Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0004583

Physical Location & Seq

Genomic Coordinates Forward (+)

13641862 .. 13650043

Gene Structure 8182 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1467 bp

ATGCTGTGCTATAGCAACCGTGCAGCAACACGTCTGACTGTTGGAAGAATAAGAGATGCACTTGGGGACTGTAAGATGGCTGATGCAATTGATCCCAACTTCCTGAAAGTGCAGGTTAGAGCTTCCAACTGTTATCTTGCTCTTGGGGAAGTTGAAGATGCTTCACACAATTTTAGGAGGTGCCTGCAATTGGCAAATGATGTCTTTGTGGACCGAAAGATTGCAGTAGAAGCTTCTGATGGCTTACGAAAAGCACAGAAAGTATCTGAATGCCTGAATCTTTCTGCTCAACTTTTGCTATGGAAAACATCTACTAATGCCGAGCGTGCTTTACAACTTATTGATGAAGCTTTGGTAATAAGTTCTAGCTCAGAAAAATTACTTGAAATGAAAGCGGAGGCTTTTTTTGCGGTGCGTAGGTATGAAGAGGTGATTGAGCTGTGTGAGCAGACCCTTAGTTCTGCGGAAAAGAACAACCTTCCAGCAGATACCAATTTTACTTCAGATAGTTCCGAACTATCAAAGTACTTTTACTTCAGACTCTGGCGGTGCCGCATGATTTTTAAATCCTATTTTTATCTTGGAAAACTCGAGGAGGGTCTTGCTGCACTAGATAAATATGAGGAAAAGATGTCTACCTCATATAGGAATTGGAGAAAAACGCTGCAATCATCAGAACCCCTTGTTCCCGTTGTACGTGAACTTCTGTCTCATAAGGTTGCGGGGAATGAAGCATTTCAGGCTGGAAGACATACTGAAGTTGTTGAGCATTATACTACTGCTTTGTGCTGCAATGTTGAATCACGTCCATTTACAGCTGTTTGTTTTTGCAATCGTGCTGTTGCATACAAGGCATTGGGCCGGATTACTGATGCTATTGCTGATTGCAGTCTAGCTATAGCTCTTGATGGAAATTATCTAAAGGCTATTTCTGGACGAGCCACATTATACAAGATGATCAGATATTATGGAGAAGCCGCTAAAGATCTTCGGAGACTGGTATCTATTCTCGCTAAGCAGGAAGAGGAAAAAACTAATCTGTGTGGAGCATCTGACAGATCCATTAGCGGCACAAATGTCTTGAGACAAGCTCGTCTTCATCTTTCTAAAATAGAAGAAAAAGACAGAAAGGACATCCCCTTGGATATGTACCTTATTCTGGGAGTTGAACCATCTGTTTCGGCATCAGAAATCAAGAAGGCGTTTCGGAACGCTGCACTTCGACATCATCCTGACAAGGCTGGTCAATTCTTTTCAAGGAGCGATAACGGGTGTTGGAAGGAGATAGCAGAAGACGTGCAGAAGGATGCTGGCAGGCTTTTTAAAATGATTGGGGAGGCATATGCAGTACTTTCAGACCCAACCAAGCGTGCAAGGTATGGCACCGAAGAGGAGATGAGGAATGCACAAAAGAAACGCAGTGGAAGCAGCACATCTAGAATGCCAGCAGATGTTCAAAAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001671 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006457 GO:0006458 GO:0008047 GO:0008150 GO:0009987 GO:0030234 GO:0031072 GO:0031974 GO:0031981 GO:0032781 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043462 GO:0044093 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0048583 GO:0050789 GO:0050790 GO:0050794 GO:0051084 GO:0051085 GO:0051336 GO:0051345 GO:0060589 GO:0060590 GO:0061077 GO:0065007 GO:0065009 GO:0070013 GO:0080134 GO:0080135 GO:0098772 GO:1900034

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ TPR_8

Protein Analysis

489

Amino Acids

55.04

Weight (kDa)

8.83

Isoelectric Point (pI)

