Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0008160

Physical Location & Seq

Genomic Coordinates Reverse (-)

47266234 .. 47267443

Gene Structure 1210 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG369900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGCCTGCAATATCAGCTCAAGCAAAGGATCTTGTGAGGAAGATGTTGAATTCAGATCCCAAGCAGAGATTGACAGCCTTCCAAGTCATCCATGGATCAAGGAGGATGGTGAAGCACCAGATGTTCCTCTCGACAATGCTGTGCTCAGCAGGCTCAAACAGTTCAAAGCAATGAATCAGTTTAAGAAAGTTGCACTTCGGGTTATCGCCGGTTGCTTATCAGAGGAAGAAATCATGGGATTGAAAGAGATGTTCAAGAGCATAGATACAGACAACAGTGGGACTATCACACTTGAAGAGCTCAAGCAAGGTCTTGCTAAGCAAGGCACCAAGTTATCTGAACACGAAGCTAAACAACTAATGGAAGCTGCCGATGCTGATGGGAACGGAACCATAGACTATGATGAGTTCATCACAGCAACGATGCACTTGAACAGAATGGATAGAGAAGAGCATCTCTACACTGCCTTCCAGCACTTCGATAAAGATAGCAGCGGGTTTATCACGACTGAAGAGCTAGAGTCAGCCCTCCGCGAATACGGGATGCATGATGGAAGGGACATAAGAGAAATCATTGCTGAAGTCGACTCTGATAATGACGGTCGAATCAACTACGATGAATTTGTGGCAATGATGAGAAAAGGAAACCCAGAACCAAACCTGAAAAAGCGGCGGGACGATGTATTTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0001558 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010769 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022603 GO:0022604 GO:0023052 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0040008 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043900 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045595 GO:0046777 GO:0048638 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051239 GO:0051510 GO:0051716 GO:0060284 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0080092 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 Pkinase

Protein Analysis

230

Amino Acids

26.02

Weight (kDa)

4.66

Isoelectric Point (pI)

48.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_1	PF00036	81 - 107	5.9e-08	EF hand domain
EF-hand_7	PF13499	81 - 141	3.5e-16	EF-hand domain pair
EF-hand_6	PF13405	81 - 107	4.2e-07	EF-hand domain
EF-hand_5	PF13202	81 - 103	4.7e-06	EF hand
EF-hand_1	PF00036	116 - 143	2.8e-06	EF hand domain
EF-hand_7	PF13499	150 - 213	7.2e-18	EF-hand domain pair
EF-hand_6	PF13405	153 - 181	8e-07	EF-hand domain
EF-hand_1	PF00036	155 - 179	3.6e-06	EF hand domain
EF-hand_8	PF13833	165 - 214	5.2e-06	EF-hand domain pair
EF-hand_1	PF00036	187 - 214	5.9e-09	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0008160)

