Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0004158

Physical Location & Seq

Genomic Coordinates Forward (+)

20161435 .. 20162943

Gene Structure 1509 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0202900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGAGGATTCAAAGTCAAAGCATCAAGCAGGAGCCGAAGTTAAAGATAGGATCAGTGCATTACCGGATGCAGTTTTGTGCCACATACTTTCTTCCCTTCAAACAAAAAATGCTGTTGGTCATCTGCCTGCTTTTAATAATCTGACCAAATTGAAATTGGTTCTTCTTGAATGCTTTCCCTGGGAATTGCTAACGCGGATACTCGGGAGATCACCTCATCTGGAGCTTCTTGTCTTAGAGCATAGTCTCACTAGTTGTGATGATGATGACTCGGAGTATGACTCAGAACATAAAGAACCCCCCAAGCCTCGATGGCATCCCCCACAGGTTGTGCCTATTTGTTTAGTGTCAAACCTCAAGACTGTCTCCATCAAGGGATTCAAGGGACAGGTGCATGCAATGGAAGTGGCAAAATATTTCCTGAGGAATGGTGCAGTTTTGAAGAAAATAACAATTTCCAAAGCTCCTCTGTGTGAAGAAAATCAGGCCCCCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0006950 GO:0008150 GO:0009611 GO:0009889 GO:0009891 GO:0009893 GO:0009961 GO:0010033 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0043200 GO:0043565 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

165

Amino Acids

18.41

Weight (kDa)

7.08

Isoelectric Point (pI)