46.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	382 - 460	3.4e-15	DnaJ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004583)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12430
fragaria_vesca	FvH4_3g28360 FvH4_3g28360 FvH4_3g28360 FvH4_3g28360
malus_domestica	MD03G1171100.v1.1 MD03G1171300.v1.1 MD11G1188500.v1.1 MD11G1188700.v1.1
prunus_persica	Prupe.4G255700_v2.0.a1 Prupe.4G255700_v2.0.a1 Prupe.4G255700_v2.0.a1 Prupe.4G255700_v2.0.a1
pyrus_communis	pycom03g12820 pycom03g12830 pycom03g12840 pycom03g12860 pycom11g16530 pycom15g27190
rosa_chinensis	RchiOBHm_Chr5g0053371
rosa_laevigata	RLG00000034766
rosa_multiflora	Rmu_sc0001966.1_g000003
rosa_roxburghii	Rroxscaffold_1G00029100
rosa_rugosa	Rorug05G0267200 Rorug05G0267300
rosa_samantha	Rh5AG339800 Rh5BG350200 Rh5CG376600 Rh5DG364200
rosa_wichuraiana	Rw5G032070 Rw5G032080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1092
Acc36I	ACCTGC	1 cut(s)	103
AccB1I	GGYRCC	3 cut(s)	180, 549, 1382
AccI	GTMKAC	1 cut(s)	635
AciI	CCGC	8 cut(s)	395, 410, 464, 547, 553, 722, 978, 1068
AclWI	GGATC	2 cut(s)	86, 1053
AcuI	CTGAAG	3 cut(s)	486, 520, 777
AfaI	GTAC	4 cut(s)	527, 696, 1151, 1350
AfiI	CCNNNNNNNGG	3 cut(s)	190, 645, 1159
AflIII	ACRYGT	1 cut(s)	29
AgsI	TTSAA	6 cut(s)	155, 386, 800, 1169, 1257, 1457
AjiI	CACGTC	3 cut(s)	32, 806, 1297
AluBI	AGCT	9 cut(s)	122, 233, 350, 369, 439, 818, 896, 902, 1091
AluI	AGCT	9 cut(s)	122, 233, 350, 369, 439, 818, 896, 902, 1091
Alw26I	GTCTC	3 cut(s)	714, 988, 1078
AlwI	GGATC	2 cut(s)	86, 1053
AlwNI	CAGNNNCTG	1 cut(s)	543
Ama87I	CYCGRG	1 cut(s)	590
AoxI	GGCC	1 cut(s)	859
ApeKI	GCWGC	6 cut(s)	23, 605, 664, 789, 1214, 1428
Asp700I	GAANNNNTTC	1 cut(s)	735
AspS9I	GGNCC	2 cut(s)	211, 859
AsuHPI	GGTGA	1 cut(s)	442
AvaI	CYCGRG	1 cut(s)	590
AvaII	GGWCC	1 cut(s)	211
BanI	GGYRCC	3 cut(s)	180, 549, 1382
BarI	GAAGNNNNNNTAC	4 cut(s)	518, 550, 687, 719
BbsI	GAAGAC	3 cut(s)	754, 1088, 1299
BbvI	GCAGC	6 cut(s)	35, 592, 651, 776, 1201, 1440
BccI	CCATC	4 cut(s)	70, 233, 902, 1180
BclI	TGATCA	1 cut(s)	957
BcoDI	GTCTC	3 cut(s)	714, 988, 1078
BfaI	CTAG	4 cut(s)	366, 611, 893, 1437
BfmI	CTRYAG	2 cut(s)	10, 897
BfuAI	ACCTGC	1 cut(s)	103
BglII	AGATCT	1 cut(s)	985
BisI	GCNGC	9 cut(s)	24, 553, 606, 665, 790, 978, 1069, 1215, 1429
BlpI	GCTNAGC	1 cut(s)	1014
BlsI	GCNGC	9 cut(s)	25, 554, 607, 666, 791, 979, 1070, 1216, 1430
BmcAI	AGTACT	2 cut(s)	527, 1350
