Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012301.1

Orthogroup ID

OG0004158

Physical Location & Seq

Genomic Coordinates Reverse (-)

21183 .. 22541

Gene Structure 1359 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012301.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

atggatgttggtggaattgatgttacaccagttgttaagcctatccgggaaccacaagttgttgttcatactccgagtgaggttgatatattggatgatggatactgctggcgcaaatatggtcagaaagttgtgaggggaaatcctaatccaaggagctattacaagtgcacaaatgctggatgccctgttagaaagcatgtggagagggcatcccatgatccaaaatcagttataactacatatgagggaaaacataatcatgatgtaatgatgtcccacagtggcggaaccaggatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0006950 GO:0008150 GO:0009611 GO:0009889 GO:0009891 GO:0009893 GO:0009961 GO:0010033 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0043200 GO:0043565 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

100

Amino Acids

11.2

Weight (kDa)

8.84

Isoelectric Point (pI)

29.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004158)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26640 AT4G26640 AT4G26640 AT4G26640 AT4G26640 AT4G26640 AT4G26640
fragaria_vesca	FvH4_3g24010 FvH4_3g24010
malus_domestica	MD03G1188900.v1.1 MD11G1205000.v1.1
prunus_persica	Prupe.4G232600_v2.0.a1 Prupe.4G232600_v2.0.a1 Prupe.4G232600_v2.0.a1
pyrus_communis	pycom03g14170 pycom11g17770
rosa_chinensis	RchiOBHm_Chr5g0042581 RchiOBHm_Chr5g0042601
rosa_laevigata	RLG00000034142
rosa_multiflora	Rmu_sc0004704.1_g000005 Rmu_sc0004704.1_g000010 Rmu_sc0012301.1_g000004 Rmu_sc0012301.1_g000009
rosa_roxburghii	Rroxscaffold_1G00038060
rosa_rugosa	Rorug05G0202900 Rorug05G0203000 Rorug05G0203100
rosa_samantha	Rh5AG287900 Rh5AG288300 Rh5BG292300 Rh5CG324700 Rh5DG302100
rosa_wichuraiana	Rw5G026730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	236
AciI	CCGC	1 cut(s)	288
AclWI	GGATC	1 cut(s)	215
AjnI	CCWGG	1 cut(s)	293
AluBI	AGCT	1 cut(s)	159
AluI	AGCT	1 cut(s)	159
Alw21I	GWGCWC	1 cut(s)	173
Alw44I	GTGCAC	1 cut(s)	169
AlwI	GGATC	1 cut(s)	215
ApaLI	GTGCAC	1 cut(s)	169
AspLEI	GCGC	1 cut(s)	114
AsuC2I	CCSGG	1 cut(s)	47
BaeGI	GKGCMC	1 cut(s)	173
Bbv12I	GWGCWC	1 cut(s)	173
BccI	CCATC	1 cut(s)	92
BciT130I	CCWGG	1 cut(s)	295
BciVI	GTATCC	1 cut(s)	95
BcnI	CCSGG	1 cut(s)	47
BfuI	GTATCC	1 cut(s)	95
Bme1390I	CCNGG	2 cut(s)	47, 295
BmiI	GGNNCC	2 cut(s)	51, 292
BmrFI	CCNGG	2 cut(s)	47, 295
BmsI	GCATC	2 cut(s)	173, 221
BpuMI	CCSGG	1 cut(s)	47
BsaJI	CCNNGG	1 cut(s)	152
Bse1I	ACTGG	1 cut(s)	29
BseBI	CCWGG	1 cut(s)	295
BseDI	CCNNGG	1 cut(s)	152
BseGI	GGATG	4 cut(s)	10, 100, 188, 212
BseNI	ACTGG	1 cut(s)	29
BseSI	GKGCMC	1 cut(s)	173
BsiHKAI	GWGCWC	1 cut(s)	173
BsiSI	CCGG	1 cut(s)	46
BslFI	GGGAC	1 cut(s)	262
BsmFI	GGGAC	1 cut(s)	262
Bsp1286I	GDGCHC	1 cut(s)	173
Bsp143I	GATC	1 cut(s)	220
BspACI	CCGC	1 cut(s)	288
BspHI	TCATGA	1 cut(s)	262
