Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0004158

Physical Location & Seq

Genomic Coordinates Reverse (-)

15491872 .. 15492440

Gene Structure 569 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g14170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGATGCCTGCTCAAGAAGAAAGATCTGACAAGGCTTCATCATTGGCTGGTCAAGATGATAAACCATCCGGCATTTATGGGCAAATGTCTAGTAACAATGAGCCAAATAGTACTCCTGAGCTCTCTCCTGTCACAGGCAATGATGATAGTGTAGAAGGCACAGGCGCACTGTCAAATAGGTTGCCAGATGAGGTTGATGAGGATGACCAATTCTCAAAAAGGAGGAGGATGGATGTCGGTAGCATTGATATCACACCAATTGTTAAGCCTATCCGAGAACCACGAGTTGTTGTTCAGACTCTCAGTGAGGTTGATATATTAGATGATGGATACCGCTGGCGCAAATATGGTCAGAAAGTGGTAAGGGGAAATCCTAATCCAAGGTATGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0006950 GO:0008150 GO:0009611 GO:0009889 GO:0009891 GO:0009893 GO:0009961 GO:0010033 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0043200 GO:0043565 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

131

Amino Acids

14.42

Weight (kDa)

4.69

Isoelectric Point (pI)

43.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	108 - 128	4.9e-07	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0004158)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26640 AT4G26640 AT4G26640 AT4G26640 AT4G26640 AT4G26640 AT4G26640
fragaria_vesca	FvH4_3g24010 FvH4_3g24010
malus_domestica	MD03G1188900.v1.1 MD11G1205000.v1.1
prunus_persica	Prupe.4G232600_v2.0.a1 Prupe.4G232600_v2.0.a1 Prupe.4G232600_v2.0.a1
pyrus_communis	pycom03g14170 pycom11g17770
rosa_chinensis	RchiOBHm_Chr5g0042581 RchiOBHm_Chr5g0042601
rosa_laevigata	RLG00000034142
rosa_multiflora	Rmu_sc0004704.1_g000005 Rmu_sc0004704.1_g000010 Rmu_sc0012301.1_g000004 Rmu_sc0012301.1_g000009
rosa_roxburghii	Rroxscaffold_1G00038060
rosa_rugosa	Rorug05G0202900 Rorug05G0203000 Rorug05G0203100
rosa_samantha	Rh5AG287900 Rh5AG288300 Rh5BG292300 Rh5CG324700 Rh5DG302100
rosa_wichuraiana	Rw5G026730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	386
AciI	CCGC	1 cut(s)	334
AfaI	GTAC	1 cut(s)	112
AfiI	CCNNNNNNNGG	2 cut(s)	134, 386
AluBI	AGCT	1 cut(s)	121
AluI	AGCT	1 cut(s)	121
Alw21I	GWGCWC	1 cut(s)	123
AspLEI	GCGC	2 cut(s)	167, 342
BanII	GRGCYC	1 cut(s)	123
BauI	CACGAG	1 cut(s)	282
Bbv12I	GWGCWC	1 cut(s)	123
BccI	CCATC	3 cut(s)	73, 223, 320
BciVI	GTATCC	1 cut(s)	323
BfaI	CTAG	2 cut(s)	90, 391
BfuI	GTATCC	1 cut(s)	323
BglII	AGATCT	1 cut(s)	23
BmcAI	AGTACT	1 cut(s)	112
Bpu10I	CCTNAGC	1 cut(s)	117
BsaJI	CCNNGG	1 cut(s)	380
Bsc4I	CCNNNNNNNGG	2 cut(s)	134, 386
Bse3DI	GCAATG	1 cut(s)	145
BseDI	CCNNGG	1 cut(s)	380
BseGI	GGATG	4 cut(s)	65, 208, 234, 238
BseLI	CCNNNNNNNGG	2 cut(s)	134, 386
BseMI	GCAATG	1 cut(s)	145
BseMII	CTCAG	2 cut(s)	108, 316
BseRI	GAGGAG	1 cut(s)	238
BsiHKAI	GWGCWC	1 cut(s)	123
BsiSI	CCGG	1 cut(s)	69
BslI	CCNNNNNNNGG	2 cut(s)	134, 386
Bsp1286I	GDGCHC	1 cut(s)	123
Bsp143I	GATC	1 cut(s)	23
BspACI	CCGC	1 cut(s)	334
BspCNI	CTCAG	2 cut(s)	109, 315
BsrDI	GCAATG	1 cut(s)	145
BssECI	CCNNGG	1 cut(s)	380
BssMI	GATC	1 cut(s)	23
BssSI	CACGAG	1 cut(s)	282
BssT1I	CCWWGG	1 cut(s)	380