Bme18I	GGWCC	1 cut(s)	211
BmeT110I	CYCGRG	1 cut(s)	590
BmgBI	CACGTC	3 cut(s)	32, 806, 1297
BmgT120I	GGNCC	2 cut(s)	211, 859
BmiI	GGNNCC	3 cut(s)	182, 551, 1384
BmsI	GCATC	7 cut(s)	46, 73, 148, 862, 1058, 1193, 1297
BpiI	GAAGAC	3 cut(s)	754, 1088, 1299
BplI	GAGNNNNNCTC	2 cut(s)	1075, 1107
Bpu1102I	GCTNAGC	1 cut(s)	1014
BpuEI	CTTGAG	1 cut(s)	1102
BsaAI	YACGTR	1 cut(s)	698
BsaJI	CCNNGG	1 cut(s)	1140
Bsc4I	CCNNNNNNNGG	3 cut(s)	190, 645, 1159
Bse1I	ACTGG	1 cut(s)	1002
Bse3DI	GCAATG	1 cut(s)	799
BseDI	CCNNGG	1 cut(s)	1140
BseGI	GGATG	3 cut(s)	1134, 1228, 1312
BseLI	CCNNNNNNNGG	3 cut(s)	190, 645, 1159
BseMI	GCAATG	1 cut(s)	799
BseMII	CTCAG	1 cut(s)	384
BseNI	ACTGG	1 cut(s)	1002
BseRI	GAGGAG	2 cut(s)	608, 1406
BseXI	GCAGC	6 cut(s)	35, 592, 651, 776, 1201, 1440
BsgI	GTGCAG	5 cut(s)	42, 131, 591, 1200, 1319
BshFI	GGCC	1 cut(s)	861
BshNI	GGYRCC	3 cut(s)	180, 549, 1382
BsiHKCI	CYCGRG	1 cut(s)	590
BsiSI	CCGG	1 cut(s)	862
BslFI	GGGAC	1 cut(s)	80
BslI	CCNNNNNNNGG	3 cut(s)	190, 645, 1159
BsmAI	GTCTC	3 cut(s)	714, 988, 1078
BsmFI	GGGAC	1 cut(s)	80
BsmI	GAATGC	3 cut(s)	275, 1408, 1446
BsnI	GGCC	1 cut(s)	861
BsoBI	CYCGRG	1 cut(s)	590
Bsp143I	GATC	4 cut(s)	91, 957, 985, 1058
Bsp1720I	GCTNAGC	1 cut(s)	1014
BspACI	CCGC	8 cut(s)	395, 410, 464, 547, 553, 722, 978, 1068
BspANI	GGCC	1 cut(s)	861
BspCNI	CTCAG	1 cut(s)	383
BspLI	GGNNCC	3 cut(s)	182, 551, 1384
BspMI	ACCTGC	1 cut(s)	103
BspPI	GGATC	2 cut(s)	86, 1053
BspT107I	GGYRCC	3 cut(s)	180, 549, 1382
BsrDI	GCAATG	1 cut(s)	799
BsrI	ACTGG	1 cut(s)	1002
BssECI	CCNNGG	1 cut(s)	1140
BssMI	GATC	4 cut(s)	91, 957, 985, 1058
BssT1I	CCWWGG	1 cut(s)	1140
Bst4CI	ACNGT	4 cut(s)	20, 40, 71, 131
Bst6I	CTCTTC	3 cut(s)	420, 1017, 1383
BstBAI	YACGTR	1 cut(s)	698
BstC8I	GCNNGC	6 cut(s)	185, 327, 1312, 1316, 1371, 1446
BstDEI	CTNAG	3 cut(s)	370, 455, 1014
BstENI	CCTNNNNNAGG	1 cut(s)	643
BstF5I	GGATG	3 cut(s)	1134, 1228, 1312
BstKTI	GATC	4 cut(s)	94, 960, 988, 1061
BstMAI	GTCTC	3 cut(s)	714, 988, 1078
BstMBI	GATC	4 cut(s)	91, 957, 985, 1058
BstMWI	GCNNNNNNNGC	7 cut(s)	230, 326, 407, 445, 740, 851, 1425
BstSFI	CTRYAG	2 cut(s)	10, 897
BstV1I	GCAGC	6 cut(s)	35, 592, 651, 776, 1201, 1440
BstV2I	GAAGAC	3 cut(s)	754, 1088, 1299
BstX2I	RGATCY	2 cut(s)	985, 1058
BstYI	RGATCY	2 cut(s)	985, 1058
BsuRI	GGCC	1 cut(s)	861
BtrI	CACGTC	3 cut(s)	32, 806, 1297
BtsCI	GGATG	3 cut(s)	1134, 1228, 1312
BtsI	GCAGTG	1 cut(s)	1426
BtsIMutI	CAGTG	1 cut(s)	1426