BspLI	GGNNCC	2 cut(s)	51, 292
BspPI	GGATC	1 cut(s)	215
BsrI	ACTGG	1 cut(s)	29
BssECI	CCNNGG	1 cut(s)	152
BssMI	GATC	1 cut(s)	220
BssT1I	CCWWGG	1 cut(s)	152
Bst2UI	CCWGG	1 cut(s)	295
Bst4CI	ACNGT	1 cut(s)	284
BstC8I	GCNNGC	1 cut(s)	110
BstF5I	GGATG	4 cut(s)	10, 100, 188, 212
BstHHI	GCGC	1 cut(s)	114
BstKTI	GATC	1 cut(s)	223
BstMBI	GATC	1 cut(s)	220
BstNI	CCWGG	1 cut(s)	295
BstNSI	RCATGY	1 cut(s)	203
BstSCI	CCNGG	2 cut(s)	45, 293
BstSLI	GKGCMC	1 cut(s)	173
BsuI	GTATCC	1 cut(s)	95
BtsCI	GGATG	4 cut(s)	10, 100, 188, 212
BtsIMutI	CAGTG	1 cut(s)	289
Cac8I	GCNNGC	1 cut(s)	110
CciI	TCATGA	1 cut(s)	262
CfoI	GCGC	1 cut(s)	114
CviAII	CATG	3 cut(s)	200, 218, 263
CviJI	RGCY	2 cut(s)	40, 159
CviKI_1	RGCY	2 cut(s)	40, 159
DpnI	GATC	1 cut(s)	222
DpnII	GATC	1 cut(s)	220
EciI	GGCGGA	1 cut(s)	303
Eco130I	CCWWGG	1 cut(s)	152
EcoRII	CCWGG	1 cut(s)	293
EcoT14I	CCWWGG	1 cut(s)	152
ErhI	CCWWGG	1 cut(s)	152
FaeI	CATG	3 cut(s)	203, 221, 266
FaqI	GGGAC	1 cut(s)	262
FatI	CATG	3 cut(s)	199, 217, 262
FauNDI	CATATG	1 cut(s)	244
FokI	GGATG	4 cut(s)	17, 107, 195, 199
GlaI	GCGC	1 cut(s)	113
HapII	CCGG	1 cut(s)	46
HhaI	GCGC	1 cut(s)	114
Hin1II	CATG	3 cut(s)	203, 221, 266
Hin6I	GCGC	1 cut(s)	112
HinP1I	GCGC	1 cut(s)	112
HpaII	CCGG	1 cut(s)	46
Hpy166II	GTNNAC	1 cut(s)	171
Hpy188I	TCNGA	2 cut(s)	75, 126
Hpy188III	TCNNGA	1 cut(s)	263
Hpy8I	GTNNAC	1 cut(s)	171
HpyCH4III	ACNGT	1 cut(s)	284
HpyCH4V	TGCA	1 cut(s)	171
Hsp92II	CATG	3 cut(s)	203, 221, 266
HspAI	GCGC	1 cut(s)	112
Kzo9I	GATC	1 cut(s)	220
LmnI	GCTCC	1 cut(s)	156
LpnPI	CCDG	6 cut(s)	42, 59, 94, 165, 201, 280
LweI	GCATC	2 cut(s)	173, 221
MaeIII	GTNAC	1 cut(s)	22
MalI	GATC	1 cut(s)	222
MboI	GATC	1 cut(s)	220
MhlI	GDGCHC	1 cut(s)	173
MluCI	AATT	1 cut(s)	15
MnlI	CCTC	4 cut(s)	73, 129, 201, 241
MseI	TTAA	1 cut(s)	36
MslI	CAYNNNNRTG	1 cut(s)	261
MspI	CCGG	1 cut(s)	46
MspR9I	CCNGG	2 cut(s)	47, 295
MvaI	CCWGG	1 cut(s)	295
NciI	CCSGG	1 cut(s)	47
NdeI	CATATG	1 cut(s)	244
NdeII	GATC	1 cut(s)	220
NlaIII	CATG	3 cut(s)	203, 221, 266
NlaIV	GGNNCC	2 cut(s)	51, 292
NspI	RCATGY	1 cut(s)	203
PagI	TCATGA	1 cut(s)	262
PfoI	TCCNGGA	1 cut(s)	45
PsiI	TTATAA	1 cut(s)	236
Psp6I	CCWGG	1 cut(s)	293
PspGI	CCWGG	1 cut(s)	293
PspN4I	GGNNCC	2 cut(s)	51, 292
RseI	CAYNNNNRTG	1 cut(s)	261
SaqAI	TTAA	1 cut(s)	36
Sau3AI	GATC	1 cut(s)	220
ScrFI	CCNGG	2 cut(s)	47, 295
SduI	GDGCHC	1 cut(s)	173
SetI	ASST	2 cut(s)	84, 161
SfaNI	GCATC	2 cut(s)	173, 221
SmiMI	CAYNNNNRTG	1 cut(s)	261
Sse9I	AATT	1 cut(s)	15
SsiI	CCGC	1 cut(s)	288
StyD4I	CCNGG	2 cut(s)	45, 293
StyI	CCWWGG	1 cut(s)	152
TaaI	ACNGT	1 cut(s)	284
TasI	AATT	1 cut(s)	15
Tru1I	TTAA	1 cut(s)	36
Tru9I	TTAA	1 cut(s)	36
TscAI	CASTG	1 cut(s)	289
TspDTI	ATGAA	1 cut(s)	56
TspRI	CASTG	1 cut(s)	289
VneI	GTGCAC	1 cut(s)	169
XceI	RCATGY	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.