Species	Orthologous Gene IDs
malus_domestica	MD07G1063200.v1.1
pyrus_communis	pycom02g21820 pycom02g21840
rosa_chinensis	RchiOBHm_Chr3g0470181
rosa_laevigata	RLG00000008106 RLG00000029152 RLG00000031580 RLG00000034936
rosa_multiflora	Rmu_co8301435.1_g000001 Rmu_co8456623.1_g000001 Rmu_sc0002799.1_g000014 Rmu_sc0014039.1_g000005
rosa_roxburghii	Rroxscaffold_3G00272930
rosa_rugosa	Rorug02G0162400 Rorug04G0088700
rosa_samantha	Rh1AG124000 Rh2BG466300 Rh3BG244000 Rh3CG171600 Rh4AG140600 Rh5BG342900 Rh5CG369900 Rh6AG182300 Rh7BG390200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	326
AccI	GTMKAC	1 cut(s)	585
AccII	CGCG	1 cut(s)	534
AciI	CCGC	4 cut(s)	495, 532, 670, 673
AclWI	GGATC	3 cut(s)	37, 51, 104
AcsI	RAATTY	2 cut(s)	50, 620
AcuI	CTGAAG	2 cut(s)	531, 600
AgsI	TTSAA	6 cut(s)	50, 166, 244, 256, 296, 433
AluBI	AGCT	5 cut(s)	18, 301, 350, 368, 517
AluI	AGCT	5 cut(s)	18, 301, 350, 368, 517
Alw21I	GWGCWC	2 cut(s)	147, 303
AlwI	GGATC	3 cut(s)	37, 51, 104
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	368, 492
ApoI	RAATTY	2 cut(s)	50, 620
ArsI	GACNNNNNNTTYG	1 cut(s)	668
AsuHPI	GGTGA	1 cut(s)	122
BanI	GGYRCC	1 cut(s)	326
BanII	GRGCYC	1 cut(s)	303
Bbv12I	GWGCWC	2 cut(s)	147, 303
BbvI	GCAGC	2 cut(s)	355, 504
BccI	CCATC	3 cut(s)	101, 374, 545
BfaI	CTAG	1 cut(s)	518
BisI	GCNGC	3 cut(s)	369, 493, 671
BlpI	GCTNAGC	2 cut(s)	146, 318
BlsI	GCNGC	3 cut(s)	370, 494, 672
BmiI	GGNNCC	2 cut(s)	328, 391
BmsI	GCATC	4 cut(s)	364, 414, 463, 534
Bpu1102I	GCTNAGC	2 cut(s)	146, 318
BpuEI	CTTGAG	2 cut(s)	4, 287
BsaJI	CCNNGG	1 cut(s)	92
Bse118I	RCCGGY	1 cut(s)	209
Bse3DI	GCAATG	3 cut(s)	177, 573, 636
BseDI	CCNNGG	1 cut(s)	92
BseGI	GGATG	3 cut(s)	88, 112, 549
BseMI	GCAATG	3 cut(s)	177, 573, 636
BseMII	CTCAG	1 cut(s)	160
BseXI	GCAGC	2 cut(s)	355, 504
Bsh1236I	CGCG	1 cut(s)	534
Bsh1285I	CGRYCG	1 cut(s)	604
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	326
BsiEI	CGRYCG	1 cut(s)	604
BsiHKAI	GWGCWC	2 cut(s)	147, 303
BsiSI	CCGG	1 cut(s)	210
BslFI	GGGAC	3 cut(s)	295, 572, 689
BsmFI	GGGAC	3 cut(s)	295, 572, 689
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	2 cut(s)	147, 303
Bsp143I	GATC	3 cut(s)	29, 56, 96
Bsp1720I	GCTNAGC	2 cut(s)	146, 318
Bsp19I	CCATGG	1 cut(s)	92
BspACI	CCGC	4 cut(s)	495, 532, 670, 673
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	159
BspFNI	CGCG	1 cut(s)	534
BspLI	GGNNCC	2 cut(s)	328, 391