BveI	ACCTGC	1 cut(s)	103
Cac8I	GCNNGC	6 cut(s)	185, 327, 1312, 1316, 1371, 1446
CaiI	CAGNNNCTG	1 cut(s)	543
Cfr13I	GGNCC	2 cut(s)	211, 859
Csp6I	GTAC	4 cut(s)	526, 695, 1150, 1349
CviAII	CATG	1 cut(s)	556
CviQI	GTAC	4 cut(s)	526, 695, 1150, 1349
DdeI	CTNAG	3 cut(s)	370, 455, 1014
DpnI	GATC	4 cut(s)	93, 959, 987, 1060
DpnII	GATC	4 cut(s)	91, 957, 985, 1058
DraI	TTTAAA	2 cut(s)	565, 1324
DrdI	GACNNNNNNGTC	1 cut(s)	1092
DseDI	GACNNNNNNGTC	1 cut(s)	1092
Eam1104I	CTCTTC	3 cut(s)	420, 1017, 1383
EarI	CTCTTC	3 cut(s)	420, 1017, 1383
Eco130I	CCWWGG	1 cut(s)	1140
Eco47I	GGWCC	1 cut(s)	211
Eco57I	CTGAAG	3 cut(s)	486, 520, 777
Eco88I	CYCGRG	1 cut(s)	590
EcoNI	CCTNNNNNAGG	1 cut(s)	643
EcoT14I	CCWWGG	1 cut(s)	1140
ErhI	CCWWGG	1 cut(s)	1140
FaeI	CATG	1 cut(s)	559
FalI	AAGNNNNNCTT	2 cut(s)	1080, 1112
FaqI	GGGAC	1 cut(s)	80
FatI	CATG	1 cut(s)	555
FauI	CCCGC	1 cut(s)	715
FauNDI	CATATG	1 cut(s)	1342
FbaI	TGATCA	1 cut(s)	957
FblI	GTMKAC	1 cut(s)	635
Fnu4HI	GCNGC	9 cut(s)	24, 553, 606, 665, 790, 978, 1069, 1215, 1429
FokI	GGATG	3 cut(s)	1121, 1215, 1319
Fsp4HI	GCNGC	9 cut(s)	24, 553, 606, 665, 790, 978, 1069, 1215, 1429
FspBI	CTAG	4 cut(s)	366, 611, 893, 1437
GluI	GCNGC	9 cut(s)	24, 553, 606, 665, 790, 978, 1069, 1215, 1429
HaeIII	GGCC	1 cut(s)	861
HapII	CCGG	1 cut(s)	862
Hin1II	CATG	1 cut(s)	559
HindIII	AAGCTT	2 cut(s)	231, 348
HinfI	GANTC	3 cut(s)	277, 540, 800
HpaII	CCGG	1 cut(s)	862
HphI	GGTGA	1 cut(s)	442
Hpy166II	GTNNAC	3 cut(s)	211, 636, 701
Hpy188III	TCNNGA	7 cut(s)	103, 905, 933, 1081, 1195, 1232, 1437
Hpy8I	GTNNAC	3 cut(s)	211, 636, 701
HpyAV	CCTTC	4 cut(s)	488, 1192, 1273, 1297
HpyCH4III	ACNGT	4 cut(s)	20, 40, 71, 131
HpyCH4IV	ACGT	4 cut(s)	31, 697, 805, 1296
HpyF10VI	GCNNNNNNNGC	7 cut(s)	230, 326, 407, 445, 740, 851, 1425
HpyF3I	CTNAG	3 cut(s)	370, 455, 1014
HpySE526I	ACGT	4 cut(s)	31, 697, 805, 1296
Hsp92II	CATG	1 cut(s)	559
Ksp22I	TGATCA	1 cut(s)	957
Kzo9I	GATC	4 cut(s)	91, 957, 985, 1058
LmnI	GCTCC	2 cut(s)	1046, 1260
Lsp1109I	GCAGC	6 cut(s)	35, 592, 651, 776, 1201, 1440
LweI	GCATC	7 cut(s)	46, 73, 148, 862, 1058, 1193, 1297
MaeI	CTAG	4 cut(s)	366, 611, 893, 1437
MaeII	ACGT	4 cut(s)	31, 697, 805, 1296
MalI	GATC	4 cut(s)	93, 959, 987, 1060
MboI	GATC	4 cut(s)	91, 957, 985, 1058
MfeI	CAATTG	2 cut(s)	87, 188
MflI	RGATCY	2 cut(s)	985, 1058
MluCI	AATT	8 cut(s)	87, 169, 188, 377, 493, 649, 913, 1247
MlyI	GAGTC	1 cut(s)	534