51.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBD	PF08387	108 - 152	9.3e-16	FBD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0004158)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26640 AT4G26640 AT4G26640 AT4G26640 AT4G26640 AT4G26640 AT4G26640
fragaria_vesca	FvH4_3g24010 FvH4_3g24010
malus_domestica	MD03G1188900.v1.1 MD11G1205000.v1.1
prunus_persica	Prupe.4G232600_v2.0.a1 Prupe.4G232600_v2.0.a1 Prupe.4G232600_v2.0.a1
pyrus_communis	pycom03g14170 pycom11g17770
rosa_chinensis	RchiOBHm_Chr5g0042581 RchiOBHm_Chr5g0042601
rosa_laevigata	RLG00000034142
rosa_multiflora	Rmu_sc0004704.1_g000005 Rmu_sc0004704.1_g000010 Rmu_sc0012301.1_g000004 Rmu_sc0012301.1_g000009
rosa_roxburghii	Rroxscaffold_1G00038060
rosa_rugosa	Rorug05G0202900 Rorug05G0203000 Rorug05G0203100
rosa_samantha	Rh5AG287900 Rh5AG288300 Rh5BG292300 Rh5CG324700 Rh5DG302100
rosa_wichuraiana	Rw5G026730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	196
AciI	CCGC	1 cut(s)	196
AclWI	GGATC	1 cut(s)	59
AgsI	TTSAA	6 cut(s)	12, 101, 154, 170, 382, 442
AhlI	ACTAGT	1 cut(s)	251
AjnI	CCWGG	1 cut(s)	179
AluBI	AGCT	2 cut(s)	226, 464
AluI	AGCT	2 cut(s)	226, 464
Alw26I	GTCTC	2 cut(s)	251, 370
AlwI	GGATC	1 cut(s)	59
Ama87I	CYCGRG	1 cut(s)	203
AoxI	GGCC	1 cut(s)	486
Asp700I	GAANNNNTTC	1 cut(s)	174
AspS9I	GGNCC	1 cut(s)	487
AsuHPI	GGTGA	1 cut(s)	204
AvaI	CYCGRG	1 cut(s)	203
AxyI	CCTNAGG	1 cut(s)	422
BccI	CCATC	2 cut(s)	306, 377
BciT130I	CCWGG	1 cut(s)	181
BciVI	GTATCC	1 cut(s)	192
BcoDI	GTCTC	2 cut(s)	251, 370
BcuI	ACTAGT	1 cut(s)	251
BfaI	CTAG	1 cut(s)	252
BfuI	GTATCC	1 cut(s)	192
BglI	GCCNNNNNGGC	1 cut(s)	313
Bme1390I	CCNGG	1 cut(s)	181
BmeT110I	CYCGRG	1 cut(s)	203
BmgT120I	GGNCC	1 cut(s)	487
BmiI	GGNNCC	2 cut(s)	34, 489
BmrFI	CCNGG	1 cut(s)	181
BmsI	GCATC	3 cut(s)	31, 58, 325
BplI	GAGNNNNNCTC	4 cut(s)	199, 231, 266, 298
BpmI	CTGGAG	1 cut(s)	242
BpuEI	CTTGAG	1 cut(s)	341
BsaJI	CCNNGG	2 cut(s)	179, 180
BsaWI	WCCGGW	1 cut(s)	64
BsaXI	ACNNNNNCTCC	2 cut(s)	24, 54
Bse21I	CCTNAGG	1 cut(s)	422
Bse3DI	GCAATG	1 cut(s)	405
BseBI	CCWGG	1 cut(s)	181
BseDI	CCNNGG	2 cut(s)	179, 180
BseGI	GGATG	2 cut(s)	73, 316
BseMI	GCAATG	1 cut(s)	405
BseMII	CTCAG	2 cut(s)	297, 413
BseRI	GAGGAG	1 cut(s)	456
BsgI	GTGCAG	1 cut(s)	453
Bsh1236I	CGCG	1 cut(s)	196
BshFI	GGCC	1 cut(s)	488
BsiHKCI	CYCGRG	1 cut(s)	203
BsiSI	CCGG	1 cut(s)	65
BslFI	GGGAC	1 cut(s)	399
BsmAI	GTCTC	2 cut(s)	251, 370
BsmFI	GGGAC	1 cut(s)	399
BsmI	GAATGC	1 cut(s)	176
BsnI	GGCC	1 cut(s)	488
BsoBI	CYCGRG	1 cut(s)	203
Bsp143I	GATC	2 cut(s)	51, 209
BspACI	CCGC	1 cut(s)	196
BspANI	GGCC	1 cut(s)	488
BspCNI	CTCAG	2 cut(s)	296, 414
BspFNI	CGCG	1 cut(s)	196
BspLI	GGNNCC	2 cut(s)	34, 489
BspPI	GGATC	1 cut(s)	59
BsrDI	GCAATG	1 cut(s)	405
BssECI	CCNNGG	2 cut(s)	179, 180
BssMI	GATC	2 cut(s)	51, 209
Bst2UI	CCWGG	1 cut(s)	181
Bst4CI	ACNGT	1 cut(s)	364
BstC8I	GCNNGC	2 cut(s)	129, 396
BstDEI	CTNAG	3 cut(s)	235, 283, 422
BstF5I	GGATG	2 cut(s)	73, 316
BstFNI	CGCG	1 cut(s)	196
BstKTI	GATC	2 cut(s)	54, 212
BstMAI	GTCTC	2 cut(s)	251, 370
BstMBI	GATC	2 cut(s)	51, 209
BstMWI	GCNNNNNNNGC	1 cut(s)	313
