Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004158

Physical Location & Seq

Genomic Coordinates Forward (+)

37464450 .. 37465825

Gene Structure 1376 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ32099

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGATGTTGGTGGAATTGATGTTACACCAGTTGTTAAGCCTATCCGGGAACCACAAGTTGTTGTTCAAACTCTGAGTGCGGTTGATATATTGGATGATGGATACCGCTGGCACAAATATGGACCAAGCTCCACATCTTCTTCTCCGTCTCCGGCACCAAGGATCTCCAGATTGCGAACCTCACTCTTAGGGTTCTCTATCACCCCGAGGAGCTATTACGAGTGCACAAATGCCGGATGCCCTGTTAGAAAGCATGTGGAGAGGGCATCCCATGATCCAAAATCAGTTATAACTACATATGAGGGAAAACATAATCATGATGTAATGATGTCCCAAGTGCAAGGACTAGTAGCCATGACACTTTGGGACCAACAACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0006950 GO:0008150 GO:0009611 GO:0009889 GO:0009891 GO:0009893 GO:0009961 GO:0010033 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0043200 GO:0043565 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

126

Amino Acids

13.96

Weight (kDa)

7.84

Isoelectric Point (pI)

58.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	68 - 107	9.4e-15	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004158)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26640 AT4G26640 AT4G26640 AT4G26640 AT4G26640 AT4G26640 AT4G26640
fragaria_vesca	FvH4_3g24010 FvH4_3g24010
malus_domestica	MD03G1188900.v1.1 MD11G1205000.v1.1
prunus_persica	Prupe.4G232600_v2.0.a1 Prupe.4G232600_v2.0.a1 Prupe.4G232600_v2.0.a1
pyrus_communis	pycom03g14170 pycom11g17770
rosa_chinensis	RchiOBHm_Chr5g0042581 RchiOBHm_Chr5g0042601
rosa_laevigata	RLG00000034142
rosa_multiflora	Rmu_sc0004704.1_g000005 Rmu_sc0004704.1_g000010 Rmu_sc0012301.1_g000004 Rmu_sc0012301.1_g000009
rosa_roxburghii	Rroxscaffold_1G00038060
rosa_rugosa	Rorug05G0202900 Rorug05G0203000 Rorug05G0203100
rosa_samantha	Rh5AG287900 Rh5AG288300 Rh5BG292300 Rh5CG324700 Rh5DG302100
rosa_wichuraiana	Rw5G026730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	290
AccB1I	GGYRCC	1 cut(s)	154
AciI	CCGC	2 cut(s)	80, 106
AclWI	GGATC	2 cut(s)	170, 269
AgsI	TTSAA	1 cut(s)	68
AhlI	ACTAGT	1 cut(s)	346
AluBI	AGCT	2 cut(s)	129, 213
AluI	AGCT	2 cut(s)	129, 213
Alw21I	GWGCWC	1 cut(s)	227
Alw26I	GTCTC	1 cut(s)	153
Alw44I	GTGCAC	1 cut(s)	223
AlwI	GGATC	2 cut(s)	170, 269