MmeI	TCCRAC	3 cut(s)	22, 150, 1256
MroXI	GAANNNNTTC	1 cut(s)	735
MseI	TTAA	2 cut(s)	564, 1323
MspA1I	CMGCKG	1 cut(s)	818
MspI	CCGG	1 cut(s)	862
MunI	CAATTG	2 cut(s)	87, 188
Mva1269I	GAATGC	3 cut(s)	275, 1408, 1446
MwoI	GCNNNNNNNGC	7 cut(s)	230, 326, 407, 445, 740, 851, 1425
NdeI	CATATG	1 cut(s)	1342
NdeII	GATC	4 cut(s)	91, 957, 985, 1058
NlaIII	CATG	1 cut(s)	559
NlaIV	GGNNCC	3 cut(s)	182, 551, 1384
NmeAIII	GCCGAG	1 cut(s)	346
PaeR7I	CTCGAG	1 cut(s)	590
PctI	GAATGC	3 cut(s)	275, 1408, 1446
PdmI	GAANNNNTTC	1 cut(s)	735
PfeI	GAWTC	2 cut(s)	277, 800
PkrI	GCNGC	9 cut(s)	25, 554, 607, 666, 791, 979, 1070, 1216, 1430
PleI	GAGTC	1 cut(s)	534
PpsI	GAGTC	1 cut(s)	534
Ppu21I	YACGTR	1 cut(s)	698
PspN4I	GGNNCC	3 cut(s)	182, 551, 1384
PspPI	GGNCC	2 cut(s)	211, 859
PspXI	VCTCGAGB	1 cut(s)	590
PstNI	CAGNNNCTG	1 cut(s)	543
PsuI	RGATCY	2 cut(s)	985, 1058
PvuII	CAGCTG	1 cut(s)	818
RsaI	GTAC	4 cut(s)	527, 696, 1151, 1350
RsaNI	GTAC	4 cut(s)	526, 695, 1150, 1349
SaqAI	TTAA	2 cut(s)	564, 1323
SatI	GCNGC	9 cut(s)	24, 553, 606, 665, 790, 978, 1069, 1215, 1429
Sau3AI	GATC	4 cut(s)	91, 957, 985, 1058
Sau96I	GGNCC	2 cut(s)	211, 859
ScaI	AGTACT	2 cut(s)	527, 1350
SchI	GAGTC	1 cut(s)	534
SfaNI	GCATC	7 cut(s)	46, 73, 148, 862, 1058, 1193, 1297
SfcI	CTRYAG	2 cut(s)	10, 897
Sfr274I	CTCGAG	1 cut(s)	590
SinI	GGWCC	1 cut(s)	211
SlaI	CTCGAG	1 cut(s)	590
SmlI	CTYRAG	2 cut(s)	590, 1081
SmoI	CTYRAG	2 cut(s)	590, 1081
Sse9I	AATT	8 cut(s)	87, 169, 188, 377, 493, 649, 913, 1247
SsiI	CCGC	8 cut(s)	395, 410, 464, 547, 553, 722, 978, 1068
SspMI	CTAG	4 cut(s)	366, 611, 893, 1437
StyI	CCWWGG	1 cut(s)	1140
TaaI	ACNGT	4 cut(s)	20, 40, 71, 131
TaiI	ACGT	4 cut(s)	34, 700, 808, 1299
TaqI	TCGA	2 cut(s)	591, 1222
TaqII	GACCGA	1 cut(s)	228
TasI	AATT	8 cut(s)	87, 169, 188, 377, 493, 649, 913, 1247
TatI	WGTACW	2 cut(s)	525, 1348
TauI	GCSGC	3 cut(s)	555, 980, 1071
TfiI	GAWTC	2 cut(s)	277, 800
Tru1I	TTAA	2 cut(s)	564, 1323
Tru9I	TTAA	2 cut(s)	564, 1323
TscAI	CASTG	1 cut(s)	1426
TseI	GCWGC	6 cut(s)	23, 605, 664, 789, 1214, 1428
TspDTI	ATGAA	5 cut(s)	360, 404, 438, 744, 1088
TspRI	CASTG	1 cut(s)	1426
VpaK11BI	GGWCC	1 cut(s)	211
XagI	CCTNNNNNAGG	1 cut(s)	643
XbaI	TCTAGA	1 cut(s)	1436
XhoI	CTCGAG	1 cut(s)	590
XmiI	GTMKAC	1 cut(s)	635
XmnI	GAANNNNTTC	1 cut(s)	735
XspI	CTAG	4 cut(s)	366, 611, 893, 1437
ZrmI	AGTACT	2 cut(s)	527, 1350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.