BstNI	CCWGG	1 cut(s)	181
BstNSI	RCATGY	1 cut(s)	398
BstSCI	CCNGG	1 cut(s)	179
BstUI	CGCG	1 cut(s)	196
Bsu36I	CCTNAGG	1 cut(s)	422
BsuI	GTATCC	1 cut(s)	192
BsuRI	GGCC	1 cut(s)	488
BtsCI	GGATG	2 cut(s)	73, 316
BtsIMutI	CAGTG	1 cut(s)	61
Cac8I	GCNNGC	2 cut(s)	129, 396
Cfr13I	GGNCC	1 cut(s)	487
CspCI	CAANNNNNGTGG	2 cut(s)	387, 422
CviAII	CATG	1 cut(s)	395
CviJI	RGCY	5 cut(s)	35, 226, 307, 464, 488
CviKI_1	RGCY	5 cut(s)	35, 226, 307, 464, 488
DdeI	CTNAG	3 cut(s)	235, 283, 422
DpnI	GATC	2 cut(s)	53, 211
DpnII	GATC	2 cut(s)	51, 209
Eco81I	CCTNAGG	1 cut(s)	422
Eco88I	CYCGRG	1 cut(s)	203
EcoO109I	RGGNCCY	1 cut(s)	487
EcoRII	CCWGG	1 cut(s)	179
FaeI	CATG	1 cut(s)	398
FaiI	YATR	5 cut(s)	86, 243, 279, 291, 396
FaqI	GGGAC	1 cut(s)	399
FatI	CATG	1 cut(s)	394
FokI	GGATG	2 cut(s)	80, 303
FspBI	CTAG	1 cut(s)	252
GsuI	CTGGAG	1 cut(s)	242
HaeIII	GGCC	1 cut(s)	488
HapII	CCGG	1 cut(s)	65
Hin1II	CATG	1 cut(s)	398
HinfI	GANTC	4 cut(s)	8, 269, 281, 378
HpaII	CCGG	1 cut(s)	65
HphI	GGTGA	1 cut(s)	204
Hpy188I	TCNGA	3 cut(s)	144, 274, 286
Hpy188III	TCNNGA	5 cut(s)	167, 205, 221, 358, 421
HpyAV	CCTTC	1 cut(s)	107
HpyCH4III	ACNGT	1 cut(s)	364
HpyCH4V	TGCA	5 cut(s)	59, 71, 394, 398, 434
HpyF10VI	GCNNNNNNNGC	1 cut(s)	313
HpyF3I	CTNAG	3 cut(s)	235, 283, 422
Hsp92II	CATG	1 cut(s)	398
Kzo9I	GATC	2 cut(s)	51, 209
LmnI	GCTCC	3 cut(s)	32, 223, 469
LweI	GCATC	3 cut(s)	31, 58, 325
MaeI	CTAG	1 cut(s)	252
MalI	GATC	2 cut(s)	53, 211
MboI	GATC	2 cut(s)	51, 209
MboII	GAAGA	4 cut(s)	84, 155, 454, 488
MluCI	AATT	4 cut(s)	149, 155, 185, 453
MlyI	GAGTC	2 cut(s)	263, 275
MnlI	CCTC	5 cut(s)	225, 318, 365, 417, 477
MroXI	GAANNNNTTC	1 cut(s)	174
MseI	TTAA	2 cut(s)	42, 135
MspI	CCGG	1 cut(s)	65
MspR9I	CCNGG	1 cut(s)	181
Mva1269I	GAATGC	1 cut(s)	176
MvaI	CCWGG	1 cut(s)	181
MvnI	CGCG	1 cut(s)	196
MwoI	GCNNNNNNNGC	1 cut(s)	313
NdeII	GATC	2 cut(s)	51, 209
NlaIII	CATG	1 cut(s)	398
NlaIV	GGNNCC	2 cut(s)	34, 489
NspI	RCATGY	1 cut(s)	398
PaeI	GCATGC	1 cut(s)	398
PasI	CCCWGGG	1 cut(s)	180
PctI	GAATGC	1 cut(s)	176
PdmI	GAANNNNTTC	1 cut(s)	174
PfeI	GAWTC	2 cut(s)	8, 378
PleI	GAGTC	2 cut(s)	263, 275
PpsI	GAGTC	2 cut(s)	263, 275
Psp6I	CCWGG	1 cut(s)	179
PspGI	CCWGG	1 cut(s)	179
PspN4I	GGNNCC	2 cut(s)	34, 489
PspPI	GGNCC	1 cut(s)	487
SaqAI	TTAA	2 cut(s)	42, 135
Sau3AI	GATC	2 cut(s)	51, 209
Sau96I	GGNCC	1 cut(s)	487
SchI	GAGTC	2 cut(s)	263, 275
ScrFI	CCNGG	1 cut(s)	181
SetI	ASST	6 cut(s)	217, 228, 330, 357, 393, 466
SfaNI	GCATC	3 cut(s)	31, 58, 325
SmlI	CTYRAG	1 cut(s)	356
SmoI	CTYRAG	1 cut(s)	356
SpeI	ACTAGT	1 cut(s)	251
SphI	GCATGC	1 cut(s)	398
Sse9I	AATT	4 cut(s)	149, 155, 185, 453
SsiI	CCGC	1 cut(s)	196
SspI	AATATT	1 cut(s)	416
SspMI	CTAG	1 cut(s)	252
StyD4I	CCNGG	1 cut(s)	179
TaaI	ACNGT	1 cut(s)	364
TaqI	TCGA	1 cut(s)	310
TasI	AATT	4 cut(s)	149, 155, 185, 453
TfiI	GAWTC	2 cut(s)	8, 378
Tru1I	TTAA	2 cut(s)	42, 135
Tru9I	TTAA	2 cut(s)	42, 135
TscAI	CASTG	1 cut(s)	61
TspRI	CASTG	1 cut(s)	61
XceI	RCATGY	1 cut(s)	398
XcmI	CCANNNNNNNNNTGG	1 cut(s)	154
XmnI	GAANNNNTTC	1 cut(s)	174
XspI	CTAG	1 cut(s)	252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.