Ama87I	CYCGRG	1 cut(s)	205
ApaLI	GTGCAC	1 cut(s)	223
AspS9I	GGNCC	2 cut(s)	122, 367
AsuC2I	CCSGG	1 cut(s)	47
AsuHPI	GGTGA	1 cut(s)	193
AvaI	CYCGRG	1 cut(s)	205
AvaII	GGWCC	2 cut(s)	122, 367
BaeGI	GKGCMC	1 cut(s)	227
BanI	GGYRCC	1 cut(s)	154
Bbv12I	GWGCWC	1 cut(s)	227
BccI	CCATC	1 cut(s)	92
BciVI	GTATCC	1 cut(s)	95
BcnI	CCSGG	1 cut(s)	47
BcoDI	GTCTC	1 cut(s)	153
BcuI	ACTAGT	1 cut(s)	346
BfaI	CTAG	1 cut(s)	347
BfuI	GTATCC	1 cut(s)	95
Bme1390I	CCNGG	1 cut(s)	47
Bme18I	GGWCC	2 cut(s)	122, 367
BmeT110I	CYCGRG	1 cut(s)	205
BmgT120I	GGNCC	2 cut(s)	122, 367
BmiI	GGNNCC	3 cut(s)	51, 156, 368
BmrFI	CCNGG	1 cut(s)	47
BmsI	GCATC	2 cut(s)	227, 275
BpmI	CTGGAG	1 cut(s)	151
BpuMI	CCSGG	1 cut(s)	47
BsaJI	CCNNGG	2 cut(s)	158, 206
Bse1I	ACTGG	1 cut(s)	29
BseDI	CCNNGG	2 cut(s)	158, 206
BseGI	GGATG	4 cut(s)	10, 100, 242, 266
BseMII	CTCAG	1 cut(s)	65
BseNI	ACTGG	1 cut(s)	29
BseRI	GAGGAG	1 cut(s)	223
BseSI	GKGCMC	1 cut(s)	227
BshNI	GGYRCC	1 cut(s)	154
BsiHKAI	GWGCWC	1 cut(s)	227
BsiHKCI	CYCGRG	1 cut(s)	205
BsiSI	CCGG	3 cut(s)	46, 152, 234
BslFI	GGGAC	1 cut(s)	316
BsmAI	GTCTC	1 cut(s)	153
BsmBI	CGTCTC	1 cut(s)	153
BsmFI	GGGAC	1 cut(s)	316
BsoBI	CYCGRG	1 cut(s)	205
Bsp1286I	GDGCHC	1 cut(s)	227
Bsp143I	GATC	2 cut(s)	162, 274
BspACI	CCGC	2 cut(s)	80, 106
BspCNI	CTCAG	1 cut(s)	66
BspHI	TCATGA	1 cut(s)	316
BspLI	GGNNCC	3 cut(s)	51, 156, 368
BspPI	GGATC	2 cut(s)	170, 269
BspT107I	GGYRCC	1 cut(s)	154
BsrI	ACTGG	1 cut(s)	29
BssECI	CCNNGG	2 cut(s)	158, 206
BssMI	GATC	2 cut(s)	162, 274
BssT1I	CCWWGG	1 cut(s)	158
BstC8I	GCNNGC	1 cut(s)	110
BstDEI	CTNAG	2 cut(s)	74, 187
BstF5I	GGATG	4 cut(s)	10, 100, 242, 266
BstKTI	GATC	2 cut(s)	165, 277
BstMAI	GTCTC	1 cut(s)	153
BstMBI	GATC	2 cut(s)	162, 274
BstNSI	RCATGY	1 cut(s)	257
BstSCI	CCNGG	1 cut(s)	45
BstSLI	GKGCMC	1 cut(s)	227
BstX2I	RGATCY	1 cut(s)	162
BstYI	RGATCY	1 cut(s)	162
BsuI	GTATCC	1 cut(s)	95
BtsCI	GGATG	4 cut(s)	10, 100, 242, 266
Cac8I	GCNNGC	1 cut(s)	110
CciI	TCATGA	1 cut(s)	316
Cfr13I	GGNCC	2 cut(s)	122, 367
CviAII	CATG	4 cut(s)	254, 272, 317, 355
CviJI	RGCY	4 cut(s)	40, 129, 213, 353
CviKI_1	RGCY	4 cut(s)	40, 129, 213, 353
DdeI	CTNAG	2 cut(s)	74, 187
DpnI	GATC	2 cut(s)	164, 276
DpnII	GATC	2 cut(s)	162, 274
Eco130I	CCWWGG	1 cut(s)	158
Eco47I	GGWCC	2 cut(s)	122, 367