BspPI	GGATC	3 cut(s)	37, 51, 104
BspQI	GCTCTTC	3 cut(s)	291, 444, 507
BspT107I	GGYRCC	1 cut(s)	326
BsrDI	GCAATG	3 cut(s)	177, 573, 636
BsrFI	RCCGGY	1 cut(s)	209
BssAI	RCCGGY	1 cut(s)	209
BssECI	CCNNGG	1 cut(s)	92
BssMI	GATC	3 cut(s)	29, 56, 96
BssT1I	CCWWGG	1 cut(s)	92
Bst4CI	ACNGT	3 cut(s)	162, 278, 602
Bst6I	CTCTTC	3 cut(s)	291, 444, 507
BstC8I	GCNNGC	2 cut(s)	7, 152
BstDEI	CTNAG	2 cut(s)	146, 318
BstDSI	CCRYGG	1 cut(s)	92
BstF5I	GGATG	3 cut(s)	88, 112, 549
BstFNI	CGCG	1 cut(s)	534
BstKTI	GATC	3 cut(s)	32, 59, 99
BstMBI	GATC	3 cut(s)	29, 56, 96
BstMCI	CGRYCG	1 cut(s)	604
BstMWI	GCNNNNNNNGC	3 cut(s)	15, 151, 374
BstUI	CGCG	1 cut(s)	534
BstV1I	GCAGC	2 cut(s)	355, 504
BstX2I	RGATCY	2 cut(s)	29, 56
BstYI	RGATCY	2 cut(s)	29, 56
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	92
BtsCI	GGATG	3 cut(s)	88, 112, 549
BtsI	GCAGTG	1 cut(s)	462
BtsIMutI	CAGTG	2 cut(s)	283, 462
Cac8I	GCNNGC	2 cut(s)	7, 152
Cfr10I	RCCGGY	1 cut(s)	209
CviAII	CATG	3 cut(s)	93, 235, 548
CviJI	RGCY	9 cut(s)	5, 18, 78, 154, 301, 350, 368, 517, 527
CviKI_1	RGCY	9 cut(s)	5, 18, 78, 154, 301, 350, 368, 517, 527
DdeI	CTNAG	2 cut(s)	146, 318
DpnI	GATC	3 cut(s)	31, 58, 98
DpnII	GATC	3 cut(s)	29, 56, 96
Eam1104I	CTCTTC	3 cut(s)	291, 444, 507
EarI	CTCTTC	3 cut(s)	291, 444, 507
Ecl136II	GAGCTC	1 cut(s)	301
Eco130I	CCWWGG	1 cut(s)	92
Eco24I	GRGCYC	1 cut(s)	303
Eco53kI	GAGCTC	1 cut(s)	301
Eco57I	CTGAAG	2 cut(s)	531, 600
EcoICRI	GAGCTC	1 cut(s)	301
EcoRI	GAATTC	1 cut(s)	50
EcoT14I	CCWWGG	1 cut(s)	92
EcoT22I	ATGCAT	1 cut(s)	549
EcoT38I	GRGCYC	1 cut(s)	303
ErhI	CCWWGG	1 cut(s)	92
FaeI	CATG	3 cut(s)	96, 238, 551
FaiI	YATR	7 cut(s)	94, 236, 263, 395, 402, 549, 563
FalI	AAGNNNNNCTT	2 cut(s)	180, 212
FaqI	GGGAC	3 cut(s)	295, 572, 689
FatI	CATG	3 cut(s)	92, 234, 547
FauI	CCCGC	2 cut(s)	488, 666
FblI	GTMKAC	1 cut(s)	585
Fnu4HI	GCNGC	3 cut(s)	369, 493, 671
FokI	GGATG	3 cut(s)	75, 119, 556
FriOI	GRGCYC	1 cut(s)	303
Fsp4HI	GCNGC	3 cut(s)	369, 493, 671
FspBI	CTAG	1 cut(s)	518
GluI	GCNGC	3 cut(s)	369, 493, 671
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	210
Hin1II	CATG	3 cut(s)	96, 238, 551
HincII	GTYRAC	1 cut(s)	586
HindII	GTYRAC	1 cut(s)	586
HinfI	GANTC	4 cut(s)	175, 521, 587, 606
HpaII	CCGG	1 cut(s)	210
HphI	GGTGA	1 cut(s)	122
Hpy166II	GTNNAC	1 cut(s)	586
Hpy188I	TCNGA	4 cut(s)	56, 223, 340, 592
Hpy188III	TCNNGA	3 cut(s)	131, 256, 505