Bst2BI	CACGAG	1 cut(s)	282
Bst4CI	ACNGT	1 cut(s)	171
BstC8I	GCNNGC	2 cut(s)	9, 338
BstDEI	CTNAG	2 cut(s)	117, 302
BstENI	CCTNNNNNAGG	1 cut(s)	132
BstF5I	GGATG	4 cut(s)	65, 208, 234, 238
BstHHI	GCGC	2 cut(s)	167, 342
BstKTI	GATC	1 cut(s)	26
BstMBI	GATC	1 cut(s)	23
BstX2I	RGATCY	1 cut(s)	23
BstYI	RGATCY	1 cut(s)	23
BsuI	GTATCC	1 cut(s)	323
BtsCI	GGATG	4 cut(s)	65, 208, 234, 238
BtsIMutI	CAGTG	2 cut(s)	167, 310
Cac8I	GCNNGC	2 cut(s)	9, 338
CfoI	GCGC	2 cut(s)	167, 342
Csp6I	GTAC	1 cut(s)	111
CviJI	RGCY	6 cut(s)	35, 47, 103, 121, 268, 390
CviKI_1	RGCY	6 cut(s)	35, 47, 103, 121, 268, 390
CviQI	GTAC	1 cut(s)	111
DdeI	CTNAG	2 cut(s)	117, 302
DpnI	GATC	1 cut(s)	25
DpnII	GATC	1 cut(s)	23
Ecl136II	GAGCTC	1 cut(s)	121
Eco130I	CCWWGG	1 cut(s)	380
Eco24I	GRGCYC	1 cut(s)	123
Eco32I	GATATC	1 cut(s)	250
Eco53kI	GAGCTC	1 cut(s)	121
EcoICRI	GAGCTC	1 cut(s)	121
EcoNI	CCTNNNNNAGG	1 cut(s)	132
EcoRV	GATATC	1 cut(s)	250
EcoT14I	CCWWGG	1 cut(s)	380
EcoT38I	GRGCYC	1 cut(s)	123
ErhI	CCWWGG	1 cut(s)	380
FaiI	YATR	4 cut(s)	78, 317, 348, 387
FokI	GGATG	4 cut(s)	52, 215, 241, 245
FriOI	GRGCYC	1 cut(s)	123
FspBI	CTAG	2 cut(s)	90, 391
GlaI	GCGC	2 cut(s)	166, 341
HapII	CCGG	1 cut(s)	69
HhaI	GCGC	2 cut(s)	167, 342
Hin6I	GCGC	2 cut(s)	165, 340
HinP1I	GCGC	2 cut(s)	165, 340
HinfI	GANTC	1 cut(s)	298
HpaII	CCGG	1 cut(s)	69
Hpy188I	TCNGA	4 cut(s)	28, 275, 297, 354
Hpy188III	TCNNGA	3 cut(s)	14, 53, 116
HpyAV	CCTTC	1 cut(s)	149
HpyCH4III	ACNGT	1 cut(s)	171
HpyF3I	CTNAG	2 cut(s)	117, 302
HspAI	GCGC	2 cut(s)	165, 340
Kzo9I	GATC	1 cut(s)	23
LpnPI	CCDG	9 cut(s)	21, 33, 82, 120, 129, 141, 147, 198, 322
MaeI	CTAG	2 cut(s)	90, 391
MaeIII	GTNAC	2 cut(s)	92, 130
MalI	GATC	1 cut(s)	25
MboI	GATC	1 cut(s)	23
MboII	GAAGA	1 cut(s)	29
MfeI	CAATTG	1 cut(s)	258
MflI	RGATCY	1 cut(s)	23
MhlI	GDGCHC	1 cut(s)	123
MluCI	AATT	2 cut(s)	209, 258
MlyI	GAGTC	1 cut(s)	292
MnlI	CCTC	5 cut(s)	184, 193, 216, 219, 301
MseI	TTAA	1 cut(s)	264
MspA1I	CMGCKG	1 cut(s)	336
MspI	CCGG	1 cut(s)	69
MunI	CAATTG	1 cut(s)	258
NdeII	GATC	1 cut(s)	23
NmuCI	GTSAC	1 cut(s)	130
PflMI	CCANNNNNTGG	1 cut(s)	386
PleI	GAGTC	1 cut(s)	292
PpsI	GAGTC	1 cut(s)	292
Psp124BI	GAGCTC	1 cut(s)	123
PsuI	RGATCY	1 cut(s)	23
RsaI	GTAC	1 cut(s)	112
RsaNI	GTAC	1 cut(s)	111
SacI	GAGCTC	1 cut(s)	123
SaqAI	TTAA	1 cut(s)	264
Sau3AI	GATC	1 cut(s)	23
ScaI	AGTACT	1 cut(s)	112
SchI	GAGTC	1 cut(s)	292
SduI	GDGCHC	1 cut(s)	123
SetI	ASST	5 cut(s)	123, 182, 195, 312, 386
SmlI	CTYRAG	1 cut(s)	12
SmoI	CTYRAG	1 cut(s)	12
Sse9I	AATT	2 cut(s)	209, 258
SsiI	CCGC	1 cut(s)	334
SspMI	CTAG	2 cut(s)	90, 391
SstI	GAGCTC	1 cut(s)	123
StyI	CCWWGG	1 cut(s)	380
TaaI	ACNGT	1 cut(s)	171
TasI	AATT	2 cut(s)	209, 258
TatI	WGTACW	1 cut(s)	110
Tru1I	TTAA	1 cut(s)	264
Tru9I	TTAA	1 cut(s)	264
TscAI	CASTG	2 cut(s)	174, 310
TseFI	GTSAC	1 cut(s)	130
Tsp45I	GTSAC	1 cut(s)	130
TspDTI	ATGAA	1 cut(s)	27
TspRI	CASTG	2 cut(s)	174, 310
Van91I	CCANNNNNTGG	1 cut(s)	386
XagI	CCTNNNNNAGG	1 cut(s)	132
XspI	CTAG	2 cut(s)	90, 391
ZrmI	AGTACT	1 cut(s)	112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.