Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8456623.1

Orthogroup ID

OG0008160

Physical Location & Seq

Genomic Coordinates Forward (+)

393 .. 776

Gene Structure 384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8456623.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

atggacactgataaagatggcaaagtaacttatgaggaattgaagagtggtcttcaaaaggttggttcgcagttggctgaaccagaggttaagatgctgatggaagtggttgatgttgatgggaatcaatttctggattatcgagagttcgcagcagttacaattcacttgcaaaaattggacattgatgaaaatctttggagagcatttgcattgggtatattgaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009555 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010152 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0021700 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048229 GO:0048518 GO:0048583 GO:0048584 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0080134 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701 GO:1902584 GO:2000070

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7 Pkinase

Protein Analysis

76

Amino Acids

8.64

Weight (kDa)

4.43

Isoelectric Point (pI)

17.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008160)

Species	Orthologous Gene IDs
malus_domestica	MD07G1063200.v1.1
pyrus_communis	pycom02g21820 pycom02g21840
rosa_chinensis	RchiOBHm_Chr3g0470181
rosa_laevigata	RLG00000008106 RLG00000029152 RLG00000031580 RLG00000034936
rosa_multiflora	Rmu_co8301435.1_g000001 Rmu_co8456623.1_g000001 Rmu_sc0002799.1_g000014 Rmu_sc0014039.1_g000005
rosa_roxburghii	Rroxscaffold_3G00272930
rosa_rugosa	Rorug02G0162400 Rorug04G0088700
rosa_samantha	Rh1AG124000 Rh2BG466300 Rh3BG244000 Rh3CG171600 Rh4AG140600 Rh5BG342900 Rh5CG369900 Rh6AG182300 Rh7BG390200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	3 cut(s)	43, 56, 226
ApeKI	GCWGC	1 cut(s)	152
BbsI	GAAGAC	1 cut(s)	44
BbvI	GCAGC	1 cut(s)	164
BccI	CCATC	3 cut(s)	11, 94, 113
BisI	GCNGC	1 cut(s)	153
BlsI	GCNGC	1 cut(s)	154
BmsI	GCATC	1 cut(s)	84
BpiI	GAAGAC	1 cut(s)	44
BsaBI	GATNNNNATC	2 cut(s)	123, 192
Bse8I	GATNNNNATC	2 cut(s)	123, 192
BseJI	GATNNNNATC	2 cut(s)	123, 192
BseXI	GCAGC	1 cut(s)	164
Bst6I	CTCTTC	1 cut(s)	38
BstV1I	GCAGC	1 cut(s)	164
BstV2I	GAAGAC	1 cut(s)	44
BtsIMutI	CAGTG	1 cut(s)	6
CviJI	RGCY	1 cut(s)	77
CviKI_1	RGCY	1 cut(s)	77
Eam1104I	CTCTTC	1 cut(s)	38
EarI	CTCTTC	1 cut(s)	38
FaiI	YATR	2 cut(s)	33, 221
Fnu4HI	GCNGC	1 cut(s)	153
Fsp4HI	GCNGC	1 cut(s)	153
GluI	GCNGC	1 cut(s)	153
HinfI	GANTC	1 cut(s)	124
Hpy188III	TCNNGA	2 cut(s)	134, 143
HpyCH4V	TGCA	2 cut(s)	172, 212
LpnPI	CCDG	2 cut(s)	96, 119
Lsp1109I	GCAGC	1 cut(s)	164
LweI	GCATC	1 cut(s)	84
MaeIII	GTNAC	2 cut(s)	25, 157
MboII	GAAGA	2 cut(s)	44, 55
MluCI	AATT	5 cut(s)	38, 128, 162, 176, 226
MnlI	CCTC	2 cut(s)	28, 79
MseI	TTAA	1 cut(s)	90
PfeI	GAWTC	1 cut(s)	124
PkrI	GCNGC	1 cut(s)	154
SaqAI	TTAA	1 cut(s)	90
SatI	GCNGC	1 cut(s)	153
SetI	ASST	2 cut(s)	63, 90
SfaNI	GCATC	1 cut(s)	84
SgeI	CNNG	4 cut(s)	95, 146, 155, 181
Sse9I	AATT	5 cut(s)	38, 128, 162, 176, 226
TaqI	TCGA	1 cut(s)	142
TasI	AATT	5 cut(s)	38, 128, 162, 176, 226
TfiI	GAWTC	1 cut(s)	124
Tru1I	TTAA	1 cut(s)	90
Tru9I	TTAA	1 cut(s)	90
TscAI	CASTG	1 cut(s)	13
TseI	GCWGC	1 cut(s)	152
TspDTI	ATGAA	1 cut(s)	204
TspRI	CASTG	1 cut(s)	13

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.