Hpy8I	GTNNAC	1 cut(s)	586
HpyAV	CCTTC	3 cut(s)	89, 478, 549
HpyCH4III	ACNGT	3 cut(s)	162, 278, 602
HpyCH4V	TGCA	4 cut(s)	9, 194, 427, 547
HpyF10VI	GCNNNNNNNGC	3 cut(s)	15, 151, 374
HpyF3I	CTNAG	2 cut(s)	146, 318
Hsp92II	CATG	3 cut(s)	96, 238, 551
Kzo9I	GATC	3 cut(s)	29, 56, 96
LguI	GCTCTTC	3 cut(s)	291, 444, 507
LpnPI	CCDG	7 cut(s)	19, 132, 136, 223, 485, 663, 674
Lsp1109I	GCAGC	2 cut(s)	355, 504
LweI	GCATC	4 cut(s)	364, 414, 463, 534
MaeI	CTAG	1 cut(s)	518
MalI	GATC	3 cut(s)	31, 58, 98
MboI	GATC	3 cut(s)	29, 56, 96
MboII	GAAGA	5 cut(s)	53, 239, 308, 461, 524
MflI	RGATCY	2 cut(s)	29, 56
MhlI	GDGCHC	2 cut(s)	147, 303
MluCI	AATT	2 cut(s)	50, 620
MlyI	GAGTC	2 cut(s)	530, 581
MnlI	CCTC	5 cut(s)	31, 97, 138, 217, 539
Mph1103I	ATGCAT	1 cut(s)	549
MseI	TTAA	1 cut(s)	183
MspA1I	CMGCKG	1 cut(s)	495
MspI	CCGG	1 cut(s)	210
MvnI	CGCG	1 cut(s)	534
MwoI	GCNNNNNNNGC	3 cut(s)	15, 151, 374
NcoI	CCATGG	1 cut(s)	92
NdeII	GATC	3 cut(s)	29, 56, 96
NlaIII	CATG	3 cut(s)	96, 238, 551
NlaIV	GGNNCC	2 cut(s)	328, 391
NsiI	ATGCAT	1 cut(s)	549
PciSI	GCTCTTC	3 cut(s)	291, 444, 507
PfeI	GAWTC	2 cut(s)	175, 606
PkrI	GCNGC	3 cut(s)	370, 494, 672
PleI	GAGTC	2 cut(s)	529, 581
PpsI	GAGTC	2 cut(s)	529, 581
Psp124BI	GAGCTC	1 cut(s)	303
PspN4I	GGNNCC	2 cut(s)	328, 391
PsuI	RGATCY	2 cut(s)	29, 56
SacI	GAGCTC	1 cut(s)	303
SalI	GTCGAC	1 cut(s)	584
SapI	GCTCTTC	3 cut(s)	291, 444, 507
SaqAI	TTAA	1 cut(s)	183
SatI	GCNGC	3 cut(s)	369, 493, 671
Sau3AI	GATC	3 cut(s)	29, 56, 96
SchI	GAGTC	2 cut(s)	530, 581
SduI	GDGCHC	2 cut(s)	147, 303
SetI	ASST	7 cut(s)	20, 303, 313, 352, 370, 519, 663
SfaNI	GCATC	4 cut(s)	364, 414, 463, 534
SmlI	CTYRAG	2 cut(s)	19, 302
SmoI	CTYRAG	2 cut(s)	19, 302
Sse9I	AATT	2 cut(s)	50, 620
SsiI	CCGC	4 cut(s)	495, 532, 670, 673
SspMI	CTAG	1 cut(s)	518
SstI	GAGCTC	1 cut(s)	303
StyI	CCWWGG	1 cut(s)	92
TaaI	ACNGT	3 cut(s)	162, 278, 602
TaqI	TCGA	4 cut(s)	132, 480, 585, 604
TasI	AATT	2 cut(s)	50, 620
TauI	GCSGC	1 cut(s)	673
TfiI	GAWTC	2 cut(s)	175, 606
Tru1I	TTAA	1 cut(s)	183
Tru9I	TTAA	1 cut(s)	183
TscAI	CASTG	2 cut(s)	283, 469
TseI	GCWGC	2 cut(s)	368, 492
TspDTI	ATGAA	3 cut(s)	188, 400, 633
TspGWI	ACGGA	1 cut(s)	402
TspRI	CASTG	2 cut(s)	283, 469
XapI	RAATTY	2 cut(s)	50, 620
XcmI	CCANNNNNNNNNTGG	1 cut(s)	90
XmiI	GTMKAC	1 cut(s)	585
XspI	CTAG	1 cut(s)	518
Zsp2I	ATGCAT	1 cut(s)	549

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.