Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0008160

Physical Location & Seq

Genomic Coordinates Reverse (-)

35736545 .. 35737280

Gene Structure 736 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG140600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGTTCACATTGATGGACACTGATAAAGATGGCAAAGCTGATGTTGATGGGAATGGATTTTTGGATTATGCAGAGTTCGCAGCAGTTACAATTCACGTGGAAAAATTGGAGAATGATGAACATCTCTGGAGAGCATTTATATTCTACGACAAGGATGGAAGTGAGTATATTGATTTAGTTGAGCTAAGGCAAGCATTGGTAGATATGCCACTTTCAACCCACCTCTTCTCTTTGATGGCACTCCCAGGTCTATCTCAATACACTACGAGAATGAAGCGAAGTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009555 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010152 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0021700 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048229 GO:0048518 GO:0048583 GO:0048584 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0080134 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701 GO:1902584 GO:2000070

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7 Pkinase

Protein Analysis

95

Amino Acids

10.93

Weight (kDa)

4.54

Isoelectric Point (pI)

31.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008160)

Species	Orthologous Gene IDs
malus_domestica	MD07G1063200.v1.1
pyrus_communis	pycom02g21820 pycom02g21840
rosa_chinensis	RchiOBHm_Chr3g0470181
rosa_laevigata	RLG00000008106 RLG00000029152 RLG00000031580 RLG00000034936
rosa_multiflora	Rmu_co8301435.1_g000001 Rmu_co8456623.1_g000001 Rmu_sc0002799.1_g000014 Rmu_sc0014039.1_g000005
rosa_roxburghii	Rroxscaffold_3G00272930
rosa_rugosa	Rorug02G0162400 Rorug04G0088700
rosa_samantha	Rh1AG124000 Rh2BG466300 Rh3BG244000 Rh3CG171600 Rh4AG140600 Rh5BG342900 Rh5CG369900 Rh6AG182300 Rh7BG390200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcvI	CACGTG	1 cut(s)	97
AgsI	TTSAA	1 cut(s)	216
AjnI	CCWGG	1 cut(s)	244
AjuI	GAANNNNNNNTTGG	2 cut(s)	44, 76
AluBI	AGCT	2 cut(s)	38, 184
AluI	AGCT	2 cut(s)	38, 184
ApeKI	GCWGC	1 cut(s)	80
BbrPI	CACGTG	1 cut(s)	97
BbvI	GCAGC	1 cut(s)	92
BccI	CCATC	5 cut(s)	7, 23, 41, 149, 229
BciT130I	CCWGG	1 cut(s)	246
BisI	GCNGC	1 cut(s)	81
BlsI	GCNGC	1 cut(s)	82
Bme1390I	CCNGG	1 cut(s)	246
BmrFI	CCNGG	1 cut(s)	246
BpmI	CTGGAG	1 cut(s)	148
Bpu10I	CCTNAGC	1 cut(s)	185
BsaAI	YACGTR	1 cut(s)	97
BsaBI	GATNNNNATC	1 cut(s)	120
BsaJI	CCNNGG	1 cut(s)	244
Bse8I	GATNNNNATC	1 cut(s)	120
BseBI	CCWGG	1 cut(s)	246
BseDI	CCNNGG	1 cut(s)	244
BseGI	GGATG	1 cut(s)	160
BseJI	GATNNNNATC	1 cut(s)	120
BseXI	GCAGC	1 cut(s)	92
BssECI	CCNNGG	1 cut(s)	244
Bst2UI	CCWGG	1 cut(s)	246
Bst6I	CTCTTC	1 cut(s)	230
BstBAI	YACGTR	1 cut(s)	97
BstC8I	GCNNGC	1 cut(s)	192
BstDEI	CTNAG	1 cut(s)	185
BstF5I	GGATG	1 cut(s)	160
BstMWI	GCNNNNNNNGC	1 cut(s)	77
BstNI	CCWGG	1 cut(s)	246
BstSCI	CCNGG	1 cut(s)	244
BstV1I	GCAGC	1 cut(s)	92
BtsCI	GGATG	1 cut(s)	160
BtsIMutI	CAGTG	1 cut(s)	18
Cac8I	GCNNGC	1 cut(s)	192
CspCI	CAANNNNNGTGG	2 cut(s)	78, 113
CviJI	RGCY	2 cut(s)	38, 184
CviKI_1	RGCY	2 cut(s)	38, 184
DdeI	CTNAG	1 cut(s)	185
Eam1104I	CTCTTC	1 cut(s)	230
EarI	CTCTTC	1 cut(s)	230
Eco72I	CACGTG	1 cut(s)	97
EcoRII	CCWGG	1 cut(s)	244
FaiI	YATR	4 cut(s)	69, 140, 168, 206
Fnu4HI	GCNGC	1 cut(s)	81
FokI	GGATG	1 cut(s)	167
Fsp4HI	GCNGC	1 cut(s)	81
GluI	GCNGC	1 cut(s)	81
GsuI	CTGGAG	1 cut(s)	148
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188III	TCNNGA	1 cut(s)	127
Hpy8I	GTNNAC	1 cut(s)	6
HpyCH4IV	ACGT	1 cut(s)	96
HpyCH4V	TGCA	1 cut(s)	71
HpyF10VI	GCNNNNNNNGC	1 cut(s)	77
HpyF3I	CTNAG	1 cut(s)	185
HpySE526I	ACGT	1 cut(s)	96
LpnPI	CCDG	3 cut(s)	112, 231, 258
Lsp1109I	GCAGC	1 cut(s)	92
MaeII	ACGT	1 cut(s)	96
MaeIII	GTNAC	1 cut(s)	85
MboII	GAAGA	1 cut(s)	217
MluCI	AATT	2 cut(s)	90, 104
MnlI	CCTC	1 cut(s)	233
MseI	TTAA	1 cut(s)	286
MslI	CAYNNNNRTG	1 cut(s)	11
MspR9I	CCNGG	1 cut(s)	246
MvaI	CCWGG	1 cut(s)	246
MwoI	GCNNNNNNNGC	1 cut(s)	77
PkrI	GCNGC	1 cut(s)	82
PmaCI	CACGTG	1 cut(s)	97
PmlI	CACGTG	1 cut(s)	97
Ppu21I	YACGTR	1 cut(s)	97
Psp6I	CCWGG	1 cut(s)	244
PspCI	CACGTG	1 cut(s)	97
PspGI	CCWGG	1 cut(s)	244
RseI	CAYNNNNRTG	1 cut(s)	11
SaqAI	TTAA	1 cut(s)	286
SatI	GCNGC	1 cut(s)	81
ScrFI	CCNGG	1 cut(s)	246
SetI	ASST	5 cut(s)	40, 99, 186, 225, 250
SgeI	CNNG	8 cut(s)	107, 109, 139, 163, 203, 257, 258, 279
SmiMI	CAYNNNNRTG	1 cut(s)	11
Sse9I	AATT	2 cut(s)	90, 104
StyD4I	CCNGG	1 cut(s)	244
TaiI	ACGT	1 cut(s)	99
TasI	AATT	2 cut(s)	90, 104
Tru1I	TTAA	1 cut(s)	286
Tru9I	TTAA	1 cut(s)	286
TscAI	CASTG	1 cut(s)	25
TseI	GCWGC	1 cut(s)	80
TspDTI	ATGAA	2 cut(s)	132, 287
TspRI	CASTG	1 cut(s)	25

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.