Eco88I	CYCGRG	1 cut(s)	205
EcoT14I	CCWWGG	1 cut(s)	158
ErhI	CCWWGG	1 cut(s)	158
Esp3I	CGTCTC	1 cut(s)	153
FaeI	CATG	4 cut(s)	257, 275, 320, 358
FaqI	GGGAC	1 cut(s)	316
FatI	CATG	4 cut(s)	253, 271, 316, 354
FauNDI	CATATG	1 cut(s)	298
FokI	GGATG	4 cut(s)	17, 107, 249, 253
FspBI	CTAG	1 cut(s)	347
GsuI	CTGGAG	1 cut(s)	151
HapII	CCGG	3 cut(s)	46, 152, 234
Hin1II	CATG	4 cut(s)	257, 275, 320, 358
HpaII	CCGG	3 cut(s)	46, 152, 234
HphI	GGTGA	1 cut(s)	193
Hpy166II	GTNNAC	1 cut(s)	225
Hpy188I	TCNGA	1 cut(s)	75
Hpy188III	TCNNGA	2 cut(s)	168, 317
Hpy8I	GTNNAC	1 cut(s)	225
HpyCH4V	TGCA	2 cut(s)	225, 340
HpyF3I	CTNAG	2 cut(s)	74, 187
Hsp92II	CATG	4 cut(s)	257, 275, 320, 358
Kzo9I	GATC	2 cut(s)	162, 274
LmnI	GCTCC	2 cut(s)	134, 210
LpnPI	CCDG	7 cut(s)	42, 59, 94, 165, 181, 247, 255
LweI	GCATC	2 cut(s)	227, 275
MaeI	CTAG	1 cut(s)	347
MaeIII	GTNAC	1 cut(s)	22
MalI	GATC	2 cut(s)	164, 276
MboI	GATC	2 cut(s)	162, 274
MboII	GAAGA	2 cut(s)	129, 132
MflI	RGATCY	1 cut(s)	162
MhlI	GDGCHC	1 cut(s)	227
MluCI	AATT	1 cut(s)	15
MnlI	CCTC	4 cut(s)	190, 201, 255, 295
MseI	TTAA	1 cut(s)	36
MslI	CAYNNNNRTG	2 cut(s)	117, 315
MspA1I	CMGCKG	1 cut(s)	108
MspI	CCGG	3 cut(s)	46, 152, 234
MspR9I	CCNGG	1 cut(s)	47
NciI	CCSGG	1 cut(s)	47
NdeI	CATATG	1 cut(s)	298
NdeII	GATC	2 cut(s)	162, 274
NlaIII	CATG	4 cut(s)	257, 275, 320, 358
NlaIV	GGNNCC	3 cut(s)	51, 156, 368
NspI	RCATGY	1 cut(s)	257
PagI	TCATGA	1 cut(s)	316
PfoI	TCCNGGA	1 cut(s)	45
PsiI	TTATAA	1 cut(s)	290
PspN4I	GGNNCC	3 cut(s)	51, 156, 368
PspPI	GGNCC	2 cut(s)	122, 367
PsuI	RGATCY	1 cut(s)	162
RseI	CAYNNNNRTG	2 cut(s)	117, 315
SaqAI	TTAA	1 cut(s)	36
Sau3AI	GATC	2 cut(s)	162, 274
Sau96I	GGNCC	2 cut(s)	122, 367
ScrFI	CCNGG	1 cut(s)	47
SduI	GDGCHC	1 cut(s)	227
SetI	ASST	4 cut(s)	131, 182, 215, 379
SfaNI	GCATC	2 cut(s)	227, 275
SinI	GGWCC	2 cut(s)	122, 367
SmiMI	CAYNNNNRTG	2 cut(s)	117, 315
SpeI	ACTAGT	1 cut(s)	346
Sse9I	AATT	1 cut(s)	15
SsiI	CCGC	2 cut(s)	80, 106
SspMI	CTAG	1 cut(s)	347
StyD4I	CCNGG	1 cut(s)	45
StyI	CCWWGG	1 cut(s)	158
TasI	AATT	1 cut(s)	15
Tru1I	TTAA	1 cut(s)	36
Tru9I	TTAA	1 cut(s)	36
TspGWI	ACGGA	1 cut(s)	135
VneI	GTGCAC	1 cut(s)	223
VpaK11BI	GGWCC	2 cut(s)	122, 367
XceI	RCATGY	1 cut(s)	257
XspI	CTAG	1 cut(s)	347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.