s)	181, 313
LpnPI	CCDG	3 cut(s)	302, 399, 413
Lsp1109I	GCAGC	1 cut(s)	206
LweI	GCATC	1 cut(s)	351
MaeI	CTAG	2 cut(s)	98, 254
MalI	GATC	2 cut(s)	183, 315
MboI	GATC	2 cut(s)	181, 313
MboII	GAAGA	2 cut(s)	191, 305
MluCI	AATT	4 cut(s)	4, 137, 168, 373
MnlI	CCTC	3 cut(s)	256, 271, 299
MseI	TTAA	2 cut(s)	161, 420
MspI	CCGG	1 cut(s)	386
MspR9I	CCNGG	1 cut(s)	386
NciI	CCSGG	1 cut(s)	386
NdeII	GATC	2 cut(s)	181, 313
NlaIII	CATG	1 cut(s)	21
NlaIV	GGNNCC	1 cut(s)	121
PflMI	CCANNNNNTGG	1 cut(s)	18
PkrI	GCNGC	2 cut(s)	148, 196
PspN4I	GGNNCC	1 cut(s)	121
PspPI	GGNCC	2 cut(s)	383, 397
PsrI	GAACNNNNNNTAC	2 cut(s)	267, 299
SaqAI	TTAA	2 cut(s)	161, 420
SatI	GCNGC	2 cut(s)	147, 195
Sau3AI	GATC	2 cut(s)	181, 313
Sau96I	GGNCC	2 cut(s)	383, 397
ScrFI	CCNGG	1 cut(s)	386
SetI	ASST	4 cut(s)	199, 249, 259, 413
SfaNI	GCATC	1 cut(s)	351
SmlI	CTYRAG	1 cut(s)	237
SmoI	CTYRAG	1 cut(s)	237
Sse9I	AATT	4 cut(s)	4, 137, 168, 373
SsiI	CCGC	2 cut(s)	117, 146
SspMI	CTAG	2 cut(s)	98, 254
StyD4I	CCNGG	1 cut(s)	384
StyI	CCWWGG	1 cut(s)	88
TaqI	TCGA	2 cut(s)	291, 312
TasI	AATT	4 cut(s)	4, 137, 168, 373
TauI	GCSGC	1 cut(s)	149
Tru1I	TTAA	2 cut(s)	161, 420
Tru9I	TTAA	2 cut(s)	161, 420
TseI	GCWGC	1 cut(s)	194
TspDTI	ATGAA	1 cut(s)	17
Van91I	CCANNNNNTGG	1 cut(s)	18
XapI	RAATTY	3 cut(s)	4, 137, 373
XspI	CTAG	2 cut(s)	98, 254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.